Hi Troels, Here is a list of the packages I got off of the fedora package list Openmpi: openmpi-1.7.3-1.fc.20(64-bit) openmpi-devel-1.7.3-1.fc20(64bit) pypar-openmpi-2.1.5_108_3.fc.20(64bit) python3-mpi4py-1.3.1-1.fc20(64bit)
Mpi4py mpi4py-common-1.3.1-1.fc20 mpi4py-mpich-1.3.1-1.fc20 mpi4py-openmpi-1.3.1-1.fc20 python3-mpi4py-mpich-1.3.1-1.fc20 python3-mpi4py-openmpi-1.3.1-1.fc20 Note: I now know the mpich is extra and pointless. I only use the openmpi when I load my modules. I have not compiled or configured anything with these packages. I just installed them directly from the package list. If you need any more info on what is installed on these computers let me know! Sincerely, Sam On Fri, Sep 30, 2016 at 2:23 PM, Troels Emtekær Linnet < tlin...@nmr-relax.com> wrote: > Hi Sam. > > I am trying to setup myself on Google Cloud Platform. > > Here I setting up for a Redhat 6 distro, in hope it gets close to Fedora > 20. > > I am currently making a deployment script. > > The process is written here: > http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_ > Computing#Install_packages_at_server > > But that is a little old, since the configurations has changed a little > since 2015. > And the last deployment script is for Ubuntu. > > Getting the packages right is a pain.... ;) > > Let me return when I know some more. > > > > 2016-09-30 23:03 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: > >> Hi Troels, >> >> I attempted the full path >> mpirun -np 5 ~/relax-4.0.2/relax --multi="mpi4py" -v >> and still got the same result. No output. >> >> Sincerely, >> Sam >> >> On Fri, Sep 30, 2016 at 11:43 AM, Troels Emtekær Linnet < >> tlin...@nmr-relax.com> wrote: >> >>> Hi Sam. >>> >>> Hm. Alright. >>> >>> But to rule it out in my head, can you try this: >>> >>> mpirun -np 5 /home/users/software/relax-4.0.2/relax --multi="mpi4py" -v >>> >>> Or similar destination path. >>> But please try the full path. >>> >>> Best >>> Troels >>> >>> 2016-09-30 19:47 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>> >>>> I get the same results with the full path mpirun -np 5 >>>> ~/relax-4.0.2/relax --multi="mpi4py" -v >>>> Still no output. >>>> >>>> Sincerely, >>>> Sam >>>> >>>> On Fri, Sep 30, 2016 at 10:39 AM, Troels Emtekær Linnet < >>>> tlin...@nmr-relax.com> wrote: >>>> >>>>> Sam. >>>>> >>>>> All points to: >>>>> "./relax" is NOT calling relax in the current folder. >>>>> >>>>> It is because the command "mpirun" is running it. >>>>> >>>>> Please provide the FULL path to relax. >>>>> >>>>> I think I have written this before. ;) >>>>> >>>>> Best >>>>> Troels >>>>> >>>>> >>>>> 2016-09-30 19:24 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>>> >>>>>> Sorry, you're right, I re-ran the mpirun -np 5 ./relax >>>>>> --multi="mpi4py" -v >>>>>> and got no output. So I'm just curious for the other computers I >>>>>> download >>>>>> openmpi in, just installing it and compiling it isn't enough? There >>>>>> are >>>>>> some configurations you have to make to have it run on relax? >>>>>> >>>>>> Sincerely, >>>>>> Sam >>>>>> >>>>>> On Fri, Sep 30, 2016 at 10:17 AM, Edward d'Auvergne < >>>>>> edw...@nmr-relax.com> >>>>>> wrote: >>>>>> >>>>>> > On 30 September 2016 at 19:12, Mahdi, Sam < >>>>>> sam.mahdi....@my.csun.edu> >>>>>> > wrote: >>>>>> > > Hi Edward, >>>>>> > > >>>>>> > > So I ran the the mpirun commands you suggested. The echo world >>>>>> works >>>>>> > fine. I >>>>>> > > get the same results you did. For the relax one, this is the >>>>>> output I >>>>>> > > recieved >>>>>> > > [~/relax-4.0.2]> mpirun -np 5 ./relax --multi="mpi4py" -v relax >>>>>> 4.0.2 >>>>>> > > Usage: relax [options] [script_file] >>>>>> > > >>>>>> > > RelaxError: incorrect number of arguments >>>>>> > >>>>>> > Have a close look at my original text: >>>>>> > >>>>>> > [edward@localhost ~]$ mpirun -np 5 /data/relax/tags/4.0.2/relax >>>>>> > --multi="mpi4py" -v >>>>>> > relax 4.0.2 >>>>>> > [edward@localhost ~]$ >>>>>> > >>>>>> > Note how "relax 4.0.2" is on a different line - that is the relax >>>>>> > output, not the command line input. Try again without that text. >>>>>> > >>>>>> > >>>>>> > > RelaxError: ambiguous option: --v (--verification-tests, >>>>>> --version?) >>>>>> > >>>>>> > This is because the double-dash to single-dash conversion is only in >>>>>> > the HTML version of the relax manual, and not emails. Run "relax >>>>>> -h" >>>>>> > to see a description of this option. >>>>>> > >>>>>> > >>>>>> > > Also, the reason its ./relax is because I have relax 2.2.5 >>>>>> installed, >>>>>> > and I >>>>>> > > have that set up as an Alias, so if I just type relax, it'll open >>>>>> up >>>>>> > relax >>>>>> > > 2.2.5. So I went to the actual relax-4.0.2. directory instead of >>>>>> > indicating >>>>>> > > its path and just typed ./relax. (By I, I mean the administrator >>>>>> of this >>>>>> > > computer, I do not have root access to this computer). >>>>>> > >>>>>> > You should set your alias to the relax-4.0.2 version instead. The >>>>>> > 2.2.5 version is very, very old, and many bugs have been fixed since >>>>>> > then. >>>>>> > >>>>>> > Regards, >>>>>> > >>>>>> > Edward >>>>>> > >>>>>> _______________________________________________ >>>>>> relax (http://www.nmr-relax.com) >>>>>> >>>>>> This is the relax-users mailing list >>>>>> relax-users@gna.org >>>>>> >>>>>> To unsubscribe from this list, get a password >>>>>> reminder, or change your subscription options, >>>>>> visit the list information page at >>>>>> https://mail.gna.org/listinfo/relax-users >>>>>> >>>>> >>>>> >>>> >>> >> > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
