Re: [R] Error message

2024-03-22 Thread Ivan Krylov via R-help
В Fri, 22 Mar 2024 14:52:05 -0500 Val пишет: > : 8d5a 35f8 1ac5 cc14 a04e be5c 572f a3ad .Z5..N.\W/.. > 0010: 6210 7024 9b58 93c7 34d0 acb7 7a82 3f99 b.p$.X..4...z.?. Thank you! This doesn't look like any structured data to me. In particular, it doesn't look like something wri

Re: [R] Error message

2024-03-22 Thread Val
Here is the first few bytes, xxd -l 128 X1.RData : 8d5a 35f8 1ac5 cc14 a04e be5c 572f a3ad .Z5..N.\W/.. 0010: 6210 7024 9b58 93c7 34d0 acb7 7a82 3f99 b.p$.X..4...z.?. 0020: 66ce 0ebb 2057 ec36 55b4 0ece a036 695a f... W.6U6iZ 0030: 258b 3493 b661 f620 f7fe ada7 158a 1

Re: [R] Error message

2024-03-22 Thread Ivan Krylov via R-help
В Fri, 22 Mar 2024 14:31:17 -0500 Val пишет: > How do I get the first few bytes? What does file.info('X1.RData') say? Do you get any output if you run print(readBin('X1.RData', raw(), 128))? If this is happening on a Linux or macOS machine, the operating system command xxd -l 128 X1.RData wi

Re: [R] Error message

2024-03-22 Thread Val
Yes, X1.RData is large(more than 40M rows) . How do I get the first few bytes? On Fri, Mar 22, 2024 at 2:20 PM Ivan Krylov wrote: > > В Fri, 22 Mar 2024 14:02:09 -0500 > Val пишет: > > > X2.R > > load("X1.RData") > > > > I am getting this error message: > > Error in load("X1.RData", : > > ba

Re: [R] Error message

2024-03-22 Thread Ivan Krylov via R-help
В Fri, 22 Mar 2024 14:02:09 -0500 Val пишет: > X2.R > load("X1.RData") > > I am getting this error message: > Error in load("X1.RData", : > bad restore file magic number (file may be corrupted) .. no data > loaded. This error happens very early when R tries to load the file, right at the fir

Re: [R] Error message when using 'optim' for numerical maximum likelihood

2023-05-14 Thread Rui Barradas
Às 06:28 de 14/05/2023, iguodala edwin via R-help escreveu: Good morning, How can I resolved error message New_X with convergence 1.Thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see

Re: [R] Error message when using 'optim' for numerical maximum likelihood

2023-05-14 Thread iguodala edwin via R-help
Good morning, How can I resolved error message New_X with convergence 1.Thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read t

Re: [R] error message from read.csv in loop

2021-07-10 Thread Migdonio González
Thank you very much for the clarification. I will try to use a more precise language next time. Warm regards Migdonio G. On Sat, Jul 10, 2021 at 11:30 AM Bert Gunter wrote: > "It seems that your problem is that you are using single quotes inside of > the double quotes." > > That is FALSE. From

Re: [R] error message from read.csv in loop

2021-07-10 Thread Duncan Murdoch
On 10/07/2021 12:30 p.m., Bert Gunter wrote: "It seems that your problem is that you are using single quotes inside of the double quotes." That is FALSE. From ?Quotes: "Single and double quotes delimit character constants. They can be used interchangeably but double quotes are preferred (and cha

Re: [R] error message from read.csv in loop

2021-07-10 Thread Bert Gunter
"It seems that your problem is that you are using single quotes inside of the double quotes." That is FALSE. From ?Quotes: "Single and double quotes delimit character constants. They can be used interchangeably but double quotes are preferred (and character constants are printed using double quote

Re: [R] error message from read.csv in loop

2021-07-10 Thread Migdonio González
Hello Kai, Just as you did to store the data inside of rr. Try class(rr[[1]]) or class(rr[[2]]) and so on to explore a bit more. The variable rr is a list that contains dataframes within it. To access the dataframes you must use the syntax rr[[i]] where i is the index of the element of the list (o

Re: [R] error message from read.csv in loop

2021-07-10 Thread Migdonio González
It seems that your problem is that you are using single quotes inside of the double quotes. This is not necessary. Here is the corrected for-loop: for (j in 1:nrow(ora)) { mycol <- ora[j,"fname"] mycsv <- paste0(mycol,".csv") rdcsv <- noquote(paste0("w:/project/_Joe.B/O

Re: [R] error message from read.csv in loop

2021-07-09 Thread Rui Barradas
Hello, 1. When there are systematic errors, use ?try or, better yet, ?tryCatch. Something like the code below will create a list of errors and read in the data if none occurred. The code starts by creating an empty list for tryCatch results. It uses ?file.path instead of noquote/paste0 to assem

Re: [R] error message from read.csv in loop

2021-07-09 Thread Kai Yang via R-help
Hi Migdonio, I did try your code: # Initialize the rr variable as a list. rr <- as.list(rep(NA, nrow(ora))) # Run the for-loop to store all the CSVs in rr. for (j in 1:nrow(ora)) {         mycol  <- ora[j,"fname"]         mycsv  <- paste0(mycol,".csv")         rdcsv  <- noquote(paste0("w:/

Re: [R] error message from read.csv in loop

2021-07-09 Thread Eric Berger
it complained about ASSAY_DEFINITIONS not about RESPONDENTS. Can you try with the ASSAY_DEFINITIONS file? On Fri, Jul 9, 2021 at 9:10 PM Kai Yang via R-help wrote: > Hello List, > I use for loop to read csv difference file into data frame rr. The data > frame rr will be deleted after a comp

Re: [R] Error Message Cannot use `+.gg()` with a single argument. Did you accidentally put + on a new line?

2020-12-19 Thread Eric Berger
As the error message says, move the '+' sign from the start of the second line to the end of the preceding line. On Sat, Dec 19, 2020 at 10:29 PM Rosato, Kyle wrote: > For some simple reason, I am unable to see the mistake: > > ggplot(filter(nlsw88, !(is.na(union))), aes(y = wage, x = union, fi

Re: [R] Error Message With the "MCMCmixfactanal" Function

2020-11-11 Thread Jeff Newmiller
Someone may feel like tackling this anyway, but technically it is off-topic here, as this forum is about the R language rather than specific contributed packages. (http://www.r-project.org/posting-guide.html). Lookup the package DESCRIPTION file on CRAN and if it does not mention a recommended s

Re: [R] Error Message With the "MCMCmixfactanal" Function

2020-11-11 Thread Bert Gunter
Please read and follow the posting guide linked below, especially this: "For questions about functions in standard packages distributed with R (see the FAQ Add-on packages in R ), ask questions on R-help. If the question relates to

Re: [R] Error message when using "revtools" package

2020-11-05 Thread Michael Dewey
Dear John Your .bib file did not make it through the system as only a very limited set of attachments is supported. Try to make a minimal .bib file which triggers the problem by splitting your file in half, testing each half, repeat until you get the smallest file which triggers the error. Ho

Re: [R] Error message when using "revtools" package

2020-11-04 Thread Bert Gunter
Perhaps better suggestion: r-sig-meta-analysis ? Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) [[alternative HTML version deleted]]

Re: [R] Error message from "patternbar_s"

2020-08-18 Thread PIKAL Petr
Hi You probably do not have date in your data. Or date in R sense. What str(df_c_m) tells you about your date. I believe date is factor or character variable, which need to be converted do Date variable by appropriate way - e.g. strptime or as.Date. BTW, "dput" result is useful for exchanging

Re: [R] Error message from "patternbar_s"

2020-08-17 Thread John
Thanks!! PIKAL Petr 於 2020年8月17日 週一 下午8:17寫道: > Hi > > You probably do not have date in your data. Or date in R sense. What > str(df_c_m) tells you about your date. I believe date is factor or > character > variable, which need to be converted do Date variable by appropriate way - > e.g. strptim

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread K Amoatwi
t; metafor::forest(result.md) > >> > >> it should work. > >> > >> Best, > >> Wolfgang > >> > >>> -Original Message- > >>> From: K Amoatwi [mailto:amoatwi...@gmail.com] > >>> Sent: Tuesday, 23 June, 2

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread Michael Dewey
st, Wolfgang -Original Message- From: K Amoatwi [mailto:amoatwi...@gmail.com] Sent: Tuesday, 23 June, 2020 16:37 To: Viechtbauer, Wolfgang (SP) Cc: r-help@r-project.org Subject: Re: [R] Error message in meta-analysis package Metafor-weights ="" Dear Wolfgang, I have posted the r

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread K Amoatwi
al Message- > >From: K Amoatwi [mailto:amoatwi...@gmail.com] > >Sent: Tuesday, 23 June, 2020 16:37 > >To: Viechtbauer, Wolfgang (SP) > >Cc: r-help@r-project.org > >Subject: Re: [R] Error message in meta-analysis package Metafor-weights > ="" > &

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread Viechtbauer, Wolfgang (SP)
ailto:amoatwi...@gmail.com] >Sent: Tuesday, 23 June, 2020 16:37 >To: Viechtbauer, Wolfgang (SP) >Cc: r-help@r-project.org >Subject: Re: [R] Error message in meta-analysis package Metafor-weights ="" > >Dear Wolfgang, >I have posted the requested information you as

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread K Amoatwi
te: > Dear Kobby, > > Please post the output of sessionInfo() and class(result.md). > > Best, > Wolfgang > > >-Original Message- > >From: K Amoatwi [mailto:amoatwi...@gmail.com] > >Sent: Monday, 22 June, 2020 22:30 > >To: Viechtbauer, Wolfgang

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread Viechtbauer, Wolfgang (SP)
Dear Kobby, Please post the output of sessionInfo() and class(result.md). Best, Wolfgang >-Original Message- >From: K Amoatwi [mailto:amoatwi...@gmail.com] >Sent: Monday, 22 June, 2020 22:30 >To: Viechtbauer, Wolfgang (SP) >Cc: r-help@r-project.org >Subject: Re: [R

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-22 Thread K Amoatwi
Hi Wolfgang and All, I am still practising my meta-analysis with the "Metafor" package, I tried to run the code for "Forest plot" and got error message as shown below: forest(result.md) > forest(result.md) Error in UseMethod("forest") : no applicable method for 'forest' applied to an object of cl

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-16 Thread K Amoatwi
Thank you, very much appreciated. On Tue, Jun 16, 2020 at 12:50 PM Viechtbauer, Wolfgang (SP) < wolfgang.viechtba...@maastrichtuniversity.nl> wrote: > Dear Amoatwi, > > This way of using the escalc() function has been deprecated. It might be > added back once there is actually any benefit from ha

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-16 Thread Viechtbauer, Wolfgang (SP)
Dear Amoatwi, This way of using the escalc() function has been deprecated. It might be added back once there is actually any benefit from having this functionality, but for years it just meant that I had to maintain two different ways of doing the exact same thing without any additional benefit

Re: [R] Error message using boot.ci function

2020-03-30 Thread Rui Barradas
Hello, David is right, the response is named 'crp', not 'fastMM'. And there is no need to run the regression twice. Try # function to obtain MSE MSE <- function(data, indices, formula, method) { d <- data[indices, ] # allows boot to select sample fit <- lmrob(formula, data = d, method = m

Re: [R] Error message using boot.ci function

2020-03-30 Thread varin sacha via R-help
Hi David, Yes, you are right but it does not change anything to my problem. According to the error message, what I understand is that there is/are NAs values in "t". Using newdata <- na.omit(Dataset) I create new dataset without missing data, so I don't understand what is going on with these NA

Re: [R] Error message using boot.ci function

2020-03-30 Thread David Winsemius
On 3/30/20 2:45 AM, varin sacha wrote: Many thanks David, But I am not sure the Dataset and newdata are the real problem. I have solved, at least I think so, what you were asking. Here below my new R code but still the same error message. IMHO the problem is with "boot.ci" function... # # #

Re: [R] Error message using boot.ci function

2020-03-30 Thread varin sacha via R-help
Many thanks David, But I am not sure the Dataset and newdata are the real problem. I have solved, at least I think so, what you were asking. Here below my new R code but still the same error message. IMHO the problem is with "boot.ci" function... # # # # # # # # # # # # # # # # # # # ## # # # #

Re: [R] Error message using boot.ci function

2020-03-29 Thread David Winsemius
On 3/28/20 12:25 PM, varin sacha via R-help wrote: Dear R-experts, Here below my "toy" reproducible example showing many warnings and an error message. What I am interested in is the error message. Of course I can access and view the results doing : summary(results$t) to give me an idea of w

Re: [R] Error message when adding drift for Arima model

2019-05-13 Thread Michael Howell
Yes that is a little off topic but I will look into it more. Thank you very much for your help. Michael On Mon, May 13, 2019 at 11:33 AM Rui Barradas wrote: > Hello, > > Sorry for the late reply. > Inline. > > Às 17:54 de 10/05/19, Michael Howell escreveu: > > Rui, > > I'm still new to ARIMA fo

Re: [R] Error message when adding drift for Arima model

2019-05-13 Thread Rui Barradas
Hello, Sorry for the late reply. Inline. Às 17:54 de 10/05/19, Michael Howell escreveu: Rui, I'm still new to ARIMA forecasting but I examined the PACF and saw significant correlation at lag 2. You saw a PACF with a significant correlation at lag 2 but not at lag 1. When this happens, it m

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Rui Barradas
Why not Arima(tsdata, c(0, 0, 1), include.drift = TRUE) ? Why do you say it should be an AR(2) model? Hope this helps, Rui Barradas Às 06:43 de 10/05/19, Rui Barradas escreveu: Hello, This is just a typo, in R logical values ("true) are not character strings. You must pass FALSE (the defa

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Rui Barradas
Hello, This is just a typo, in R logical values ("true) are not character strings. You must pass FALSE (the default, can be omited) or TRUE. fitdata <- Arima(tsdata, c(2, 0, 0), include.drift = TRUE) From the help page ?logical Details TRUE and FALSE are reserved words denoting logical c

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Bert Gunter
In future, always cc the list (unless it's personal,which this isn't). I have done so here. As I am largely ignorant on the subject matter, others will have to help, which is why you should cc the list. Cheers, Bert Gunter "The trouble with having an open mind is that people keep coming along and

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Bert Gunter
Please start by reading and following the posting guide linked at the bottom of this email. In particular: 1) Post in **plain text** on this plain text list so we don't get the mangled html of your post. 2) Tell us what package Arima() is in. Cheers, Bert Gunter On Thu, May 9, 2019 at 2:27 P

Re: [R] error message from sqldf

2018-03-10 Thread José María Mateos
On Sat, Mar 10, 2018 at 09:30:42PM +, Ding, Yuan Chun wrote: > chr10 <- sqldf("select * from manifest where CHR==10") > > UCN3cpg <- sqldf("select * from chr10 where MAPINFO between 5405573 and > 5407594), > overwrite = TRUE") > Error: Table chr10 exists in database, and both overwrite and a

Re: [R] error message for function: lmer (from lme4 package)

2017-11-17 Thread David Winsemius
> snipped > > Hi, Bert, > Sorry about that! David seemed to be able to read the post since he replied. The only reason it appear readable was that you copied me as well as the list. Then HTML was still the basic format although it did npt appear that way to me since my reader could handle it

Re: [R] error message for function: lmer (from lme4 package)

2017-11-16 Thread Fix Ace via R-help
Hi, Bert, Thank you very much for the comments and suggestions! Ace On Wednesday, November 15, 2017 10:44 AM, Bert Gunter wrote: Always cc the list, which I have done here. I am not a (free) private consultant, nor do I have all the answers. Based on what you sent me, which is not wha

Re: [R] error message for function: lmer (from lme4 package)

2017-11-15 Thread Bert Gunter
Always cc the list, which I have done here. I am not a (free) private consultant, nor do I have all the answers. Based on what you sent me, which is not what you have previously posted, you failed to load the lme3 package. See ?library. As for the appropriateness of your modeling, you should do w

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread David Winsemius
> On Nov 14, 2017, at 12:49 PM, Fix Ace wrote: > > Hi, David, > > Thank you very much for getting back to me! Sorry about the messy code > example. I am re-posting here (including the error message): > > > example.3=data.frame(levels=as.numeric(XXX[,c(4)]),replicate=rep(c("0","1","2","3","4",

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread Bert Gunter
Still a complete mess! Post in **plain text**. This should be an option in your email software. Please seek local help if you cannot figure out how to do this. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread Fix Ace via R-help
Hi, David, Thank you very much for getting back to me! Sorry about the messy code example. I am re-posting here (including the error message): > example.3=data.frame(levels=as.numeric(XXX[,c(4)]),replicate=rep(c("0","1","2","3","4","5"),3),conditions=c(rep("11",6),rep("12",6),rep("13",6)))> > exa

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread David Winsemius
> On Nov 14, 2017, at 5:13 AM, Fix Ace via R-help wrote: > > Dear R Community, > My data have 3 conditions and each condition has 6 replicates. I am trying to > fit my data for a linear mixed model using the lmer function from lme4 > package to find the random effects of the replicates; Bette

Re: [R] Error Message when executing wordcloud(bd_clean)

2016-10-31 Thread Jeff Newmiller
A) Please post in plain text so your code doesn't get mangled by HTML. B) Please provide a reproducible example. [1] [2] C) RStudio is probably not the problem, but if it is then this is the wrong place to ask about that (see the RStudio website for help with that software). Simply try your cod

Re: [R] Error message in SIS package

2016-10-19 Thread Maity, Arnab K
sity 3143 TAMU, Room 401A College Station, TX 77843 aku...@stat.tamu.edu +1 779 777 3428 From: David Winsemius Sent: Wednesday, October 19, 2016 3:06 PM To: Maity, Arnab K Cc: r-help@r-project.org Subject: Re: [R] Error message in SIS package > On Oct 17,

Re: [R] Error message in SIS package

2016-10-19 Thread David Winsemius
> On Oct 17, 2016, at 1:54 PM, Maity, Arnab K wrote: > > I try to run the following code: > > sis.fit <- SIS(y = Surv(time = y[, 1], event = y[, 2]), x = x, family = > "cox", penalty = "lasso", tune = "cv", > nfolds = 10, type.measure = "deviance", nsis = min(dim(x)), > iter =

Re: [R] Error message in SIS package

2016-10-17 Thread Jeff Newmiller
I doubt I will know how to help you in any case, but I can see that you are shackling yourself to a very small (possibly empty) set of helpers by not making your example reproducible. You will also slow any helpers down once you change that if you post again in HTML format... set your email pr

Re: [R] error message for every parenthesis

2016-02-16 Thread Tara Kerin
Thank you both for your quick reply! I did install 3.2.3, it appears that was just a typo in my earlier message. Yes! deleting the workspace and history seems to correct the problem. I will also not continue the practice of saving my workspace. I have also now downloaded R studio. Thank you for t

Re: [R] error message for every parenthesis

2016-02-16 Thread Michael Dewey
Dear Tara 1 - why did you install 3.2.1 when 3.2.3 is the latest version 2 - what happens if you delete .RData and .Rapp.history from your workspace? 3 - you do have a function try as it is part of R On 16/02/2016 02:49, Tara Kerin wrote: Hi, I seem to be having the same problem Garrett (below

Re: [R] Error message when running gam (mgcv). object not found

2015-12-11 Thread Simon Wood
Hi Diego, I suggest you send me an example offline, along with the result of sessionInfo(), best, Simon On 11/12/15 09:25, Diego Pavon wrote: Dear all I am trying to fit gam to my data but it keeps giving me errors. It does not find the covariate ArrivalTime even though it is clearly define

Re: [R] Error message from allEffects(model) / effect(model)" ‘range’ not meaningful for factors"

2015-08-19 Thread Michael Dewey
You rm is of class summary.lm Is that what allEffects is expecting? On 19/08/2015 01:49, Robert Zimbardo wrote: Hi I cannot figure out why the effects package throws me error messages with the following simple code: rm(list=ls(all=TRUE)); set.seed(1); library(effects) # set up data x <- facto

Re: [R] Error message from allEffects(model) / effect(model)" ‘range’ not meaningful for factors"

2015-08-19 Thread John Fox
Hi, > m <- lm(y~x) # no problem > allEffects(m)# also no problem model: y ~ x x effect x abc 3.322448 3.830997 4.969154 > effect("x", m) # ditto x effect x abc 3.322448 3.830997 4.969154 > Effect("x", m) # ditto x effect x a

Re: [R] error message in package "FD", function dbFD ()

2015-07-15 Thread William Dunlap
Try doing rownames(x) <- x["Species"] before running dbFD. The function is probably using the row and column names of its inputs as species names, not a certain row or column of the data. Bill Dunlap TIBCO Software wdunlap tibco.com On Wed, Jul 15, 2015 at 6:47 AM, lauraRIG wrote: > Dear R

Re: [R] error message in package "FD", function dbFD ()

2015-07-15 Thread Jeff Newmiller
Thank you for making an effort, but your example is still not reproducible. Study something like [1] for more clarity on how to communicate online. Problems that you encounter in getting your data into R are different than problems with the functions in base R or contributed packages, and a rep

Re: [R] ERROR Message

2015-05-22 Thread Jim Lemon
Hi Ivone, This does look a bit like homework as someone else sent a help request with a strikingly similar problem. However, I would first do something like this: is.array(datalist[[1]]) as this is what the error message is saying. Jim On Sat, May 23, 2015 at 2:57 AM, Ivone Figueiredo wrote:

Re: [R] error message

2015-05-22 Thread John Kane
I think we need a couple of things. First we need your post in text not hmtl. R-help removes the html as a security feature and it turns your post into a complete mess. See below. Second we probably need more information and some data. Please read one or both of these http://stackoverflow.co

Re: [R] error message: ReadItem: unknown type 64, perhaps written by later version of R

2015-03-06 Thread Franckx Laurent
> -Original Message- > From: Prof Brian Ripley [mailto:rip...@stats.ox.ac.uk] > Sent: vrijdag 6 maart 2015 10:23 > To: Franckx Laurent; r-help@r-project.org > Subject: Re: [R] error message: ReadItem: unknown type 64, perhaps written > by later version of R >

Re: [R] error message: ReadItem: unknown type 64, perhaps written by later version of R

2015-03-06 Thread Prof Brian Ripley
On 05/03/2015 20:34, Franckx Laurent wrote: Dear all I get the following error message when I try to load one specific RData object in R: Error: ReadItem: unknown type 64, perhaps written by later version of R The error message is odd because (a) this RData object was created just

Re: [R] Error message when fitting a binomial response model using glm

2014-05-24 Thread David Winsemius
On May 23, 2014, at 2:04 PM, Adams, Jean wrote: > Roland, > > I did a google search for > R Error: inner loop 2; cannot correct step size > and found an old R-help message that suggests the glm() algorithm cannot > converge. > https://stat.ethz.ch/pipermail/r-help/2009-December/223142.ht

Re: [R] Error message when fitting a binomial response model using glm

2014-05-23 Thread Adams, Jean
Roland, I did a google search for R Error: inner loop 2; cannot correct step size and found an old R-help message that suggests the glm() algorithm cannot converge. https://stat.ethz.ch/pipermail/r-help/2009-December/223142.html I get the same error message as you when I fit glm(cb

Re: [R] Error message in R

2014-04-15 Thread Uwe Ligges
On 15.04.2014 14:03, mark.l...@hauck-aufhaeuser.de wrote: Hello, we get at a users individual following error: java.lang.OutOfMemoryError: unable to create new native thread Can you please tell me how I can fix this? You are using the xlsx package? Increase the java heap size, I find a sol

Re: [R] Error Message using xyplot of lattice

2014-04-06 Thread arun
HI, Check the output of: datM <- melt(DataSeries,id.var="Date") head(datM,2)# 3 columns # Date variable value #1 2001-01-01 A 4 #2 2001-01-02 A 1 datM1 <- setNames(datM,LETTERS[c(24,26,25)]) library(lattice) xyplot(Y~as.numeric(X),data=datM1,groups=Z,type="l") A.K. hi, thank you for the help.

Re: [R] Error Message using xyplot of lattice

2014-04-05 Thread arun
Hi, You didn't provide a reproducible example.  If your dataset is something like this: set.seed(495) DataSeries <- data.frame(Date=seq(as.Date("2001-01-01"),by="1 day", length.out=20), A= sample(10,20,replace=TRUE), B= rnorm(20)) ###Using your codes: Matrix_New1 <- cbind(as.list(DataSeries[,

Re: [R] Error message

2014-03-18 Thread Jeff Newmiller
We cannot help you. You claim to have set the working directory but cannot find the file you expect to be there. Either you have failed to set the directory correctly, or the file is not where you think it is... and since we do not have access to your computer we have no way to tell you which ca

Re: [R] Error Message when running Linear regression

2014-03-03 Thread sportsguy
Never mind, the excel csv export had commas in the formatting, which caused " " around the values, and R didn't find any regression values. . . . thanks for reading sportsguy -- View this message in context: http://r.789695.n4.nabble.com/Error-Message-when-running-Linear-regression-tp468616

Re: [R] error message "system is computationally singular" under mlogit

2014-01-29 Thread Franckx Laurent
ne of them equal to zero. Cheers Laurent -Original Message- From: Bert Gunter [mailto:gunter.ber...@gene.com] Sent: woensdag 29 januari 2014 16:43 To: Franckx Laurent Cc: r-help@r-project.org Subject: Re: [R] error message "system is computationally singular" under mlogit Advic

Re: [R] error message "system is computationally singular" under mlogit

2014-01-29 Thread Bert Gunter
Advice: I would guess that you are overfitting. Simplify your model. Drop some of the variables.You probably have (near) linear dependencies in your design matrix. -- Cheers, Bert Bert Gunter Genentech Nonclinical Biostatistics (650) 467-7374 "Data is not information. Information is not knowled

Re: [R] Error message glmer using R: “ 'what' must be a character string or a function”

2013-11-06 Thread Ben Bolker
William Dunlap tibco.com> writes: > > You can reproduce the problem by having a data.frame (or anything > > else) in your environment: > > I left out "called 'new'" in the > > above statement. The example is correct. > Bill Dunlap > Spotfire, TIBCO Software > wdunlap tibco.com > > > -Or

Re: [R] Error message glmer using R: “ 'what' must be a character string or a function”

2013-11-06 Thread William Dunlap
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On > Behalf > Of William Dunlap > Sent: Wednesday, November 06, 2013 8:04 AM > To: EmmaB; r-help@r-project.org > Subject: Re: [R] Error message glmer using R: “ 'what' must be a character > strin

Re: [R] Error message glmer using R: “ 'what' must be a character string or a function”

2013-11-06 Thread William Dunlap
of the package (use maintainer("lme4") for the address) about the problem. Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On > Behalf > Of EmmaB > Sent: Tue

Re: [R] Error message glmer using R: “ 'what' must be a character string or a function”

2013-11-05 Thread EmmaB
> str(new) 'data.frame': 1214 obs. of 4 variables: $ ï..VAR1 : logi NA NA NA NA NA NA ... $ random : int 1 1 1 1 1 1 1 1 1 1 ... $ clustno : int 1 1 1 1 1 1 1 1 1 1 ... $ validatedRS6: int 0 0 0 0 0 0 0 0 0 0 ... -- View this message in context: http://r.789695.n4.nabble

Re: [R] Error message glmer using R: “ 'what' must be a character string or a function”

2013-11-05 Thread David Winsemius
On Nov 5, 2013, at 3:36 PM, EmmaB wrote: > I am running a multi-level model. I use the following commands with > validatedRS6 as the outcome, random as the predictor and clustno as the > random effects variable. > > new<-as.data.frame(read.delim("BABEX.dat", header=TRUE)) > install.packages("lme

Re: [R] Error message in SPACECAP package

2013-11-05 Thread PIKAL Petr
Hi Although I do not know about SPACECAP here are few hints. Usually attachment does not go through, use dput instead. Copy output of dput(head(yourdata)) to the mail. str(yourdata) Gives you (and us if you show the output) some info about your data mode. My opinion is that some column is no

Re: [R] Error message after following Appendix A R-intro

2013-10-16 Thread Pascal Oettli
Hello, The command you have to use is "lm", not "1m". Regards, Pascal On 17 October 2013 08:03, timscharlton wrote: > I am new to R and tried to go through the commands shown at App. A of > "R-intro" (p.78). > > I get the following error message. > >> fm<-1m(y~x,data=dummy) > Error: unexpected

Re: [R] Error message after following Appendix A R-intro

2013-10-16 Thread David Winsemius
On Oct 16, 2013, at 4:03 PM, timscharlton wrote: > I am new to R and tried to go through the commands shown at App. A of > "R-intro" (p.78). > > I get the following error message. > >> fm<-1m(y~x,data=dummy) > Error: unexpected symbol in "fm<-1m" In some screen fonts it's difficult to tell t

Re: [R] Error message after following Appendix A R-intro

2013-10-16 Thread Ben Tupper
Hi, On Oct 16, 2013, at 7:03 PM, timscharlton wrote: > I am new to R and tried to go through the commands shown at App. A of > "R-intro" (p.78). > > I get the following error message. > >> fm<-1m(y~x,data=dummy) > Error: unexpected symbol in "fm<-1m" I think the example shows the function

Re: [R] error message in gev

2013-07-17 Thread Roslina Zakaria
Hi Rui,   Yes, it works beatifully this time.   Thank you so much for your help. From: Rui Barradas Cc: R help forum Sent: Wednesday, July 17, 2013 11:28 PM Subject: Re: [R] error message in gev Hello, And what if you try it without a block value

Re: [R] error message in gev

2013-07-17 Thread Rui Barradas
oslina Zakaria *Cc:* 'r-help' *Sent:* Wednesday, July 17, 2013 8:49 PM *Subject:* Re: [R] error message in gev Hello, It's better if you Cc the list, the odds of getting more and better answers are greater. Have you tried with different block values? Rui Barradas Em 17-07-201

Re: [R] error message in gev

2013-07-17 Thread Roslina Zakaria
at, gev, block = 10) Error in optim(theta, negloglik, hessian = TRUE, ..., tmp = data) : non-finite finite-difference value [2] From: Rui Barradas Cc: 'r-help' Sent: Wednesday, July 17, 2013 8:49 PM Subject: Re: [R] error message in gev Hello, I

Re: [R] error message in gev

2013-07-17 Thread Rui Barradas
ve succeeded 7: In FUN(X[[7L]], ...) : optimization may not have succeeded Thank you. *From:* Rui Barradas *To:* Roslina Zakaria *Cc:* "r-help@r-project.org" *Sent:* Wednesday, July 17, 2013 5:51 PM *Subject:* Re: [R] error message in gev Hello, You should say which package is gev()

Re: [R] error message in gev

2013-07-17 Thread Rui Barradas
Hello, You should say which package is gev() coming from. I believe it's from evir, and what follows assumes that. The problem is that 'dat' is a data.frame, a special type of list. It is a list of vectors and gev is expecting just one vector. You could try instead, to fit generalized extreme

Re: [R] Error message

2013-07-10 Thread Prof Brian Ripley
On 10/07/2013 15:04, Emanuele Belli wrote: Hello, I'm an italian student, I've got some problems using R: After calculating a dbinom() function, my "help.start()" started not to work. If I type on the console "Help.start", it says me "starting httpd help server ...Errore in stats::runif(10) :

Re: [R] error message solution: cannot allocate vector of size 200Mb

2013-05-23 Thread Gyanendra Pokharel
Try in R 64 bit. Thanks Gyanendra Pokharel University of Guelph Guelph, ON On Thu, May 23, 2013 at 10:53 AM, Ray Cheung wrote: > Dear All, > > I wrote a program using R 2.15.2 but this error message "cannot allocate > vector of size 200Mb" appeared. I want to ask in general how to handle this

Re: [R] Error message

2013-04-30 Thread Bert Gunter
Another alternative might be to post the the r-sig-mixed-models list gls() is part of nlme. -- Bert On Tue, Apr 30, 2013 at 11:12 AM, Bert Gunter wrote: > Actually, Jeff, it may not be. > > The OP has likely overfit -- as a guess, Depth is essentially > continuous and as.factor() produces too m

Re: [R] Error message

2013-04-30 Thread Bert Gunter
Actually, Jeff, it may not be. The OP has likely overfit -- as a guess, Depth is essentially continuous and as.factor() produces too many levels. I would recommend that the OP find a local statistical consultant to help him, as he seems out of his depth, statistically. Failing that, he should pro

Re: [R] Error message

2013-04-30 Thread Jeff Newmiller
That is unlikely in the absence of a reproducible example [1]. [1] http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example --- Jeff NewmillerThe . . Go

Re: [R] Error message after R-3.0.0 upgrade installation

2013-04-30 Thread Prof Brian Ripley
On 30/04/2013 07:44, Anupam Tyagi wrote: R-3.0.0 prints an error message at startup. I uninstalled a previous version and installed this on Windows 8. Uninstall of previous version deleted all previously installed packages and I forgot to keep a list of them. How do I correct this error? " Error

Re: [R] error message sending question to the list

2013-04-06 Thread Jeff Newmiller
There is much wisdom in the Posting Guide mentioned in the footer of every email on this list. One pearl is the request to send your email in text format, not HTML. How you do this is specific to your email program, so we cannot help you, but Google is your friend. As to your message, requests

Re: [R] error message

2013-04-04 Thread Sarah Goslee
Hi, > I have the same question as Harriet to sent it almost a year ago but could > not find a response.I want to run exploratory factor analysis and after > turning my data into a matrix I want to look at the stats. However I get this > error message "One of your variables is a constant. Consta

Re: [R] Error message in dredge function (MuMIn package) used with binary GLM

2013-04-01 Thread CatCowie
Hi Kamil, (I have replied to the forum but my posts as replies never seem to get accepted, so here is the text in an email also. Apologies if it comes through twice.) Thanks so much for the prompt reply. You've solved it! Actually I had the latest version of the package, but an older version of R

Re: [R] Error message in dredge function (MuMIn package) used with binary GLM

2013-04-01 Thread Kamil Bartoń
Hi Cat, are you using some very old version of MuMIn? That would explain the missing 'QAICc'. As for the error message about 'logLik', it usually occurs when there are some misspelled arguments (that go into "..." and are passed to the rank function, 'AICc' in your case). Check if there is some ar

Re: [R] Error message in dredge function (MuMIn package) with binary GLM

2013-03-31 Thread Cat Cowie
Hi all, My replies within the forum aren't getting approved, though my emails always go through, so here is my reply to a question I previously posted (all questions and answers shown). Thanks, Cat I'm having trouble with the model generating 'dredge' function in the MuMIn 'Multi-model Inference

Re: [R] Error message in dredge function (MuMIn package) used with binary GLM

2013-03-29 Thread Kamil Barton
'rank' should be "QAICc". AICc does not have argument 'chat', hence the error. kamil CatCowie wrote > Hi all, > > I'm having trouble with the model generating 'dredge' function in the > MuMIn > 'Multi-model Inference' package. > > Here's the script: > > globalmodel<- glm(TB~lat+protocol+tes

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