Re: [R] Partial function application in R

2009-01-15 Thread Wacek Kusnierczyk
czesc, looks like you want some sort of currying, or maybe partial currying, right? anyway, here's a quick guess at how you can modify your bind, and it seems to work, as far as i get your intentions, with the plot example you gave: bind = function(f, ...) { args = list(...) function(...)

[R] New Statistical Learning and Data Mining Course

2009-01-15 Thread Trevor Hastie
Short course: Statistical Learning and Data Mining III: Ten Hot Ideas for Learning from Data Trevor Hastie and Robert Tibshirani, Stanford University Sheraton Hotel Palo Alto, CA March 16-17, 2009 This two-day course gives a detailed overview of statistical models for data mining, in

Re: [R] XYplot in Lattice Package

2009-01-15 Thread David Winsemius
On Jan 15, 2009, at 9:27 PM, jimdare wrote: Dear R-Users I have 2 questions to do with XYplot. 1) I am trying to use the XYplot function to generate multiple line graphs with the legend outside the plot. I am using the following loop for each graph: library(lattice) for (i in x.sp){ xy

[R] Project Robust & Linier Regresssion

2009-01-15 Thread Edwin Wibisono
Hello, I'm EDWIN, I create (make) GUI, with call many function but I don't know why when I call function I can't. if without function, Yes I can.. can you help me ? can you make this, become true with full code? Can you help me to create data.entry with interface LM - BETA1.HAT - BETA2.HAT SD.BET

Re: [R] Security Data extraction

2009-01-15 Thread Saeed Abu Nimeh
Subba Rao wrote: > Hi, > > Today I came across the R application and I will admit I am not a > Statistician. However, I think this application will be useful for me > at work. I am a Network/System Security Engineer trying to make sense > of the huge security data I collect. I am trying to visu

[R] XYplot in Lattice Package

2009-01-15 Thread jimdare
Dear R-Users I have 2 questions to do with XYplot. 1) I am trying to use the XYplot function to generate multiple line graphs with the legend outside the plot. I am using the following loop for each graph: library(lattice) for (i in x.sp){ xyplot(Catch~Year, df, groups = Stock, type="a",aut

[R] PDF slided (beamer or prosper) to an editable PPT

2009-01-15 Thread zubin
Hello, I am getting requests to place our PDF slides (output from beamer) into Microsoft Powerpoint formats (.ppt). What's the best practice or any recommended software packages (any success with open or commercial) that we can use to convert PDF slides into an EDITABLE powerpoint deck? Tha

Re: [R] Partial function application in R

2009-01-15 Thread Gabor Grothendieck
One other idea. The proto package also does currying. If f a method (i.e. an R function that takes an object as arg1 then p$f, i.e. the $.proto function, returns function(...) f(p, ...). Looking at the code for setDefaults as in my prior response and/or proto should give you some ideas. On Thu,

[R] Security Data extraction

2009-01-15 Thread Subba Rao
Hi, Today I came across the R application and I will admit I am not a Statistician. However, I think this application will be useful for me at work. I am a Network/System Security Engineer trying to make sense of the huge security data I collect. I am trying to visualize the traffic on our netw

Re: [R] Partial function application in R

2009-01-15 Thread nosek
Well, it looks like it's a perfectly correct approach to bind functions writing their wrappers by hand. But I don't want to write them by hand every time I need them. Being lambda expression, function() is most general, but there must be some kind of shorter way for such a common task as partial

Re: [R] Partial function application in R

2009-01-15 Thread Gabor Grothendieck
Have a look at the setDefaults package. It will set the default arguments of a function to whatever you specify so that if you omit them then those are the values you get for them. On Thu, Jan 15, 2009 at 4:25 PM, nosek wrote: > > Hello, > > in a desperate desire of using partial function applic

Re: [R] Partial function application in R

2009-01-15 Thread David Winsemius
How is function() not the correct approach? > plot_lines <- function(x, ...) plot(x, type="l", ...) > > plot_lines(1:10, xlim = c(1,5)) > plot_lines(1:10, 11:20, xlim = c(1,5)) Still seems to get the unnamed optional y argument to the plotting machinery. -- David Winsemius On Jan 15, 2009

Re: [R] user library help functionality (packages.html)

2009-01-15 Thread Duncan Murdoch
On 1/15/2009 12:50 PM, Jarrett Barber wrote: Here's another help file question. Some context: University setting wherein R is installed for availability to students and course instructors across campus in various PC labs. Windows Vista environment. Goal: To maximize flexibility and functi

[R] Partial function application in R

2009-01-15 Thread nosek
Hello, in a desperate desire of using partial function application in R I fried out the following piece of code: bind <- function( f, ... ) { args <- list(...) function(...) f( ..., unlist(args) ) } Its purpose, if not clear, is to return a function with part of its arguments bound to speci

Re: [R] Warning on assignment.

2009-01-15 Thread Sarah Goslee
It's the other way around. You are trying to replace 10 elements (x[i]) with 20 elements (y). R makes a "best guess" as to how you want to do that. 10 is not a multiple of 20. If you were trying to replace 20 elements with 10, then R would recycle them because 20 _is_ a multiple of 10. The safes

Re: [R] logistic regression - exp(estimates)?

2009-01-15 Thread Rolf Turner
On 16/01/2009, at 1:50 AM, gregor rolshausen wrote: hello. I have a question on the interpretation of a logistic model. is it helpful to exponentiate the coefficients (estimates)? I think I once read something about that, but I cannot remember where. if so, how would be the interpretation of

Re: [R] Precision in R

2009-01-15 Thread David Winsemius
On Jan 15, 2009, at 12:25 PM, Charles C. Berry wrote: This is what I get on windows XP: tcp1-tcp2 [,1] [,2] [,3] [1,] -2.861023e-06 -4.768372e-07 -4.768372e-07 [2,] -4.768372e-07 -3.814697e-06 2.622604e-06 [3,] -4.768372e-07 2.622604e-06 -5.960464e-08 bu

Re: [R] number of Mondays

2009-01-15 Thread Carlos Hernandez
Indeed, i overlooked weekdays. Thank you all for your replies! On Jan 15, 2009, at 21:23 , Prof Brian Ripley wrote: Or for those not allergic to reading help, see ?weekdays . Just how hard do you have to work to miss that? E.g. ??day works. On Thu, 15 Jan 2009, Peter Dalgaard wrote: Carl

Re: [R] Precision in R

2009-01-15 Thread Duncan Murdoch
On 1/15/2009 1:32 PM, David Winsemius wrote: On Jan 15, 2009, at 12:25 PM, Charles C. Berry wrote: This is what I get on windows XP: tcp1-tcp2 [,1] [,2] [,3] [1,] -2.861023e-06 -4.768372e-07 -4.768372e-07 [2,] -4.768372e-07 -3.814697e-06 2.622604e-06 [3,] -4.

Re: [R] user library help functionality (packages.html)

2009-01-15 Thread Jarrett Barber
Whoops! Yes, my last "help.search()" should have been "help.start()". Thanks again. -- Jarrett On Jan 15, 2009, at 1:27 PM, Duncan Murdoch wrote: On 1/15/2009 3:17 PM, Jarrett Barber wrote: This helps a lot. I have options(htmlhelp=TRUE) and options(chmhelp=FALSE) (else problems). Now

Re: [R] Precision in R

2009-01-15 Thread dos Reis, Marlon
Hi there, Thanks for the help. I see now where my results are coming from. Marlon. -Original Message- From: Charles C. Berry [mailto:cbe...@tajo.ucsd.edu] Sent: Friday, 16 January 2009 6:26 a.m. To: dos Reis, Marlon Cc: David Winsemius; r-help@r-project.org Subject: RE: [R] Precision in

Re: [R] user library help functionality (packages.html)

2009-01-15 Thread Duncan Murdoch
On 1/15/2009 3:17 PM, Jarrett Barber wrote: This helps a lot. I have options(htmlhelp=TRUE) and options(chmhelp=FALSE) (else problems). Now, ?, help(), and help.search() seem to work well. But, help.start() appears restricted to packages in the site library. I see, in the Help/FAQ on R f

Re: [R] number of Mondays

2009-01-15 Thread Prof Brian Ripley
Or for those not allergic to reading help, see ?weekdays . Just how hard do you have to work to miss that? E.g. ??day works. On Thu, 15 Jan 2009, Peter Dalgaard wrote: Carlos Hernandez wrote: dear All, i'm trying to calculate the number of Mondays, Tuesdays, etc that each month within a date

Re: [R] user library help functionality (packages.html)

2009-01-15 Thread Jarrett Barber
This helps a lot. I have options(htmlhelp=TRUE) and options(chmhelp=FALSE) (else problems). Now, ?, help(), and help.search() seem to work well. But, help.start() appears restricted to packages in the site library. I see, in the Help/FAQ on R for Windows/ Sections 4.3 and 4.4, that I ca

Re: [R] Odp: Moving a Data Frame Column

2009-01-15 Thread jimdare
Thanks, I knew it was something simple :) Petr Pikal wrote: > > Hi > > r-help-boun...@r-project.org napsal dne 15.01.2009 04:47:39: > >> >> Dear R-Users >> if I have a data frame (or zoo data) as follows: >> >> Run Bike Walk Drive >> 1 2 7 5 >> 5 2 4 2 >>

Re: [R] number of Mondays

2009-01-15 Thread Peter Dalgaard
Carlos Hernandez wrote: > dear All, > i'm trying to calculate the number of Mondays, Tuesdays, etc that each > month within a date range has. I have time series data that spans 60 > months and i want to calculate the number of Mondays, Tuesdays, Wed, etc > of each month. (I want to control for week

Re: [R] number of Mondays

2009-01-15 Thread Gabor Grothendieck
Try this: > library(zoo) # as.yearmon > dd <- seq(as.Date("2000-01-01"), as.Date("2004-12-31"), "day") > dow <- as.numeric(format(dd, "%w")) > ym <- as.yearmon(dd) > tab <- do.call(rbind, tapply(dow, ym, table)) > rownames(tab) <- format(as.yearmon(as.numeric(rownames(tab > head(tab)

Re: [R] number of Mondays

2009-01-15 Thread David Winsemius
On Jan 15, 2009, at 2:28 PM, Carlos Hernandez wrote: dear All, i'm trying to calculate the number of Mondays, Tuesdays, etc that each month within a date range has. I have time series data that spans 60 months and i want to calculate the number of Mondays, Tuesdays, Wed, etc of each month

Re: [R] number of Mondays

2009-01-15 Thread Roy Mendelssohn
?chron() in particular day.of.week -Roy On Jan 15, 2009, at 11:28 AM, Carlos Hernandez wrote: dear All, i'm trying to calculate the number of Mondays, Tuesdays, etc that each month within a date range has. I have time series data that spans 60 months and i want to calculate the number of M

[R] number of Mondays

2009-01-15 Thread Carlos Hernandez
dear All, i'm trying to calculate the number of Mondays, Tuesdays, etc that each month within a date range has. I have time series data that spans 60 months and i want to calculate the number of Mondays, Tuesdays, Wed, etc of each month. (I want to control for weekly seasonality but my dat

Re: [R] R, clinical trials and the FDA

2009-01-15 Thread Marc Schwartz
on 01/15/2009 11:42 AM David M Smith wrote: > On Sun, Jan 11, 2009 at 11:05 AM, Kingsford Jones > wrote: >> I hope that Marc doesn't mind, but I felt that part of his recent post >> was important enough to deserve it's own subject line rather then >> being lost in a 60-msg-long thread... > > I al

Re: [R] Warning on assignment.

2009-01-15 Thread Peter Dalgaard
rkevinbur...@charter.net wrote: > This was just an illustration. It is the warning message that I don't understand. The warning says "number of items to replace is not a multiple of replacement length". The way I look at it 10 is a multiple of 20. Um, with a multiplier of 0.5 ? You're trying to p

Re: [R] Warning on assignment.

2009-01-15 Thread rkevinburton
This was just an illustration. It is the warning message that I don't understand. The warning says "number of items to replace is not a multiple of replacement length". The way I look at it 10 is a multiple of 20. Kevin Sarah Goslee wrote: > The lengths are different, particularly the le

Re: [R] Warning on assignment.

2009-01-15 Thread Sarah Goslee
The lengths are different, particularly the length of subsetted x[i] > x <- 1:20 > i <- x %% 2 > 0 > y <- rep(1,20) > length(x) [1] 20 > length(i) [1] 20 > length(x[i]) [1] 10 > length(y) [1] 20 You happened to be lucky and got what you wanted, but a more reliable approach is: > x[i] <- y[i] S

[R] Warning on assignment.

2009-01-15 Thread rkevinburton
I have a question on whether a warning message is valid or if I just don't understand the process. Let me illustrate via some R code: x <- 1:20 i <- x %% 2 > 0 y <- rep(1,20) x[i] <- y Warning message: In x[i] <- y : number of items to replace is not a multiple of replacement length But it st

Re: [R] Bar Plot ggplot2 Filling bars with cross hatching

2009-01-15 Thread hadley wickham
This will be fixed in the next version, but until then you can do title = "Aquarium\n" Hadley On Wed, Jan 14, 2009 at 9:24 PM, stephen sefick wrote: > Also notice that the q in Aquarium is hidden. Is there a way to make > this not happen? > thanks > > Stephen Sefick > > On Wed, Jan 14, 2009 at

Re: [R] Bar Plot ggplot2 Filling bars with cross hatching

2009-01-15 Thread hadley wickham
Hi Stephen, > #I am putting a test together for an introductory biology class and I > would like to put different cross hatching inside of each bar for the > bar plot below ggplot2 uses the grid package to do all the drawing, and currently grid doesn't support cross-hatching, so unfortunately the

[R] user library help functionality (packages.html)

2009-01-15 Thread Jarrett Barber
Here's another help file question. Some context: University setting wherein R is installed for availability to students and course instructors across campus in various PC labs. Windows Vista environment. Goal: To maximize flexibility and functionality of installing add-on packages and as

Re: [R] R, clinical trials and the FDA

2009-01-15 Thread David M Smith
On Sun, Jan 11, 2009 at 11:05 AM, Kingsford Jones wrote: > I hope that Marc doesn't mind, but I felt that part of his recent post > was important enough to deserve it's own subject line rather then > being lost in a 60-msg-long thread... I also wanted to thank Marc for this wealth of information

Re: [R] Precision in R

2009-01-15 Thread Charles C. Berry
On Thu, 15 Jan 2009, dos Reis, Marlon wrote: I'm using: "solve(a, b, tol, LINPACK = FALSE, ...)" Therefore,tol ==.Machine$double.eps .Machine$double.eps [1] 2.220446e-16 It explains why 'solve' works for 'tcp1' but not for 'tcp2': eigen(tcp1)$values [1] 5.208856e+09 2.585816e+08 -3.660671e

Re: [R] interpolation to abscissa

2009-01-15 Thread David Winsemius
It appears the answer to your goal after a discursive exploration of "interpolation", which was really extrapolation, is that you need to look at the predict methods for linear (and other sorts as well) models. ?predict ?predict.lm > y <- c(16,45,77,101,125) > x <- c(0,5,10,15,20) > > lmmo

Re: [R] rimage installation problem-ubuntu 8.10

2009-01-15 Thread Dirk Eddelbuettel
On 15 January 2009 at 03:06, abbethesieyes wrote: | | (I'm quite afraid this is a dumb question, so sorry in advance) | I am trying to install the package rimage to R version 2.8.1 with Ubuntu | Intrepid. When I type "sudo R CMD INSTALL" I get the following error | message (pasted below). I know

Re: [R] using R how to read a one column alone from a database table from MySQL

2009-01-15 Thread Dieter Menne
sankar82 tkk.fi> writes: > i have a created a database table in MYSQL consisting of 11 columns. > throught RMYSQL i managed to read the entire table in R. but i have few > qureries which i need solutions...here they are: > > 1. Using R how to read a one column alone from a database table from MY

Re: [R] interpolation to abscissa

2009-01-15 Thread David Winsemius
On Jan 15, 2009, at 11:31 AM, e-letter wrote: Perhaps a coding error on my part (or on your part). Perhaps different methods (none of which you describe)? I suspect that my method only used the first two points (I just checked by plotting and -2.7 is closer to the paper and pen result I g

Re: [R] Using fortran code which call LAPACK subroutines

2009-01-15 Thread Matthieu Stigler
Prof Brian Ripley a écrit : On Tue, 13 Jan 2009, Charles C. Berry wrote: On Tue, 13 Jan 2009, Matthieu Stigler wrote: Hello I'm trying to run a fortran code which use LAPACK subroutines. I think I should use some points shown in the manual 5.5 Creating shared objects but it is too technica

[R] problems with extractPrediction in package caret

2009-01-15 Thread Häring, Tim (LWF)
Hi list, I´m working on a predictive modeling task using the caret package. I found the best model parameters using the train() and trainControl() command. Now I want to evaluate my model and make predictions on a test dataset. I tried to follow the instructions in the manual and the vignettes b

Re: [R] R on Vista

2009-01-15 Thread Duncan Murdoch
On 1/15/2009 6:53 AM, Ziqi wrote: Dear Sir/Madam, Thanks for the software. May I know that R can run on Vista system or not? Cause i donwload but cant install.. =( Thanks s much!! R can run on Vista. See the FAQ (online at http://cran.r-project.org/bin/windows/base/rw-FAQ.html, yo

Re: [R] interpolation to abscissa

2009-01-15 Thread e-letter
> Perhaps a coding error on my part (or on your part). Perhaps different > methods (none of which you describe)? > > I suspect that my method only used the first two points (I just > checked by plotting and -2.7 is closer to the paper and pen result I > get than is -3.28. Perhaps you made an extra

Re: [R] About Tcl/Tk after command in R

2009-01-15 Thread Peter Dalgaard
Duncan Murdoch wrote: > On 1/15/2009 10:18 AM, davide.massi...@unipd.it wrote: >> Dear R-helpers, >> I have a problem with the tcl "after" instruction. When I send: >> >>> library(tcltk) >> Loading Tcl/Tk interface ... done >> >>> tcl("after",1000,cat("try tcl after\n")) >> try tcl after >> >> >>

Re: [R] interpolation to abscissa

2009-01-15 Thread David Winsemius
On Jan 15, 2009, at 10:04 AM, e-letter wrote: On 13/01/2009, David Winsemius wrote: It's fairly clear from the documentation that approxfun() will not extrapolate. help.search("extrapolate") library(Hmisc) ?approxExtrap Some sort of minimization approach: approxExtrap(x=c(0,5,10,15,20),

[R] R on Vista

2009-01-15 Thread Ziqi
Dear Sir/Madam, Thanks for the software. May I know that R can run on Vista system or not? Cause i donwload but cant install.. =( Thanks s much!! -- Best Regards, Ivy [[alternative HTML version deleted]] __ R-help@r-project.org m

[R] rimage installation problem-ubuntu 8.10

2009-01-15 Thread abbethesieyes
(I'm quite afraid this is a dumb question, so sorry in advance) I am trying to install the package rimage to R version 2.8.1 with Ubuntu Intrepid. When I type "sudo R CMD INSTALL" I get the following error message (pasted below). I know the same problem appears here (http://www.r-project.org/nosv

[R] using R how to read a one column alone from a database table from MySQL

2009-01-15 Thread sankar82
hello friends i have a created a database table in MYSQL consisting of 11 columns. throught RMYSQL i managed to read the entire table in R. but i have few qureries which i need solutions...here they are: 1. Using R how to read a one column alone from a database table from MYSQL. 2. Using R how t

Re: [R] LCA (e1071 package): error

2009-01-15 Thread Richard . Cotton
> I will use the lca method in the e1071 package. But I get the following error: > Error in pas[j, ] <- drop(exp(rep(1, nvar) %*% log(mp))) : > number of items to replace is not a multiple of replacement length > > Does anybody know this error and knows what this means? The error means that yo

Re: [R] Summary of Total Object.Size in R Script

2009-01-15 Thread Henrik Bengtsson
See also ll() in the R.oo package, e.g. # To list all objects in .GlobalEnv: ll() member data.class dimension objectSize 1*tmp* Person 1 428 2 as.character.Person function NULL1208 3 country character 1

Re: [R] About Tcl/Tk after command in R

2009-01-15 Thread Duncan Murdoch
On 1/15/2009 10:18 AM, davide.massi...@unipd.it wrote: Dear R-helpers, I have a problem with the tcl "after" instruction. When I send: library(tcltk) Loading Tcl/Tk interface ... done tcl("after",1000,cat("try tcl after\n")) try tcl after the tcl command works fine. Similarly, the tcl com

Re: [R] Time Series

2009-01-15 Thread Gabor Grothendieck
Try this: library(chron) times("9:00:00") + 0:479/(24*60) Also see R News 4/1 and read the help pages in chron. If you eventually want to use these times with corresponding series data look at the zoo package. On Thu, Jan 15, 2009 at 10:01 AM, Andrew Choens wrote: > If I want to make a numeric

Re: [R] Confidence Intervals for Poisson

2009-01-15 Thread David Winsemius
On Jan 15, 2009, at 1:10 AM, John Kerpel wrote: Hi folks! I run the following code to get a CI for a Poisson with lambda=12.73 library(MASS) set.seed(125) x <- rpois(100,12.73) lambda_hat<-fitdistr(x, dpois, list(lambda=12))$estimate #Confidence Intervals - Normal Approx. alpha<-c(.05,.02

[R] About Tcl/Tk after command in R

2009-01-15 Thread davide . massidda
Dear R-helpers, I have a problem with the tcl "after" instruction. When I send: > library(tcltk) Loading Tcl/Tk interface ... done > tcl("after",1000,cat("try tcl after\n")) try tcl after the tcl command works fine. Similarly, the tcl command: > tcl("after",1000,plot(rnorm(100))) works fine.

Re: [R] interpolation to abscissa

2009-01-15 Thread e-letter
On 13/01/2009, David Winsemius wrote: > It's fairly clear from the documentation that approxfun() will not > extrapolate. > > help.search("extrapolate") > library(Hmisc) > ?approxExtrap > > Some sort of minimization approach: > > > approxExtrap(x=c(0,5,10,15,20), y=c(16,45,77,101,125),xout=c(-4,0

[R] Time Series

2009-01-15 Thread Andrew Choens
If I want to make a numerical series, I can do so easily with: series.numbers <- 1:10 But, I don't seem to be able to do the same with time. I want to create a vector with 480 points that corresponds to the 480 minutes in a 8 hour work day. Thus I want series.time to look something like t

Re: [R] Seemingly Unrelated Negative Binomial (SUNB) estimation

2009-01-15 Thread Ben Bolker
Elisa Lanzi unive.it> writes: > > Dear all, > I am trying to estimate a system of equations with a Seemingly Unrelated > Regression. However because of the characteristics of the data I'd like to > do it with a negative binomial estimation. Would anybody know how to > implement a Seemingly Unrel

[R] binary_matrix_to_ascii_dendrogram

2009-01-15 Thread Luciano Bernardes
Hi, I have a binary matrix and I would like from it make a cluster by agglomerative method (like agnes), and then generate a ascii art dendrogram. See the illustration: binary matrixascii art dendrogram ABCDEFGH P1 0101011101

[R] quantile regression using SemiPar package

2009-01-15 Thread Suyan Tian
Hi everyone: I want to fit the truncated polynomial smoothing to the quantiles instead of means, does someone know how to do it? I am thinking that maybe I can use SemiPar package, but can not find how. Thanks so many, Suyan __ R-help@r-project.

[R] LCA (e1071 package): error

2009-01-15 Thread Tryntsje Wesselius
Hello, I will use the lca method in the e1071 package. But I get the following error: Error in pas[j, ] <- drop(exp(rep(1, nvar) %*% log(mp))) : number of items to replace is not a multiple of replacement length Does anybody know this error and knows what this means? Kind regards, Tryntsje _

[R] how to get the signed distance in SVM?

2009-01-15 Thread David Meyer
Dear Qing, look at the file "svminternals.txt" in the /doc subdirectory of the installed e1071 package (or inst/doc in the source package), that should help. David > > In the svm() function in the package e1071, is there anyway to get the > signed distance of a sample point to the separating

Re: [R] power analyses for mixed effects lmer models

2009-01-15 Thread LeeDetroit
Greg and Ben, Thanks for the suggestions. I'll give it a try, and I'll also poke around to find the r-sig-mixed-models list. What a wonderful world we live in that such a thing exists! --Lee -- View this message in context: http://www.nabble.com/power-analyses-for-mixed-effects-lmer-models-tp2

Re: [R] Precision in R

2009-01-15 Thread David Winsemius
I'm not getting that difference: > .Machine$double.eps [1] 2.220446e-16 # so I don't think that explains the different behavior. > WB<-as.matrix(read.table(file.choose())) > tcp1 <- tcrossprod(WB) > tcp2 <- crossprod(t(WB)) > tcp1 [,1] [,2] [,3] [1,] 1916061939 2281366606

[R] autocorrelation

2009-01-15 Thread jan nowak
Hi Is any multiple regression-like test with correction for autocorrelation ? Wojciech [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http:

Re: [R] Linked count between matrix columns

2009-01-15 Thread Henrique Dallazuanna
Because we want the values in table(x[,2]) where the **names** are as.character(x[,1][x[,1] > 0])], not the positions x[,1][x[,1] > 0])]. Best On Thu, Jan 15, 2009 at 10:59 AM, Guillaume Chapron < carnivorescie...@gmail.com> wrote: > table(x2)[as.character(x[,1][x[,1] > 0])] >> > > Why do I need

Re: [R] Linked count between matrix columns

2009-01-15 Thread Guillaume Chapron
Because we want the values in table(x[,2]) where the **names** are as.character(x[,1][x[,1] > 0])], not the positions x[,1][x[,1] > 0])]. Thanks! __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the p

Re: [R] Linked count between matrix columns

2009-01-15 Thread Guillaume Chapron
table(x2)[as.character(x[,1][x[,1] > 0])] Why do I need as.character() here? I checked it does not work without, but I don't see why. The help says "as.character attempts to coerce its argument to character type". Thanks very much! Guillaume __

Re: [R] radial.plot(plotrix) - plotting multiple polygons?

2009-01-15 Thread Stefan Uhmann
Dear List, Dear Jim, is it possible to draw multiple polygons with different line types? lty=c or line.lty=c do not work with radial.plot (in the matrix case) as well as add=TRUE. Stefan Jim Lemon schrieb, Am 14.11.2008 10:38: Jeremy Claisse wrote: Is it possible to plot multiple polygons

Re: [R] Linked count between matrix columns

2009-01-15 Thread Henrique Dallazuanna
Guillaume, # First, you need "extract" the values of x[,1] greater than 0: x[,1][x[,1] > 0] # After, you want the number of times that appears in the second column: table(x2) # but only to values above: table(x2)[as.character(x[,1][x[,1] > 0])] # Now, just put the values in column 2: x[,2][x[,1

Re: [R] misalignment of x-axis when overlaying two plots using latticeExtra

2009-01-15 Thread Felix Andrews
Hi Sean, as.layer() does not do what you think it does: it does not attempt to plot things on a common scale, it simply draws the panels of two lattice plots in the same space. Actually, it is not very useful on its own. What you want is doubleYScale() in the development version (0.5-5) of lattic

[R] logistic regression - exp(estimates)?

2009-01-15 Thread gregor rolshausen
hello. I have a question on the interpretation of a logistic model. is it helpful to exponentiate the coefficients (estimates)? I think I once read something about that, but I cannot remember where. if so, how would be the interpretation of the exp(estimate) ? would there be a change of the i

Re: [R] Linked count between matrix columns

2009-01-15 Thread Guillaume Chapron
Thank you! This is exactly what I wanted. Could you please explain the logic behind your code? x[,2][x[,1][x[,1] > 0]] <- table(x[,2])[as.character(x[,1][x[,1] > 0])] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-he

Re: [R] Linked count between matrix columns

2009-01-15 Thread Henrique Dallazuanna
Try this: x[,2][x[,1][x[,1] > 0]] <- table(x[,2])[as.character(x[,1][x[,1] > 0])] On Thu, Jan 15, 2009 at 10:36 AM, Guillaume Chapron < carnivorescie...@gmail.com> wrote: > Hello, > > I create this array: > > x <- cbind(c(1:4, rep(0,10)), c(rep(0,4), 1:2, rep(3,6), 4,5)) > > [,1] [,2] > [1

[R] Linked count between matrix columns

2009-01-15 Thread Guillaume Chapron
Hello, I create this array: x <- cbind(c(1:4, rep(0,10)), c(rep(0,4), 1:2, rep(3,6), 4,5)) [,1] [,2] [1,]10 [2,]20 [3,]30 [4,]40 [5,]01 [6,]02 [7,]03 [8,]03 [9,]03 [10,]03 [11,]03 [12,]0

Re: [R] How to create a chromosome location map by locus ID

2009-01-15 Thread Pablo G Goicoechea
Sorry list, I guess I sent an html reply. Hi Sake: If you do not find an answer within the list, MapChart will probably do what you want (without the fancy chromosomal bands, though). You can find it at http://www.biometris.wur.nl/uk/Software/MapChart/ Hope this helps Sake escribió: Hi, I

Re: [R] How to create a chromosome location map by locus ID

2009-01-15 Thread Pablo G Goicoechea
__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] noise in time series

2009-01-15 Thread Gerard M. Keogh
Hi, here's a possibility! Your problem can be restated as "given 2 observers giving 2 measures what is their level of agreement" - the classical measure here is the Kappa (see sec 10.5 of Categorical Data Analysis by Alan Agresti (in Ed 1 - Ed 2 should also have it!) and you can also model the si

Re: [R] Summary of Total Object.Size in R Script

2009-01-15 Thread Gundala Viswanath
Sorry for my late reply. Thank you so much Jim. This script of yours is very2 useful. I have used it. - Gundala Viswanath Jakarta - Indonesia On Wed, Jan 14, 2009 at 12:17 AM, jim holtman wrote: > Here is a function I use to see how big the objects in my workspace are: > >> my.ls <- > + funct

[R] Seemingly Unrelated Negative Binomial (SUNB) estimation

2009-01-15 Thread Elisa Lanzi
Dear all, I am trying to estimate a system of equations with a Seemingly Unrelated Regression. However because of the characteristics of the data I'd like to do it with a negative binomial estimation. Would anybody know how to implement a Seemingly Unrelated Negative Binomial (SUNB) estimation in R

Re: [R] remove columns containing all zeros (or other value)

2009-01-15 Thread Jim Lemon
How about: remove.constant.values<-function(x,MARGIN,value2remove) { is.constant.line<-function(x,value2remove) { return(any(x!=value2remove)) } return(unlist(apply(x,MARGIN,is.constant.line,value2remove))) } x[,remove.constant.values(x,2,0)] Jim __

[R] Job as doctorial candidate

2009-01-15 Thread Holger Kömm
Ladies and gentlemen, this email is directed to all German-speaking members of the r-help list. We from the chair of statistics and quantitative methods on the Catholic University of Eichstätt-Ingolstadt, Germany, are searching for a new colleague. You will find the corresponding job offer

[R] regexp problem (was: Re: publication statistics from Web of Science)

2009-01-15 Thread baptiste auguie
Whoops, it seems I could use some help with regular expressions... Consider the following two functions, creating a search string, and retrieving the content from the url, makeURLsearch <- function(key, dates=c(NULL, NULL)){ base.search <- "http://scholar.google.co.uk/scholar

Re: [R] Kaplan-Meier Plot

2009-01-15 Thread John Lande
thank you, it worked properly. On Thu, Jan 15, 2009 at 4:53 AM, Marc Schwartz wrote: > on 01/14/2009 03:32 PM John Lande wrote: > > dear all, > > > > I want to plot a kaplan Meier plot with the following functions, but I > fail > > to produce the plot I want: > > > > library(survival) > > tim <-

[R] How to create a chromosome location map by locus ID

2009-01-15 Thread Sake
Hi, I'm trying to make a chromosomal map in R by using the locus. I have a list of genes and their locus, and I want to visualise that so you can see if there are multiple genes on a specific place on a chromosome. A example of what I more or less want is below: http://www.nabble.com/file/p214742

Re: [R] R package tests

2009-01-15 Thread ml-r-help
Hi Nathan, in addition to what others have already mentioned there is some documentation in the Writing R Extensions Manual: - on the supported structure of packages, indicating where test code might be added http://stat.ethz.ch/R-manual/R-patched/doc/manual/R-exts.html#Package-subdirectories -

Re: [R] publication statistics from Web of Science

2009-01-15 Thread baptiste auguie
For the record, I thought I'd share two findings: First, the web of science website does seem to have some sort of API, as discussed here: http://scientific.thomson.com/support/faq/webservices/ It does not seem like a trivial thing to set up though. Second, because I could not pass the searc

Re: [R] Logical function to turn missing values to 0's

2009-01-15 Thread ONKELINX, Thierry
Use the is.na function to test for NA values. And do read about vectorizing your code. You don't need loops for this problem. Without loops your code will run more than 400 times faster! > n <- 1000 > x <- matrix(data=rep(c(1,2,3,NA), n), ncol=n, nrow=n) > > system.time({ + y <- matrix(data=0

Re: [R] R package tests

2009-01-15 Thread Robin Hankin
I think the OP was asking about test suites that test the software. The R package structure includes a test/ directory which you can use to put tests. For example, in the onion package I check that I have got my signs and multiplication table correctly implemented: stopifnot(Hi*Hj == Hk) sto

[R] Odp: Moving a Data Frame Column

2009-01-15 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 15.01.2009 04:47:39: > > Dear R-Users > if I have a data frame (or zoo data) as follows: > > Run Bike Walk Drive > 1 2 7 5 > 5 2 4 2 > 8 3 2 1 > > How can I re-order it so that it reads: > > Drive Run

Re: [R] R package tests

2009-01-15 Thread Philippe Grosjean
There is a mechanism for testing code in R packages (R CMD check), see the Writing R extensions manual. If you need more flexibility for your tests, you could look at RUnit on CRAN, or svUnit on R-Forge (http://r-forge.r-project.org, on CRAN soon). For the later one, you install it by: instal

[R] [r] How to Solve the Error( error:cannot allocate vector of size 1.1 Gb)

2009-01-15 Thread Kum-Hoe Hwang
Hi, Gurus Thanks to your good helps, I have managed starting the use of a text mining package so called "tm" in R under the OS of Win XP. However, during running the tm package, I got another mine like memory problem. What is a the best way to solve this memory problem among increasing a physica

Re: [R] Interface to open source Reporting tools

2009-01-15 Thread Philippe Grosjean
Dieter Menne wrote: srinivasa raghavan gmail.com> writes: I am interested to generate dashboard and reports based on data from MS Access. These reports need to be posted on a weekly basis to the web. The reporting interface should provide facilities for "what if" scenarios. Is it possible