I think I have seen the same thing a few times on 965GM. Can you confirm
that this is indeed a render error, i.e. when you hover the mouse over
the icons, it shows tooltips from what should actually be there, not
what is shown on screen, and when you click, the action taken is not
necessarily from the icon that is shown? My keyboard layout applet is
sometimes not visible due to some other icon being duplicated, but I can
usually switch keyboard layout by finding the right spot and clicking.

Another thing that may hint to where the problem lies, is to turn
desktop effects on/off and see if it makes a difference.

-- 
[i945gm] Duplicated and missing applets in the applet panel on startup
https://bugs.launchpad.net/bugs/584898
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