Dear all,
I'm about to teach a course to medical informatics students that have
never used OWL before. Are there any good, up-to-date tutorials or even
course materials on OWL 2, biomedical ontology building and Protege that
you could recommend? I was surprised to find that most publicly
avai
not allow round-tripping
the data and would probably not be accepted as part of the official FHIR
project.
Am I overly sceptical here?
With kind regards,
Matthias Samwald
Am 21.12.2014 00:15, schrieb Lloyd McKenzie:
Well, for FHIR at a minimum, you must be able to round-trip
instances. And what
Dear all,
It seems like this mailing list is now automatically receiving updates
from an issue tracker. Will this remain in place for the forseeable
future? I think in that case some subscribers might want to change how
the e-mails from this list are handled in their clients (or, possibly,
ch
leadmin/HP-Relaunch/pdforganisation/personalabteilung/Bewerbung_Stellenausschreibungen/Personalmitteilungsblatt45-051114.pdf
Please let me know if you have questions.
Best,
Matthias Samwald
--
Assistant Professor
Center for Medical Statistics, Informatics, and Intelligent Systems
Medical University
uses the OWL version (or I'm not
good at googling).
best,
Andrea
On Mon, Aug 4, 2014 at 2:03 PM, Matthias Samwald
<mailto:matthias.samw...@meduniwien.ac.at>> wrote:
Hi Andrea,
I remember you got the recommendation to try ELK on the
Biohackathon mailing list. Is ELK
Hi Andrea,
I remember you got the recommendation to try ELK on the Biohackathon
mailing list. Is ELK not working for you?
You might also want to give TrOWL a try if ELK is not working for you
for some reason. Konclude might also be an option as it seems to
outperform most other reasoners, but
, Mobile-Optimized System for Pharmacogenomic Decision
Support at the Point-of-Care*
Jose Antonio Miñarro-Giménez, Kathrin Blagec, Richard D. Boyce,
Klaus-Peter Adlassnig, Matthias Samwald
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0093769
With kind regards,
Matthias
[1
Matthias Samwald:
This is a reminder of the Clinical Pharmacogenomics teleconference
this Wednesday.
Please note that the meeting will start later than usual (12:00
Eastern time) to make it easier for participants on the westcoast of
the US to join. We will also use GoToMeeting instead of the
)*
Conveners:Michel Dumontier, Matthias Samwald
https://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Meetings/2014-04-22_Conference_Call
1. Please join my meeting.
https://global.gotomeeting.com/join/360351677
2. Use your microphone and speakers (VoIP) - a headset is recommended
How does this relate to / overlap with Shape Expressions?
http://www.w3.org/2013/ShEx/Primer
- Matthias
Am 14.04.2014 18:21, schrieb Michel Dumontier:
Folks,
The W3C has received a member submission from IBM to specify the
shape of RDF resources [1]. The shape of an RDF resource is a
desc
*From:*public-semweb-lifesci-requ...@listhub.w3.org
[mailto:public-semweb-lifesci-requ...@listhub.w3.org] *On Behalf Of
*Matthias Samwald
*Sent:* Wednesday, January 15, 2014 9:43 AM
*To:* public-semweb-lifesci@w3.org
*Subject:* Re: Reminder: Pharmacogenomics teleconference this Wednesday
We had
Matthias Samwald:
This is a reminder of the Pharmacogenomics teleconference this
Wednesday, the first of this year.
Cheers,
Matthias
Meeting: Clinical Pharmacogenomics
Date: Janury 15, 2014
Time: 10:15 Eastern Time (16:15 Central European Time)
Conveners:Michel
This is a reminder of the Pharmacogenomics teleconference this
Wednesday, the first of this year.
Cheers,
Matthias
Meeting: Clinical Pharmacogenomics
Date: Janury 15, 2014
Time: 10:15 Eastern Time (16:15 Central European Time)
Conveners:Michel Dumontier, Matthias
The meeting minutes of the teleconference today can be found at
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Meetings/2013-11-27_Conference_Call
Cheers,
Matthias
:Michel Dumontier, Matthias Samwald
Dial-In #:+1.617.761.6200 (Cambridge, MA)
VoIP address:sip:za...@voip.w3.org
Participant Access Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS
URL:
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Meetings/2013-11-27_Confe
, but at least they
serve as an entry point to other datasets in Bio2RDF (such as PharmGKB). We
mapped to these identifiers.
Cheers,
Matthias
From: Remzi Celebi
Sent: Sunday, September 01, 2013 1:05 PM
To: Matthias Samwald
Cc: Tom Morris ; Joanne Luciano ; Robert, Ph.D. Freimuth ; Joanne
I have to correct myself. The link on rpi.edu (probably uploaded by Joanne)
points to a draft of the paper. I uploaded the final version of the paper to
http://samwald.info/res/samwald_medinfo2013_final.pdf
Sorry,
Matthias
Tom Morris wrote:
> Any links to the paper/presentation? Are these
Tom Morris wrote:
> Any links to the paper/presentation? Are these them?
> http://tw.rpi.edu/media/2013/03/14/2b0f/Medinfo2013_JSL.pdf
> http://www.slideshare.net/matthiassamwald/samwald-medinfo-2013-presentation-25478857
Yes!
Cheers,
Matthias
Michel,
There seems to be a Protege plugin available for download at
http://code.google.com/p/more-reasoner/downloads/list
I will try running MORe with the Genomic CDS ontology to see how it compares
with TrOWL. Looking forward to meet you all and discuss these exciting new
developments in the
Dear all,
Because the past has shown that too many participants are unavailable
throughout the summer months, there will be no Clinical Pharmacogenomics
teleconferences until September. Please use the mailing list or private e-mails
for ad-hoc discussions during this time.
Have a nice summer!
"Over 70 leading health care, research, and disease advocacy organizations that
together involve colleagues in over 40 countries have taken the first steps to
form an international alliance dedicated to enabling secure sharing of genomic
and clinical data. "
News item: https://www.broadinstitut
The minutes of the teleconference are available at
http://www.w3.org/2013/06/05-hcls-minutes.html
Cheers,
Matthias
e and need help? Do you have new
suggestions?
Meeting: Clinical Pharmacogenomics
Date: June 05, 2013
Time: 10:15 Eastern Time (16:15 Central European Time)
Frequency:1st and 3rd Wednesday of the month
Conveners:Michel Dumontier, Matthias Samwald
Dial-In #:+1.61
The meeting minutes can be found on the wiki at
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Meetings/2013-05-15_Conference_Call
The discussion on "Big Data Needs in Clinical Genomics" was postponed to the
next call.
Cheers,
Matthias
From: Matthias Samwald
Sent: Wednesday, Ma
the month
Conveners:Michel Dumontier, Matthias Samwald
Dial-In #:+1.617.761.6200 (Cambridge, MA)
VoIP address: sip:za...@voip.w3.org
Participant Access Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS
URL:
http://www.w3.org/wiki/HCLSIG/Pharmacogenom
The meeting minutes and some notes about plans for the next months are now
available on the meeting wiki page:
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Meetings/2013-05-01_Conference_Call
The discussion was very productive and there was not enough time to discuss
everything. We will contin
2013
http://ore2013.cs.manchester.ac.uk/ (Deadline 3rd of May!!)
Meeting: Clinical Pharmacogenomics
Date: May 01, 2013
Time: 10:15 Eastern Time (16:15 Central European Time)
Frequency:1st and 3rd Wednesday of the month
Conveners:Michel Dumontier, Matthias Samwald
The meeting minutes are available at
http://www.w3.org/2013/04/03-HCLS-minutes.html
Cheers,
Matthias
From: Matthias Samwald
Sent: Wednesday, April 03, 2013 2:56 PM
To: public-semweb-lifesci@w3.org
Subject: Reminder: Clinical Pharmacogenomics Teleconference
This is a reminder of the
from Joanne Luciano, Richard Boyce, others)
Meeting: Clinical Pharmacogenomics
Date: April 03, 2013
Time: 10:15 Eastern Time (16:15 Central European Time)
Frequency:1st and 3rd Wednesday of the month
Conveners:Michel Dumontier, Matthias Samwald
Dial-In
Dear all,
Since some of the usual participants are visting (and presenting at) the AMIA
Joint Summit this week, the clinical pharmacogenomics teleconference today is
canceled.
Best,
Matthias
Dear all,
It turns out that the meeting place near CSHALS we originally had in mind is
not really fit for accommodating a F2F meeting. Instead, we are having the
meeting in the CSHALS lunch area during lunch time. Unfortunately, this means
that only participants registered for CSHALS can partic
Michel and I decided to cancel the teleconference today -- sorry for the short
notice.
The next teleconference will be held in two weeks, on March 06. Feel free to
add suggested agenda items to
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Meetings/2013-03-06_Conference_Call
Cheers,
Matthias
Dear Steven,
Thanks for the hint, this sounds like a very good idea.
Best,
Matthias
From: Steven Leard
Sent: Thursday, February 07, 2013 3:57 PM
To: Matthias Samwald
Cc: Steven Leard ; Luciano, Joanne S. ; Ted Slater ; Michel Dumontier ;
public-semweb-lifesci hcls ; Charlie Mead ; Eric
;
Charlie Mead ; Eric Prud'hommeaux ; Matthias Samwald
Subject: Re: Local HCLS meeting during CSHALS on Friday March 1, 2013
hi Joanne, Matthias Samwald has already been in touch with me regarding holding
a meeting on Wednesday evening on W3C Health Care and Life Science F2F meeting.
I believe yo
, Matthias Samwald
Dial-In #:+1.617.761.6200 (Cambridge, MA)
VoIP address: sip:za...@voip.w3.org
Participant Access Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS
Suggested Agenda
a.. PK Ontology
b.. Discussing a potential HCLS IG / task force meetup around CSHA
I created a wiki page for planning the face-to-face meeting:
http://www.w3.org/wiki/HCLSIG/Cambridge_F2F_2013
Please add your name if you are interested in attending (I already added the
names of those who replied via e-mail).
I guess we don't know yet know how many interested participants we wil
From: Atif Khan
Sent: Wednesday, January 16, 2013 2:13 PM
To: Matthias Samwald
Cc: HCLS
Subject: Re: Reminder: Clinical Pharmacogenomics teleconference
I second the motion to change the meeting time to 10:00 AM.
Also in the meeting invite the 'Frequency' description mentions &
Dear all,This is a reminder of the teleconference on Clinical Pharmacogenomics,
starting today at 11:00 Eastern Time.Meeting: HCLS Pharmacogenomics
Date: January 16, 2013
Frequency:1st and 3rd Thursday of the month
Convener: Michel Dumontier, Matthias Samwald
Dial-In
Dear all,
The Clinical Pharmacogenomics Telecon today is canceled, since some key persons
are not able to attend. The next call is scheduled for January 16, next year.
Best,
Matthias
vel?
3. We should be generating linked data -> Warfarin can point to any of :
drugbank or SPL (since PharmGKB and PubChem gets their drug information from
DrugBank). Since Bio2RDF hosts Drugbank, we could use those URIs.
m.
On Wed, Nov 21, 2012 at 10:19 AM, Matthias Samwald
wrote:
(Paris, France)
Dial-In #: +44.203.318.0479 (London, UK)
Participant Access Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS
Duration: 1h
Conveners: Michel Dumontier & Matthias Samwald
== Agenda ==
* News about the Genomic CDS ontology (http://www.g
.org/ontologies/3179
Needless to say, all of this is just a partial research prototype. Not all
required information is in the ontology, some information might be several
months out of date, and accuracy and quality have not been validated.
We can discuss the ontology in today's teleconfe
Dear all,
Please note that the Clinical Decision Support teleconference today is
cancelled.
I can report that I am close to finalizing the first release of the ontology
for pharmacogenomics-based clinical decision support, including an OWL 2-based
representation of clinical guidelines of the C
The minutes of the CDS call are available at
http://www.w3.org/2012/10/11-hcls-minutes.html
Thanks to Bob Powers for scribing.
- Matthias
From: Matthias Samwald
Sent: Thursday, October 11, 2012 5:00 PM
To: public-semweb-lifesci@w3.org
Subject: Reminder: CDS Telecon about to start
Dear
Dear all,
This is a reminder that the CDS teleconference is about to start right now.
- Matthias
Dear all,
The Clinical Decision Support teleconference today is cancelled (conflicting
schedules).
Best,
Matthias
S (see W3C IRC page for details,
or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1h
Convener: Matthias SamwaldCheers,Matthias Samwald
From: Alejandro Rodríguez González
Sent: Wednesday, September 12, 2012 12:19 PM
To: public-semweb-lifesci@w3.org ; semantic-
The meeting minutes are available at
http://www.w3.org/2012/08/23-hcls-minutes.html
Thanks to Eric and Scott for scribing.
Cheers,
Matthias
From: Matthias Samwald
Sent: Thursday, August 23, 2012 1:01 PM
To: public-semweb-lifesci@w3.org
Subject: Teleconference Reminder: Clinical Decision
quot;)
IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details,
or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1h
Convener: Matthias Samwald
Peter wrote:
> Using both SQL and subsumption you can automatically find things like this:
> "find all disorders that are a kind of adverse drug reaction where drug is a
> subtype of antibiotic and was given for a kind of gram negative bacterial
> infection of the digestive system".
Simple sub
The CDS teleconference tomorrow is cancelled.
(once again, let's reduce the number of teleconferences while several people
are on vacation over the summer months, and use e-mail instead)
Cheers,
Matthias
C page for details,
or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1h
Convener: Matthias Samwald
The CDS teleconference today is cancelled.
(let's reduce the number of teleconferences now that several people are on
vacation over the summer months, and use e-mail instead)
Cheers,
Matthias
he area).
4) The generation of http://schema.org/MedicalCode entities needs to be fixed.
Also, we need to check how we can align with controlled vocabularies that
already have URIs (e.g. to BioPortal taxonomies)
5) General clean-up, code formatting and improvement of web design
Cheers,
Matthias Samwald
The meeting minutes are available at:
http://www.w3.org/2012/06/28-hcls-minutes.html
Cheers,
Matthias
From: Matthias Samwald
Sent: Wednesday, June 27, 2012 11:58 PM
To: public-semweb-lifesci@w3.org
Subject: Teleconference Reminder: Clinical Decision Support for Personalized
Medicine
(London, UK)
Participant Access Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details,
or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1h
Convener: Matthias Samwald
g the transformation
as simple Java code...
Cheers,
Matthias
[1] http://rhizomik.net/html/redefer/
From: Matthias Samwald
Sent: Friday, June 01, 2012 6:05 PM
To: public-semweb-lifesci@w3.org
Subject: Meeting minutes: Schema.org Discussion
The minutes of the call are available at
http://www.w
Hi Richard,
Thanks for digging this up. As a reminder: aTags = a convention for using
the SIOC vocabulary for the simple representation of scientific assertions
annotated with terms from controlled vocabularies.
The aTag website fell in disrepair when I left DERI (a fate of so many
research
The meeting minutes are available at
http://www.w3.org/2012/06/14-hcls-minutes.html
Thanks to Eric for scribing.
- Matthias
From: Matthias Samwald
Sent: Wednesday, June 13, 2012 6:23 PM
To: public-semweb-lifesci@w3.org
Cc: Gökhan Karakülah
Subject: Teleconference Reminder: Clinical
I would also be interested in extending this with data extracted from
European product labels. Compared to the US and Dailymed, this is far
trickier. The data is not openly available for many countries, content has
different languages, and structured product labels are even harder to come
by.
start: Click on mibbit for instant IRC access
Duration: 1h
Convener: Matthias Samwald
The minutes of the call are available at
http://www.w3.org/2012/06/01-HCLS-minutes.html
Unfortunately, only the second half of the call (after Aaron joined) is
captured in the minutes.
Cheers,
Matthias
ing.ttl
[5] http://khresmoi.eu/
Best,
Matthias
From: Matthias Samwald
Sent: Monday, May 21, 2012 1:35 PM
To: Aaron Brown
Cc: Dan Brickley ; public-semweb-lifesci@w3.org
Subject: RDF Schema / LODD mapping -- Re: New proposal: health & medical
extensions to schema.org
Dear Aaron,
I think
Dear all,
I have to cancel the Clinical Decision Support Teleconference this Thursday
(because of conflicting schedules). I will follow up with an e-mail on recent
progress.
Best,
Matthias
quot;Luciano, Joanne S."
Cc: "Solbrig, Harold R." ; "R. Cornet"
; "Michel Dumontier" ;
"Freimuth, Robert, Ph.D." ; "Jim McCusker"
; "Aaron Brown" ; "Dan
Brickley" ; "Renato Iannella" ;
"Lin MD, Simon"
a
[2] http://schema.org/docs/schemaorg.owl
[3] http://schema.rdfs.org/all.ttl
Cheers,
Matthias Samwald
From: Michel Dumontier
Sent: Wednesday, May 16, 2012 4:05 PM
To: w3c semweb hcls
Cc: Aaron Brown ; Dan Brickley
Subject: New proposal: health & medical extensions to schema.org
Hi all,
a
[2] http://schema.org/docs/schemaorg.owl
[3] http://schema.rdfs.org/all.ttl
Cheers,
Matthias Samwald
From: Michel Dumontier
Sent: Wednesday, May 16, 2012 4:05 PM
To: w3c semweb hcls
Cc: Aaron Brown ; Dan Brickley
Subject: New proposal: health & medical extensions to schema.org
Hi all,
Hi Michel,
Last time I checked schema.org I researched whether it contained any vocabulary
for capturing basic scientific statements/assertions/hypotheses, similar to
aTags and the various formats created by participants of the SciDisc task force
and the Nanopublications project. I found that
#: +33.4.26.46.79.03 (Paris, France)
Dial-In #: +44.203.318.0479 (London, UK)
Participant Access Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details,
or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1h
Convener: Matthi
Hi Richard,
>Were the entries blank in "Germ-line genetic marker (curated SNPs)" because
>the 2C9 variants were not present in a curated resource?
We discussed this a bit after you had left. Some entries for curated SNPs in
[1] are blank because the warfarin drug label there refers to CPY2C9*1
partial
implemntation in recent versions of AllegroGraph).
Cheers,
Matthias
--
From: "Jerven Bolleman"
Sent: Thursday, April 26, 2012 4:44 PM
To: "Matthias Samwald"
Subject: Re: Teleconference Reminder: Clinical Decision Suppo
ss Code: 4257 ("HCLS")
IRC Channel: irc.w3.org port 6665 channel #HCLS (see
[http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see
[http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
Mibbit quick start: Click on
[http://www.mibbit.com/chat/?server=irc.w3.org:6665&cha
This sounds like a good idea, Elgar (especially since we already have a Google
Calendar that is poorly advertised and not updated when meetings are
cancelled). It also seems like you can change the description of each event
separately (even though they are recurring), so the agenda could probabl
e TMO ontology itself?
@Michel: I tried to link to your Bio2RDF version of dbSNP, currently only via
rdfs:seeAlso links to your dev server (the data still does not seem to be
available on the public Bio2RDF server. We should try to do this properly as
soon as possible.
- Matthias
From: Matthias Sa
HCLS (see
[http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see
[http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
Mibbit quick start: Click on
[http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls mibbit] for
instant IRC access
Duration: 1h
Convener
Dear all,
The CDS call today is cancelled -- several people (including myself) are still
at the AMIA Summit and can't make it.
Cheers,
Matthias
Regarding visualisation of Linked Data, it should be avoided to fall victim to
what was called "the pathetic fallacy of RDF" in one publication [1], i.e.,
visualising RDF data as graphs because the underlying datamodel is a graph, not
because the use-case at hand requires this kind of visualisat
contribute your ideas
and help to shape the work that will be done over the next year!
http://www.w3.org/wiki/HCLSIG/CDS
Cheers,
Matthias Samwald
Conference Details
Clinical Decision Support for Personalized Medicine
http://www.w3.org/wiki/HCLSIG/CDS
Date of Call: Thursday March 8 2012
Time
Several people sent their regrets, so we will cancel the teleconference today.
I suggest we coordinate further action via the mailing list or Google Group.
The next teleconference will be on January 5 next year.
Cheers,
Matthias
From: Matthias Samwald
Sent: Wednesday, December 21, 2011 3:04
Hi Lena,
"Although this was not achieved using the LODD cloud or semantic web
technologies, it illustrates the same type of network analysis that we are
trying to enable for linked life sciences and health care data. "
Then it is a problematic example -- after all this could also be interpreted
lational
Medicine Ontology for pharmacogenomics and personalized medicine and applying
OWL reasoning for clinical decision support.
''' Minutes '''
Thanks to Bob Powers for scribing the minutes for last week:
http://www.w3.org/2011/12/15-hcls2-minutes.html
Cheers,
Matthias Samwald
&channel=%23hcls2 mibbit]
for instant IRC access
* Duration: 1h
* Convener: Matthias Samwald
next week on December 15.
With kind regards,
Matthias Samwald
I think we should find some mode of operation where all the documents are in
the wiki. The split between wiki and Google-Docs seems problematic (especially
when each use-case doc is shared differently).
- Matthias
From: Michel Dumontier
Sent: Sunday, October 09, 2011 10:18 PM
To: boy...@u.w
Dear Michel, all,
I will not be available on Thursday during the entire day. Please go ahead and
edit the manuscript where you see fit. Currently I am still pondering on the
best visual metaphor for explaining how OWL reasoning can help with classifying
individual patients into classes based on
Besides the ontologies already mentioned, the unit ontology / UO
(http://obofoundry.org/cgi-bin/detail.cgi?id=unit) also has a class for "mole"
and one for "molar mass unit". But you actually wanted a URI for a datatype so
this (as well as the other ontologies mentioned before) is probably not w
I will look at it again. Is there an open source implementation by the
way? I have been using SPARQL CONSTRUCT queries to do virtually
everything that I thought SPIN could do, with a more familiar
notation. I didn't find the SPIN notation easy to understand.
Yes, the way SPARQL is formulated wit
Hi Peter,
Great work! On the example page you provided
(http://bio2rdf.org/page/geneid:12334) I also see properties such as
http://purl.org/science/owl/sciencecommons/describes_gene_or_gene_product_mentioned_by
which come from the Science Commons KB (and the HCLS Knowledge Base
developed in t
Eric wrote:
Join me tomorrow at the usual time (11.00 EDT, 15.00Z)?
I somehow missed that sentence and was not aware of the HCLS telecon
today -- sorry I didn't attend!
- Matthias
The minutes of the teleconference can be viewed at
http://www.w3.org/2011/06/09-hcls2-minutes.html
Thanks to Bob for scribing (once again!)
Cheers,
Matthias
From: Matthias Samwald
Sent: Thursday, June 09, 2011 2:25 PM
To: public-semweb-lifesci@w3.org
Subject: Re: TM conference call
Dear
ortunately, Michel and Scott cannot join the meeting today.
Thanks to Bob Powers for scribing last week's
[http://www.w3.org/2011/06/02-hcls2-minutes.html minutes]
Cheers,
Matthias Samwald
// http://samwald.info
I agree with Tim's ideas. The different task forces should be problem-focused.
This would also help to reduce the redundancy between task forces (for example,
the original idea of BioRDF was mainly to convert biomedical data to RDF, but
over the years this also became a major focus of other task
Five databases have a non-commercial clause involved, making it Open
according to the LODD definitions (correct?), but not Open following
the OFKN's standards. The original plan was to set up an informative
package of information explaining why the NC clause causes problems,
but we did not get aro
The references to Linked Data applications in the life sciences could be
improved in the next revision of the (otherwise great) book.
Quote:
"A Life Science application that relies on knowledge from more than 200
publicly available ontologies in order to support its users in exploring
biomedic
Very interesting indeed. It is unfortunate that the deadline is so close!
- Matthias
From: Helena Deus
Sent: Sunday, February 27, 2011 2:13 PM
To: public-semweb-lifesci@w3.org
Subject: call for paper in pharmacogenomics - Journal of Biomedical Informatics
This call for papers may be in
Hi Eric,
I'm not an expert, but this seems a bit hard to answer. Bapineuzumb does not
seem to bind or directly regulate Apolipoprotein and its variants. The APOE4
allele is merely a biomarker which can be used to stratify the patient
population into likely responders and non-responders. Lookin
ich new players can participate (by "publishing"), not as one
limited to a vocabulary
controlled by the government"
Cheers,
Matthias Samwald
// DERI Galway, Ireland
// Information Retrieval Facility, Austria
// http://samwald.info
bases like Freebase."
Cheers,
Matthias Samwald
// DERI Galway, Ireland
// Information Retrieval Facility, Austria
// http://samwald.info
other ideas by LODD participants.
The deadline for submission is November 29. Given that this should be a rather
condensed paper, it currently seems achievable to finish the paper in time.
Please use the Google-Doc to collect ideas and text snippets.
Cheers,
Matthias Samwald
// DERI Galway, Ir
risk, drug efficacy or risk
of adverse events based on imprecise reasoning.
Cheers,
Matthias Samwald
// DERI Galway, Ireland
// Konrad Lorenz Institute for Evolution and Cognition Research, Austria
// http://samwald.info
--
From: "Joanne Lu
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