Re: [R] MEMORY limit in R

2006-03-13 Thread Liaw, Andy
heatmap() will do hierarchical clustering with hclust(), and to do that it needs to compute and store the lower triangular part of the distance matrix, which has 12626 * 12625 / 2 elements, each elements taking up 8 bytes of storage. That works out to about 608MB (and is about the size that R fail

[R] MEMORY limit in R

2006-03-13 Thread mark salsburg
I sent this to Bioconductor, but I think it is more of an R listserv question, because of memory allocation trouble I am having trouble getting the function heatmap() to work on the following gene expression > dim(SAMPLES_log) [1] 1262620 sample1 sample2...sample