arning: Mibbit stopped working for us
a few weeks ago.
--
M. Scott Marshall, PhD
MAASTRO clinic, http://www.maastro.nl/en/1/
http://eurecaproject.eu/
https://plus.google.com/u/0/114642613065018821852/posts
http://www.linkedin.com/pub/m-scott-marshall/5/464/a22
--
Helen Parkinson, PhD
Functional Genomics Team Leader
EBI
2012 10:05, Mark wrote:
Would there be sub-properties of "derived-from": "extracted-from" and
"adapted-from"?
M
On Fri, 27 Apr 2012 10:54:21 +0200, Helen Parkinson
wrote:
Derived-from can be used to model e.g. DNAs derived from a cell line,
a blood derived
minutes.html
Cheers,
Scott
--
Helen Parkinson, PhD
Team Leader
Functional Genomics Group
EBI
EBI 01223 494672
Skype: helen.parkinson.ebi
www.ebi.ac.uk/fgpt/
k, MD, PhD
European Bioinformatics Institute
+44 (0) 1223 492 562
tomasz.adamus...@ebi.ac.uk
--
Helen Parkinson, PhD
Team Leader
Functional Genomics Group
EBI
EBI 01223 494672
Skype: helen.parkinson.ebi
www.ebi.ac.uk/fgpt/
o a
gene? Is it enough to just give the HGNC symbol? Could I instead just
use entrez or ensembl ids?
C
--
Helen Parkinson, PhD
Team Leader
Functional Genomics Group
EBI
EBI 01223 494672
Skype: helen.parkinson.ebi
ould not be our production
release.
Regards,
Christoph
--
Helen Parkinson, PhD
Team Leader
Functional Genomics Group
EBI
EBI 01223 494672
Skype: helen.parkinson.ebi
Hi all,
let me clarify. OBI is at release 1.0
1. EFO imports parts of OBI that we need for ArrayExpress, we will
continue to use EFO in ArrayExpress, as it has added terms and relations
between terms that exist nowhere else - cell types, to cell lines for
example. And it has some terms that a
Susanna is correct, MGED ontology is being phased out. Copying in Jie
Zheng from U Penn who has done much of the work mapping OBI to MGED, and
requesting new terms for OBI
best
Helen
Susanna-Assunta Sansone wrote:
> integration of existing ontologies with some gap filling. > Initial
integrati
which is
something that I'm rather interested in).
On Tue, Oct 13, 2009 at 1:00 AM, Helen Parkinson <mailto:parkin...@ebi.ac.uk>> wrote:
here are my action items from the call today
1. MAGE-TAB->RDF, Lena requested details.
Code here: https://sourceforge.net/pr
Having the NIFSTD in bioportal would be ideal, we will always defer to
NIF for neuroscience terms,
best
Helen
Kei Cheung wrote:
Nigam Shah wrote:
On Tue, Sep 1, 2009 at 6:37 AM, Helen Parkinson <mailto:parkin...@ebi.ac.uk>> wrote:
The performance depends largely on how
NCI is a good match also for microarray data, but the overhead of using
it is high, and more errors are generated when text mining and through
user error. We get better performance from EFO than from NCIT.
best
Helen
Nigam Shah wrote:
On Tue, Sep 1, 2009 at 6:37 AM, Helen Parkinson
-weekly
* Convener: Kei Cheung
== Agenda ==
* Roll call and introduction (Kei)
* HCLS KB update (Matthias, Adrian)
* Update on neuroscience microarray data curation (Helen) *
Presentation: "Semantic Annotation of Genomics Experiments" (Sudeshna)
* Q&A and discussion (All)
--
.net/pub/sourcefo
rge/m/mg/mged/MAGE-2002-01-07.xmi.gz/MAGE-2002-01-07.xmi
v1.1:
http://www.mirrorservice.org/sites/download.sourceforge.net/pub/sourcefo
rge/m/mg/mged/MAGE.xmi.gz[peek]
[3]
http://www.mirrorservice.org/sites/download.sourceforge.net/pub/sourcefo
rge/m/mg/mged/MAGE%20Java%20
This is probably technically possible - but you'd need to process a lot
of complex mage-ml to get out some quite simple information - there's a
node-edge sample processing graph, plus all the external data files in
there - mage-ml is mostly tags and the files are large. We've moved
internally t
quot;)
* IRC Channel: irc.w3.org port 6665 channel #hcls (see
[http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see
[http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
* Duration: ~1 hour
* Frequency: bi-weekly
* Convener: Kei Cheung
== Agenda ==
* Roll call and introduction (Kei)
on: ~1 hour
* Frequency: bi-weekly
* Convener: Kei Cheung
== Agenda ==
* Roll call and introduction (Kei)
* TCM data quick update (Jun, Kei)
* Query federation use case expanison (microarray) (All)
--
Helen Parkinson, PhD
ArrayExpress Production Coordinator,
Microarray Informatics Team,
EBI
EBI 01223 494672
Skype: helen.parkinson.ebi
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