[sage-devel] doc testing

2013-08-01 Thread davidp
I have a file called hyperplane_arrangement.py in my home directory, and when I run sage -t hyperplane_arrangement.py from my home directory, all tests pass. The same file appears in the directory SAGEHOME/devel/sage-test/sage/geometry. If I cd into that directory and run sage -t hyperplane

Re: [sage-devel] need help making a patch

2013-08-01 Thread davidp
Thanks! That works. I have now posted the correct patch to trac. On Thursday, August 1, 2013 2:13:47 PM UTC-7, kcrisman wrote: > > > > On Thursday, August 1, 2013 4:55:07 PM UTC-4, William wrote: >> >> On Thu, Aug 1, 2013 at 1:40 PM, davidp wrote: >> > I am t

[sage-devel] need help making a patch

2013-08-01 Thread davidp
I am trying to post a patch to trac. I have modified one file (sage/geometry/all.py) and added a new file (sage/geometry/hyperplane_arrangement.py). I have followed the directions at http://sagemath.org/doc/developer/walk_through.html#creating-a-sandbox carefully. When I get to the part where

[sage-devel] hyperplane arrangements package

2013-07-30 Thread davidp
ments/arr.htm<http://math.mit.edu/~rstan/arrangements/arr.html> l). Anyone interested in giving it a test run without making a clone, etc., could download the file http://www.reed.edu/~davidp/hyperplane_arrangement.py then, at the command line, run sage: %runfile path-to-download/hyperplane_arr

[sage-devel] Re: importing

2013-07-22 Thread davidp
On Monday, July 22, 2013 6:58:11 AM UTC-7, Volker Braun wrote: > > On Sunday, July 21, 2013 8:35:24 PM UTC-4, davidp wrote: > > At the moment, I just have Hyperplane as a class deriving from > AffineSpace (my version of AffineSpace, that is, which I will change, as > &

[sage-devel] Re: importing

2013-07-21 Thread davidp
g: in the next few days I will post a substantial change to that posting. To get an idea, though, you might download hyperplane.sage, posted there. > On Sunday, July 21, 2013 5:54:25 PM UTC-4, davidp wrote: >> >> I have created three classes: AffineSpace, Hyperplane (inheriting

[sage-devel] Re: importing

2013-07-21 Thread davidp
Figured out my problem. I was defining a method for my HyperplaneArrangement class but forgot to include 'self' as an argument. Duh. Dave On Sunday, July 21, 2013 12:58:24 PM UTC-7, davidp wrote: > > I am working on a Sage package for hyperplane arrangeme

[sage-devel] Re: importing

2013-07-21 Thread davidp
yperplane arrangements, though. Do you have > a particular data structure in mind or is your plan to just keep a > collection of hyperplanes? > > > > On Sunday, July 21, 2013 3:58:24 PM UTC-4, davidp wrote: >> >> I am working on a Sage package for hyperplane arrangements.

[sage-devel] importing

2013-07-21 Thread davidp
I am working on a Sage package for hyperplane arrangements. In my file hyperplane_arrangement.py, I would like to use the function 'center' from sage/geometry/polyhedron/basepy. (It finds the center of a polyhedron.) I have tried to import it with import from sage.geometry.polyhedron.base i

[sage-devel] PyCox: Computing with (finite) Coxeter groups and Iwahori-Hecke algebras

2012-01-27 Thread davidp
I just noticed this post to the arXiv. Is Meinholf Geck in touch with Sage? --Dave Title: PyCox: Computing with (finite) Coxeter groups and Iwahori-Hecke algebras Authors: Meinolf Geck Categories: math.RT Comments: 31 pages MSC-class: 20C40, 20C08 \\ We introduce the computer algebra package {

[sage-devel] problem installing 4ti2 spkg

2011-09-11 Thread davidp
The command 'sage -i 4ti2' gives "/usr/local/sage-4.7.1/local/bin/sage-spkg: file 4ti2 does not exist Attempting to download it. Searching for latest version of 4ti2 Found package 4ti2-20061025 ..." and subsequently crashes (never having installed 4ti2). The version of 4ti2 listed at http://sage

[sage-devel] small problem with polyhedra.py

2011-09-10 Thread davidp
Lines 1483 and 1484 in polyhedra.py are projection.render_vertices_3d(width=3, color='green', **kwds) + \ projection.render_wireframe_3d(width=3, color='green', **kwds) + \ Setting the color and width here prevents the user from doing this at the command line (see example below).

[sage-devel] Re: How does one include a directory as part of a patch?

2011-08-14 Thread davidp
unday, August 14, 2011 9:49:53 AM UTC-7, davidp wrote: > > > Thanks for pointing out the media directory. > > > Trying to add the directory did not work for me (even after re-trying > > with the full path name): > > > Adding each individual file separately worked, tho

[sage-devel] Re: How does one include a directory as part of a patch?

2011-08-14 Thread davidp
doc/en/thematic_tutorials/media/sandpile/random.png A doc/en/thematic_tutorials/sandpile.rst *** Thanks! On Aug 13, 2:18 pm, John H Palmieri wrote: > On Saturday, August 13, 2011 1:11:46 PM UTC-7, davidp wrote: > > > I just attached a patch file

[sage-devel] Re: How does one include a directory as part of a patch?

2011-08-14 Thread davidp
doc/en/thematic_tutorials/media/sandpile/random.png A doc/en/thematic_tutorials/sandpile.rst *** Thanks! On Aug 13, 2:18 pm, John H Palmieri wrote: > On Saturday, August 13, 2011 1:11:46 PM UTC-7, davidp wrote: > > > I just attached a patch file

[sage-devel] How does one include a directory as part of a patch?

2011-08-13 Thread davidp
I just attached a patch file for trac 11682 in the trac system. The patch was intended to modify the /doc/en/thematic_tutorials directory by: (1) addng the file 'sandpile.rst', (2) modifying the file 'index.rst', and (3) adding a directory 'sandpile' holding png image files for sandpile.rst. I ju

[sage-devel] Re: thematic tutorials

2011-08-12 Thread davidp
I have communicated specific suggestions to the webmaster. I guess that's the appropriate way of dealing with this. On Aug 12, 11:36 am, davidp wrote: > A "ticket", that is (not "trac"). > > On Aug 12, 11:35 am, davidp wrote: > > > > > > &g

[sage-devel] Re: thematic tutorials

2011-08-12 Thread davidp
A "ticket", that is (not "trac"). On Aug 12, 11:35 am, davidp wrote: > I think it should be easier to find the Thematic Tutorials (http:// > sagemath.org/doc/thematic_tutorials/).  I only learned about these > tutorials by accident using Google. > > In fact,

[sage-devel] thematic tutorials

2011-08-12 Thread davidp
I think it should be easier to find the Thematic Tutorials (http:// sagemath.org/doc/thematic_tutorials/). I only learned about these tutorials by accident using Google. In fact, now that I look more closely at the Documentation page, http://sagemath.org/help.html#SageStandardDoc, I see there is

[sage-devel] Re: Joint Math Meetings Sage talks

2010-11-29 Thread davidp
I will give at least a small demo of my Sage package for the abelian sandpile model in the session on "Laplacian growth": http://www.ams.org/meetings/national/jmm/2125_program_mipgroab.html#title --Dave On Nov 29, 5:53 pm, kcrisman wrote: > (Posted primarily to sage-edu, cc:ed to sage-devel): >

[sage-devel] Re: problem installing 4ti2 Fedora 12 64bit

2010-02-11 Thread davidp
Excellent. This worked, both on my laptop and on my desktop. Thank you. Dave > > Try rebuilding mpir, then try installing 4ti2.p0 again. > >    sage -f mpir-1.2.2.p0 > > William > > -- > William Stein > Associate Professor of Mathematics > University of Washingtonhttp://wstein.org -- To post

[sage-devel] problem installing 4ti2 Fedora 12 64bit

2010-02-10 Thread davidp
-zbasis_main.o 4ti2gmp-main.o lib4ti2gmp.la -L/usr/ local/sage-4.3.2/local/lib -R/usr/local/sage-4.3.2/local/lib -lglpk libtool: link: warning: library `/usr/local/sage-4.3.2/local/lib/ libgmpxx.la' was moved. libtool: link: cannot find the library `/home/davidp/downloads/ sage-4.3.2/local/lib/libg

[sage-devel] Re: line_graph does not handle loops correctly

2010-01-03 Thread davidp
But then there is the problem of needing distinct names for the vertices of the line graph. Thus, line_graph doesn't handle multiple edges correctly either. Dave -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+u

[sage-devel] Re: line_graph does not handle loops correctly

2010-01-03 Thread davidp
Solution?: The beginning of the code for line_graph: if self._directed: G=DiGraph() G.add_vertices(self.edges(labels=labels)) for v in self: # Connect appropriate incident edges of the vertex v G.add_edges([(e,f) for e in

[sage-devel] line_graph does not handle loops correctly

2010-01-03 Thread davidp
The line graph of a graph consisting of a single loop should again be a single loop. sage: g = DiGraph(matrix([[1]]),format='adjacency_matrix') sage: g.loops() [(0, 0, None)] sage: lg = g.line_graph() sage: lg.num_edges() # PROBLEM: there should be one edge 0 My motivation: The

[sage-devel] Re: Request for test of installing R packages

2009-12-14 Thread davidp
oaded_packages’ Updating HTML index of packages in '.Library' Warning messages: 1: In install.packages("aaMI") : installation of package 'aaMI' had non-zero exit status 2: In file.create(f.tg) : cannot create file '/home/davidp/download/sage-4.2/local/lib

[sage-devel] Re: Sage sandpiles package

2009-07-20 Thread davidp
Marshall and David: thanks very much for these suggestions. Dave On Jul 20, 4:59 am, David Joyner wrote: > On Sun, Jul 19, 2009 at 3:33 PM, davidp wrote: > > > I have been working on a Sage package for doing computations involving > > the > > Abelian Sandpile Model.  In

[sage-devel] Sage sandpiles package

2009-07-19 Thread davidp
the ability to interact with Sage. For a glance at what has been going on, I would recommend: www.reed.edu/~davidp/sand especially www.reed.edu/~davidp/sand/sage/html/sage_sandpiles.html and www.reed.edu/~davidp/sand/program/program.html It would be great to get feedback from Sage users

[sage-devel] Re: SimplicialComplex, missing facets method?

2009-05-27 Thread davidp
dden, so I thought you might want to know about this. It is great to have simplicial complexes in Sage! Thanks, Dave On May 26, 4:25 pm, John H Palmieri wrote: > On May 26, 3:19 pm, davidp wrote: > > > > > Should there be a facets method?  Should self.facets be self._facets? >

[sage-devel] SimplicialComplex, missing facets method?

2009-05-26 Thread davidp
TypeError Traceback (most recent call last) /home/davidp/.sage/temp/poly/15731/ _home_davidp_math_sandpile_sage_sage_sandpile1_4_sandpile_sage_250.py in () TypeError: 'list' object is not callable sage: s.facets [(

[sage-devel] Re: Fwd: Open Source Bridge Proposal?

2009-04-06 Thread davidp
I would be happy to give any Sage developer from out of town a place to stay during the event. I am not a Sage developer, so I don't feel qualified to give a presentation. However, if you can't find anyone, perhaps I could be coached during Sage Days 15. Dave On Apr 5, 11:53 am, William Stein

[sage-devel] Re: bug in show method for DiGraphs

2009-03-20 Thread davidp
> > I haven't seen a definition of the laplacian matrix for looped digraphs, > but sure, okay, I assume this is standard, then?  I don't think the > laplacian_matrix function calculates this quantity for digraphs.  This > might be a bug, then. It is standard to take the Laplacian to be D - A wher

[sage-devel] Re: bug in show method for DiGraphs

2009-03-20 Thread davidp
> > > 4. In the second call, there should not be loops at each vertex. > > Yes, there should be.  It's a weighted graph with loops on the vertices, > since the laplacian has nonzero diagonal entries. > > Thanks, > > Jason The diagonal entries in the laplacian give the out_degrees of the correspon

[sage-devel] bug in show method for DiGraphs

2009-03-20 Thread davidp
Hi, It seems to me that the show method for DiGraphs is not working correctly in Sage 3.4. EXAMPLE: sage: G = DiGraph({1:{2: 1}, 2:{1:1}}) sage: G.show() sage: DiGraph(G.laplacian_matrix()).show() 1. The first call to show draws the graph with an edge missing. 2. The second call produces edges

[sage-devel] Re: Google Summer of Code 2009

2009-03-08 Thread davidp
I have been working on a Sage package for the Abelian Sandpile Model: http://people.reed.edu/~davidp/412/ and I have a student that would love to work with me this summer to really polish it up. (A preliminary version of a sandpile applet he wrote is at www.reed.edu/~headb/sandpiles.) It

[sage-devel] weighted_adjacency_matrix() and laplacian() bug

2008-12-29 Thread davidp
] [1 0 0] [1 0 0] sage: G.laplacian_matrix() --- IndexErrorTraceback (most recent call last) /home/davidp/.sage/temp/xyzzy/16886/ _home_davidp_math_sandpile_sage_sandpile_sage_14.py in () >