Re: Fwd: Some questions related to Giraph Pur YARN implementation

2013-10-15 Thread Matthew Laird
how we serialize giraph-conf.xml in to HDFS. We can use HDFS paths instead of paths from client machine. @Eli I really appreciate your comments regarding above. I can create a JIRA ticket if needed. Thanks Milinda -- Milinda Pathirage twitter: milindalakmal skype: milinda.pathirage blog: htt

Re: Yarn application failure

2013-10-15 Thread Matthew Laird
;m guessing this has something to do with the -yj option and ensuring the jar is distributed to all the workers, am I looking in the correct direction or does anyone have advice on solving this issue? Thanks. On 13-10-14 04:55 PM, Matthew Laird wrote: After much googling I finally pieced together how

Yarn application failure

2013-10-14 Thread Matthew Laird
After much googling I finally pieced together how to run in pure yarn mode, first, for any future googlers here's the two command lines I used to build and run giraph head: mvn -Dhadoop.version=2.0.3-alpha -Phadoop_yarn -DskipTests clean install $HADOOP_HOME/bin/hadoop jar $GIRAPH_HOME/giraph

LocalJobRunner & examples

2013-10-13 Thread Matthew Laird
I've been trying to work through the Quick Start examples and adapting it to my local installation, I'm running Hadoop 2.0.5-alpha across 4 machines. I've done the checkout from github sudo git clone https://github.com/apache/giraph.git Applied the patch to ZooKeeperManager http://www.mail-a

Re: connected components example in giraph 1.0

2013-10-08 Thread Matthew Laird
though i have hadoop 2.0 i use MR1 not YARN. I'm sorry again. 2013/10/7 Matthew Laird mailto:lai...@sfu.ca>> Hmm, it seems there have been some recent pushes that have broken trunk as I discovered yesterday. :) But I guess that brings me back to my original question, to bu

Re: connected components example in giraph 1.0

2013-10-07 Thread Matthew Laird
it's 0.20xxx or tell it 2.0.5, or something else? Thanks. On 13-10-07 11:50 AM, Claudio Martella wrote: trunk is 1.1.0-SNAPSHOT. I believe the date refers to the last update to the site. On Mon, Oct 7, 2013 at 8:48 PM, Matthew Laird mailto:lai...@sfu.ca>> wrote: Thanks, which

Re: connected components example in giraph 1.0

2013-10-07 Thread Matthew Laird
ew I use giraph 1.1.0 and cdh4 hadoop 0.23 the patch of Marco: http://www.mail-archive.com/__user@giraph.apache.org/__msg00945/check.diff <http://www.mail-archive.com/user@giraph.apache.org/msg00945/check.diff> and build mvn clean install -P hadoop_cdh4.1.2 Il giorno 07/ott/2013 20:20, "

Re: connected components example in giraph 1.0

2013-10-07 Thread Matthew Laird
- Claudio Martella claudio.marte...@gmail.com <mailto:claudio.marte...@gmail.com> -- Claudio Martella claudio.marte...@gmail.com <mailto:claudio.marte...@gmail.com> -- Claudio Martella claudio.marte...@gmail.com <mailto:claudio.marte...@gmail.com> -- Matthew Laird Lead Software Developer, Bioinformatics Brinkman Laboratory Simon Fraser University, Burnaby, BC, Canada

Re: Giraph & yarn build

2013-10-06 Thread Matthew Laird
scripts which can use to submit jobs to YARN cluster (for pure YARN based implementation). So going with giraph version which is based on map-reduce API will be easy for you. Thanks Milinda On Sun, Oct 6, 2013 at 10:04 PM, Matthew Laird wrote: Hmm, is there a recommendation on a particular ver

Re: Giraph & yarn build

2013-10-06 Thread Matthew Laird
iguration, ApplicationId) ["org.apache.giraph.yarn.YarnUtils"] At YarnUtils.java:[lines 47-240] I guess this is what I get for playing with the trunk. :) But, what version was it that is mentioned in the previous mailing list threads that you can apply the patch to and get it compiled? Thanks

Re: Giraph & yarn build

2013-10-06 Thread Matthew Laird
, you need to specify hadoop.version system property. So command to build giraph with YARN (2.0.5) should be something like following. mvn -Phadoop_yarn -Dhadoop.version=2.0.5-alpha clean install Hope this helps. Thanks Milinda On Sun, Oct 6, 2013 at 9:04 PM, Matthew Laird wrote: Further, I let

Re: Giraph & yarn build

2013-10-06 Thread Matthew Laird
Further, I let it go and after two hours I see the file: /giraph-core/target/munged/main/org/apache/giraph/yarn/GiraphYarnTask.java.rej is now 295GB in size. I'm not sure what it's stuck doing after applying this patch... Thanks. On 06/10/13 16:13, Matthew Laird wrote: Hello,

Giraph & yarn build

2013-10-06 Thread Matthew Laird
Hello, I'm trying to build giraph against Hadoop 2.0.5, and I've been browsing the mailing list archives but am still having an issue. I found the previous thread where Eli points to https://issues.apache.org/jira/browse/GIRAPH-688 I've grabbed the patch and applied it against a clone from