Carl,
Consider performing these tasks without the use of the 'devtools' package,
running the following from a shell.
```shell
R CMD build .
R CMD INSTALL --with-keep.source ./SPAS_*.tar.gz
# (assuming you use roxygen2)
Rscript -e "roxygen2::roxygenize(load = 'installed')"
R CMD check --as-cran ./SPAS_*.tar.gz
```
If those commands are successful, then you know the problem lies somewhere
in the difference between that approach and what 'devtools' does, which
might help to narrow it down.
Cheers,
-James
On Tue, Jan 23, 2024 at 9:23 PM Carl Schwarz <cschwarzstatsf...@gmail.com>
wrote:
> I'm trying to update my SPAS package to respond to a CRAN check. Before
> starting the changes, I tried to rebuild my package, but now get a segfault
> when I try to do a devtools::document() or devtools::check(args =
> c('--as-cran')). See below for output from the Rstudio "Build" window.
>
> I've
> - reinstalled ALL packages
> - reinstalled R (4.3.2 on MacOS Intel Chip)
> - reinstalled Rstudio
>
> When I try a rebuild/document on a sister package it runs fine, so I
> suspect that the problem is related to using a TMB module that is part of
> the SPAS package written in Cpp.
>
> How do I start to "debug" this to identify the problem?
>
> Thanks
> Carl Schwarz
>
>
>
>
> ==> devtools::document(roclets = c('rd', 'collate', 'namespace',
> 'vignette'))
> ℹ Updating SPAS documentationℹ Loading SPAS
>
> *** caught segfault ***
> address 0x54e40, cause 'memory not mapped'
>
> Traceback:
> 1: dyn.load(dll_copy_file)
> 2: library.dynam2(path, lib)
> 3: load_dll(path)
> 4: pkgload::load_all(path, helpers = FALSE, attach_testthat = FALSE)
> 5: load_code(base_path)
> 6: roxygen2::roxygenise(pkg$path, roclets)
> 7: devtools::document(roclets = c("rd", "collate", "namespace",
> "vignette"))
> 8: withCallingHandlers(expr, packageStartupMessage = function(c)
> tryInvokeRestart("muffleMessage"))
> 9: suppressPackageStartupMessages({ oldLC <-
> Sys.getlocale(category = "LC_COLLATE") Sys.setlocale(category =
> "LC_COLLATE", locale = "C") on.exit(Sys.setlocale(category =
> "LC_COLLATE", locale = oldLC)) devtools::document(roclets = c("rd",
> "collate", "namespace", "vignette"))})
> An irrecoverable exception occurred. R is aborting now ...
>
> Exited with status 139.
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
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> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
James Lamb (he/him)
GitHub <https://github.com/jameslamb> | LinkedIn
<https://www.linkedin.com/in/jameslamb1/>
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