Hi there! I have not been able to make pwiz-docker run in a mac computer (at least with M-series macs) but was able to use thermorawfileparser. https://github.com/compomics/ThermoRawFileParser LMK if either of those options work for you!
Best -Sebastian On Thursday, 28 November 2024 at 11:04:33 UTC-6 ARPITA TIWARI wrote: > Okay I will try to do it. Thank you very much. > Best > Arpita > > On Thu, Nov 28, 2024, 20:29 Robert Winkler <[email protected]> wrote: > >> Hi, you can convert the raw data to mzML on any computer that runs >> docker. E.g. I use this strategy to convert Thermo files on a Linux System. >> The chambm container simulates a Windows system and contains the necessary >> vendor libraries. My command looks like this from the command line: >> >> docker run -it -v /home/antix/Downloads/ThermoDDA:/data >> chambm/pwiz-skyline-i-agree-to-the-vendor-licenses wine msconvert >> /data/*.raw >> >> Best, Robert >> On Wednesday, 27 November 2024 at 12:00:18 UTC-6 David Shteynberg wrote: >> >>> Hello Arpita, >>> >>> Unfortunately, DLL files are Windows specific and do not function on >>> Mac. Whether or not Thermo is planning on providing RAW data access >>> libraries that function on Mac is a question for Thermo, but I suspect this >>> is not a top priority for most customers. I hope you are able to convert >>> your data to open formats on another computer and then continue using the >>> TPP on your Mac. >>> >>> Best, >>> -David >>> >>> On Tue, Nov 26, 2024 at 8:37 PM 'ARPITA TIWARI' via spctools-discuss < >>> [email protected]> wrote: >>> >>>> Sorry to disturb you but can I know why is it not possible on Mac? Why >>>> does Thermo libraries work in windows only? Is there any other solution ? >>>> Best regards >>>> Arpita >>>> >>>> On Wed, Nov 27, 2024 at 9:20 AM ARPITA TIWARI <[email protected]> >>>> wrote: >>>> >>>>> Dear David, >>>>> Okay will do that, thank you so much for your response. >>>>> Best regards >>>>> Arpita >>>>> >>>>> On Wed, Nov 27, 2024 at 9:01 AM 'David Shteynberg' via >>>>> spctools-discuss <[email protected]> wrote: >>>>> >>>>>> Hello Arpita, >>>>>> >>>>>> Thanks for your question. Conversion from RAW happens with the help >>>>>> of Thermo dll libraries which only function on windows. To process >>>>>> proteomics data with TPP on a Mac you have to start with mzML or mzXML >>>>>> data >>>>>> and convert the data on another computer. >>>>>> >>>>>> Best, >>>>>> David >>>>>> >>>>>> >>>>>> On Tue, Nov 26, 2024, 7:27 PM 'ARPITA TIWARI' via spctools-discuss < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Hello everyone, >>>>>>> I have attached the following error below I have installed the TPP >>>>>>> in M1 MAC os with the help of source link. Now I am trying to convert >>>>>>> .raw >>>>>>> file into mxML. Somehow, it isn"t happening. >>>>>>> I will be grateful if anyone an solve this problem. >>>>>>> Thank you >>>>>>> Best regards >>>>>>> Arpita >>>>>>> [image: Screenshot 2024-11-27 at 7.43.09 AM.png][image: Screenshot >>>>>>> 2024-11-27 at 8.29.55 AM.png] >>>>>>> >>>>>>> >>>>>>> [image: https://www.linkedin.com/in/gujarat-biotechnology-university] >>>>>>> <https://www.linkedin.com/in/gujarat-biotechnology-university> [image: >>>>>>> https://www.facebook.com/Gujarat-Biotechnology-University-101550609248432] >>>>>>> >>>>>>> <https://www.facebook.com/Gujarat-Biotechnology-University-101550609248432>[image: >>>>>>> >>>>>>> https://goo.gl/maps/xEm5CnhHXv21cehZ7] >>>>>>> <https://g.page/r/CbFLDpwlBbq7EBM/review> [image: >>>>>>> https://gbu.edu.in/images/footer/yt11.png] >>>>>>> <https://www.youtube.com/@gujaratbiotechnologyuniver1740> [image: >>>>>>> https://www.instagram.com/gujaratbiotechnologyuniversity/] >>>>>>> <https://www.instagram.com/gujaratbiotechnologyuniversity/>[image: >>>>>>> https://twitter.com/GujBiotechUni] >>>>>>> <https://twitter.com/GujBiotechUni> >>>>>>> This message contains confidential information and is intended only >>>>>>> for the individual named. 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