Hi folks, I'm starting to use APE, and am trying to write a script to iteratively prune taxa from an alignment / tree combination and print the reduced datasets to separate files.
I was thinking of using some combination of drop.tip + DNAbin, but I am unsure of how to link removing the tip labels in the tree and the corresponding taxon labels in the alignment in such a way that the iteration completes without redundancy. Is there a function or loop you could recommend? ~John _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
