sure,
sorry, I'm not professional in Ubuntu that's why I'm asking too many.
On Tue, Dec 4, 2018 at 1:41 AM Christoph Junghans <jungh...@votca.org>
wrote:
> On Mon, Dec 3, 2018 at 2:19 PM Navid KhademAbbasi
> <navid.khademabbas...@gmail.com> wrote:
> >
> > Dear Dr. Junghans
> > my previous problem solved but in general installation, for "cmake
> -DBUILD_CSGAPPS=ON -DBUILD_CTP=ON -DBUILD_XTP=ON
> -DCMAKE_INSTALL_PREFIX=${prefix} .." command I had this error message which
> was the attachment file.
>
> Just read the error message, for some reason your gromacs installation
> wasn't found! Can you post your CMakeError.txt?
>
> Also if you don't need xtp and ctp, you can do -DBUILD_CTP=OFF and
> -DBUILD_XTP=OFF.
>
> Also on Ubuntu if you don't develop, you can just do:
> $ apt-get install votca-csg
>
> Christoph
>
> > Regards,
> > N. Khademabbasi
> >
> >
> > On Mon, Dec 3, 2018 at 2:44 AM Navid KhademAbbasi <
> navid.khademabbas...@gmail.com> wrote:
> >>
> >> Thank you for your response,
> >> my current Ubuntu version is 18.5
> >> Yes, I just work with the CSG.
> >>
> >> On Mon, Dec 3, 2018 at 2:39 AM Christoph Junghans <jungh...@votca.org>
> wrote:
> >>>
> >>>
> >>>
> >>> On Sun, Dec 2, 2018 at 16:05 Navid KhademAbbasi <
> navid.khademabbas...@gmail.com> wrote:
> >>>>
> >>>> Hi everyone,
> >>>> I am trying to install the dependencies for core functionality of
> ((apt-get install make cmake git g++ libexpat-dev libfftw3-dev libgsl-dev
> libboost-all-dev txt2tags libsqlite3-dev octave gnuplot python-numpy
> libhdf5-dev graphviz pkg-config psmisc libint2-dev libeigen3-dev libxc-dev
> libceres-dev libgromacs-dev gromacs-openmpi)), on Ubuntu and I've found the
> error message like "can't find libint2-dev" then I've searched this
> library, but I can't find it.
> >>>> I would be glad if you help me in this field.
> >>>
> >>> What version of ubuntu is this?
> >>>
> >>> And libint2 is only needed for xtp, so for csg just go ahead without
> it!
> >>>
> >>> Christoph
> >>>>
> >>>>
> >>>> Thanks
> >>>>
> >>>> Navid Khademabbasi
> >>>>
> >>>> --
> >>>> You received this message because you are subscribed to the Google
> Groups "votca" group.
> >>>> To unsubscribe from this group and stop receiving emails from it,
> send an email to votca+unsubscr...@googlegroups.com.
> >>>> To post to this group, send email to votca@googlegroups.com.
> >>>> Visit this group at https://groups.google.com/group/votca.
> >>>> For more options, visit https://groups.google.com/d/optout.
> >>>
> >>> --
> >>> Christoph Junghans
> >>> Web: http://www.compphys.de
> >>>
> >>> --
> >>> You received this message because you are subscribed to the Google
> Groups "votca" group.
> >>> To unsubscribe from this group and stop receiving emails from it, send
> an email to votca+unsubscr...@googlegroups.com.
> >>> To post to this group, send email to votca@googlegroups.com.
> >>> Visit this group at https://groups.google.com/group/votca.
> >>> For more options, visit https://groups.google.com/d/optout.
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an email to votca+unsubscr...@googlegroups.com.
> > To post to this group, send email to votca@googlegroups.com.
> > Visit this group at https://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/d/optout.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
> --
> You received this message because you are subscribed to the Google Groups
> "votca" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to votca+unsubscr...@googlegroups.com.
> To post to this group, send email to votca@googlegroups.com.
> Visit this group at https://groups.google.com/group/votca.
> For more options, visit https://groups.google.com/d/optout.
>
--
You received this message because you are subscribed to the Google Groups
"votca" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to votca+unsubscr...@googlegroups.com.
To post to this group, send email to votca@googlegroups.com.
Visit this group at https://groups.google.com/group/votca.
For more options, visit https://groups.google.com/d/optout.
Determining if the pthread_create exist failed with the following output:
Change Dir: /home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_c2851/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_c2851.dir/build.make CMakeFiles/cmTC_c2851.dir/build
gmake[1]: Entering directory `/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_c2851.dir/CheckSymbolExists.c.o
/home-gs/compiler/GCC/gcc-8.1.0/build/bin/gcc -o CMakeFiles/cmTC_c2851.dir/CheckSymbolExists.c.o -c /home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTC_c2851
/home-gs/compiler/cmake/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c2851.dir/link.txt --verbose=1
/home-gs/compiler/GCC/gcc-8.1.0/build/bin/gcc -rdynamic CMakeFiles/cmTC_c2851.dir/CheckSymbolExists.c.o -o cmTC_c2851
CMakeFiles/cmTC_c2851.dir/CheckSymbolExists.c.o: In function `main':
CheckSymbolExists.c:(.text+0x16): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
gmake[1]: *** [cmTC_c2851] Error 1
gmake[1]: Leaving directory `/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_c2851/fast] Error 2
File /home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
#else
(void)argc;
return 0;
#endif
}
Determining if the function pthread_create exists in the pthreads failed with the following output:
Change Dir: /home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_61af4/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_61af4.dir/build.make CMakeFiles/cmTC_61af4.dir/build
gmake[1]: Entering directory `/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_61af4.dir/CheckFunctionExists.c.o
/home-gs/compiler/GCC/gcc-8.1.0/build/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_61af4.dir/CheckFunctionExists.c.o -c /home-gs/compiler/cmake/share/cmake-3.12/Modules/CheckFunctionExists.c
Linking C executable cmTC_61af4
/home-gs/compiler/cmake/bin/cmake -E cmake_link_script CMakeFiles/cmTC_61af4.dir/link.txt --verbose=1
/home-gs/compiler/GCC/gcc-8.1.0/build/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic CMakeFiles/cmTC_61af4.dir/CheckFunctionExists.c.o -o cmTC_61af4 -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
gmake[1]: *** [cmTC_61af4] Error 1
gmake[1]: Leaving directory `/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_61af4/fast] Error 2
Performing C SOURCE FILE Test HAVE_AIX failed with the following output:
Change Dir: /home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_ccb69/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_ccb69.dir/build.make CMakeFiles/cmTC_ccb69.dir/build
gmake[1]: Entering directory `/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_ccb69.dir/src.c.o
/home-gs/compiler/GCC/gcc-8.1.0/build/bin/gcc -DHAVE_AIX -o CMakeFiles/cmTC_ccb69.dir/src.c.o -c /home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp/src.c
/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp/src.c: In function 'main':
/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp/src.c:3:8: error: #error
#error
^~~~~
gmake[1]: *** [CMakeFiles/cmTC_ccb69.dir/src.c.o] Error 1
gmake[1]: Leaving directory `/home-gs/users/nsgs066_LLJ/software/votca/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_ccb69/fast] Error 2
Source file was:
int main(void) {
#ifndef _AIX
#error
#endif
return 0;
}
Performing C SOURCE FILE Test HAVE_AIX failed with the following output:
Change Dir: /home/navid/votca/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_846d8/fast"
/usr/bin/make -f CMakeFiles/cmTC_846d8.dir/build.make CMakeFiles/cmTC_846d8.dir/build
make[1]: Entering directory '/home/navid/votca/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_846d8.dir/src.c.o
/usr/bin/cc -DHAVE_AIX -o CMakeFiles/cmTC_846d8.dir/src.c.o -c /home/navid/votca/build/CMakeFiles/CMakeTmp/src.c
/home/navid/votca/build/CMakeFiles/CMakeTmp/src.c: In function ‘main’:
/home/navid/votca/build/CMakeFiles/CMakeTmp/src.c:3:8: error: #error
#error
^~~~~
CMakeFiles/cmTC_846d8.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_846d8.dir/src.c.o' failed
make[1]: *** [CMakeFiles/cmTC_846d8.dir/src.c.o] Error 1
make[1]: Leaving directory '/home/navid/votca/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_846d8/fast' failed
make: *** [cmTC_846d8/fast] Error 2
Source file was:
int main(void) {
#ifndef _AIX
#error
#endif
return 0;
}
Determining if the function gmx_version exists in the /home/navid/gromacs/lib/libgromacs.so failed with the following output:
Change Dir: /home/navid/votca/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_79e3c/fast"
/usr/bin/make -f CMakeFiles/cmTC_79e3c.dir/build.make CMakeFiles/cmTC_79e3c.dir/build
make[1]: Entering directory '/home/navid/votca/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_79e3c.dir/CheckFunctionExists.cpp.o
/usr/bin/c++ -DCHECK_FUNCTION_EXISTS=gmx_version -o CMakeFiles/cmTC_79e3c.dir/CheckFunctionExists.cpp.o -c /home/navid/votca/csg/CMakeModules/CheckFunctionExists.cpp
make[1]: *** No rule to make target '/home/navid/gromacs/lib/libgromacs.so', needed by 'cmTC_79e3c'. Stop.
make[1]: Leaving directory '/home/navid/votca/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_79e3c/fast' failed
make: *** [cmTC_79e3c/fast] Error 2
