I am also experiencing this issue - and I run offlineimap in a similar
way: launched from a shell script via cron every five minutes.

My shell script sleeps for 10 and then kills the child offlineimap
process if it is still running. This is because of another bug where
offlineimap will hang indefinitely if it is unable to reach one of the
IMAP servers ( or if my internet connection terminates temporarily ).

-- 
offlineimap constantly goes for a spin consuming 100% cpu
https://bugs.launchpad.net/bugs/364481
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