almost there -- you did not include the 4th ittem
On 9/30/2022 11:18 AM, fernanda rohrsetzer wrote:
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I'm so sorry...
The FSGD file is attached (called "TestCT.txt).
The design matrix (examining difference in thickness after controlling
for effects of age, sex and Average thickness)
1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-HR_testcov.mtx
1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-MDD_testcov.mtx
0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > HR-MDD_testcov.mtx
glmfit:
mri_glmfit --y lh.10.teste.volume.mgh --fsgd testCV.fsgd --C
Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C
Contrasts/HR-MDD_testcov.mtx --surf fsaverage lh --cortex --glmdir
lh.groupteste.volume.glmdir --eres-save
Print of the screen is attached to (3 images).
Thank you so much!!!
Fernanda
Em sex., 30 de set. de 2022 às 11:25, Douglas N. Greve
<dgr...@mgh.harvard.edu> escreveu:
That terminal output asks you to send 4 things, but you only sent 2
On 9/29/2022 11:51 AM, fernanda rohrsetzer wrote:
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Hi,
I attempted to execute mri_glmfit on my structural data through the
following command -
mri_glmfit --y lh.10.teste.thickness.mgh --fsgd testCT.fsgd --C
Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C
Contrasts/HR-MDD_testcov.mtx --surf fsaverage lh --cortex --glmdir
lh.groupteste.thickness.glmdir --eres-save
But it gives me an error (attached below) indicating a formatting problem
in my FSGD file (attached).
I have been trying to figure that out for a while. But I am unable to debug
it.
Could someone please help me resolve it?
Thanks for your time.
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