On 27 January 2014 at 16:15, Kevin Ushey wrote:
| The error says that it can't find the boost header file
| 'boost/interprocess/mapped_region.hpp'. Previously, when the article
| was written, this part of boost was packaged as part of bigmemory.
| Now, bigmemory links to BH
| (http://cran.r-projec
Taigo,
On 27 January 2014 at 17:58, Tiago Fragoso wrote:
| I'm trying to use Rcpp with bigmemory, and I'm using the exact same example
| from http://gallery.rcpp.org/articles/using-bigmemory-with-rcpp/ , but I'm
| encountering the following error:
|
| > sourceCpp("example.cpp")
| In file includ
The error says that it can't find the boost header file
'boost/interprocess/mapped_region.hpp'. Previously, when the article
was written, this part of boost was packaged as part of bigmemory.
Now, bigmemory links to BH
(http://cran.r-project.org/web/packages/BH/index.html), a CRAN package
assembled
My only idea, based on the snip below, is that maybe boost headers are not
installed, or installed to a directory other than where bigmemory knows to
look.
In recent versions Bigmemory uses headers via the BH package, which I guess
should be installed via dependencies. Providing your sessionInfo()
Hi all,
I'm trying to use Rcpp with bigmemory, and I'm using the exact same example
from http://gallery.rcpp.org/articles/using-bigmemory-with-rcpp/ , but I'm
encountering the following error:
> sourceCpp("example.cpp")
In file included from
/home/tiago/R/x86_64-pc-linux-gnu-library/3.0/bigmemor
Or -- in all our spare time! -- we should really consider doing the right
thing and Rcpp-ifying the bigmemory packages. It's probably too late for a
GSOC project at this point. Mike and I will talk about it. If we think we
could manage it over 2-3 intense days, maybe it will happen this summer.
Alex,
Glad that you sorted all of this out! Wanted to also point out that there
is a mechanism for bigmemory to have it's headers automatically included in
RcppExports.cpp and perhaps this is something Michael can pursue so
everything works automatically in the future.
In short, if bigmemory defi
All right! I think I have it figured out, at least for the toy
functions/package.
What wasn't compiling wasn't my functions, it was RcppExports.cpp.
sourceCpp (and hence also the knit example) have been working for me all
along. The only issue (apparently) was that RcppExports.cpp was not
includ
On 11 April 2013 at 16:14, Alex Ustian wrote:
| Sorry to be dense, but you mean to copy and paste the source into an Rmd file
| and knit it? If yes, then I did just that and it did work.
Good.
Now try to find the differences to your code, which as I understand your
post, does not compile. As
Dirk,
Sorry to be dense, but you mean to copy and paste the source into an Rmd
file and knit it? If yes, then I did just that and it did work.
Thanks again,
Alex
On Thu, Apr 11, 2013 at 3:35 PM, Dirk Eddelbuettel wrote:
>
> Alex,
>
> Thanks to Mike, we do have one public, posted, working exa
Alex,
Thanks to Mike, we do have one public, posted, working example of Rcpp and
bigmemory in the Rcpp Gallery:
http://gallery.rcpp.org/articles/using-bigmemory-with-rcpp/
So before we go any further with this, can you please confirm that you manage
to re-build that example (once you grab t
Hello again,
Thank you for looking over my issue and sorry for not giving reproducible
code. I guess assumed that I was doing something obviously wrong but just
didn't see it.
I did add an entry for bigmemory (and Rcpp) in the DESCRIPTION file for
both the Depends and LinkingTo fields.
Here is
Alex,
Did you add an entry for bigmemory in the Depends field of the package
DESCRIPTION file? That would certainly explain the errors you are seeing.
J.J.
On Wed, Apr 10, 2013 at 12:50 PM, Alex Ustian wrote:
> Sorry for this double post, I am now correctly subscribed to the list!
>
> Hello,
>
Alex,
On 10 April 2013 at 15:50, Alex Ustian wrote:
| Sorry for this double post, I am now correctly subscribed to the list!
No double post. If you're not subscribed, it just goes to some electronic bin...
| I'm having an issue building a package (named bigExplore) in RStudio which
uses
| both
Sorry for this double post, I am now correctly subscribed to the list!
Hello,
I'm having an issue building a package (named bigExplore) in RStudio which
uses both Rcpp and the MatrixAccessor from bigmemory. All of my functions
seem to work fine when I was interactively developing them via source
Yes, I did it. Thanks.
Aileen Lin
View my profile: au.linkedin.com/in/aileen2
On 2 Apr 2013 21:03, "JJ Allaire" wrote:
> Hi Aileen,
>
> You should also add bigmemory to the the Depends line of the DESCRIPTION
> file. See:
> http://cran.r-project.org/doc/manuals/R-exts.html#Linking-to-native-rou
Hi Aileen,
You should also add bigmemory to the the Depends line of the DESCRIPTION
file. See:
http://cran.r-project.org/doc/manuals/R-exts.html#Linking-to-native-routines-in-other-packages
J.J.
On Tue, Apr 2, 2013 at 2:49 AM, Aileen Lin wrote:
> Problem solved. Need to add bigmemory after ' l
Problem solved. Need to add bigmemory after ' linking:' in description
file. Thanks.
Aileen Lin
View my profile: au.linkedin.com/in/aileen2
___
Rcpp-devel mailing list
Rcpp-devel@lists.r-forge.r-project.org
https://lists.r-forge.r-project.org/cgi-bin/ma
Hi there,
I tried to build a package where I used rcpp and bigmemory.
My .cpp file starts with:
// [[Rcpp::depends(bigmemory)]]
#include
#include
using namespace Rcpp;
~~~
However, there is an error message:
devtools::document()Updating cafs documentation
19 matches
Mail list logo
