Andrew 
the new root filesystem needs permission for other user than root.

the old one has full permissions for evryone and everything:
drwxrwxrwt   17 root     root          380 Jun 25 12:48 .
drwxrwxrwt   17 root     root          380 Jun 25 12:48 ..

The new one only for root
drwx------   17 root     root            0 Jun 25 12:51 .
drwx------   17 root     root            0 Jun 25 12:51 ..

That leads to a failing start for dnsmasq cause it does a switch to user 
nobody during startup, who can't access files in /etc...

kp

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