Hi Sam. Can you try this in your terminal. I am trying to write a script, which should check at users setup mpirun.
-- URL= http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scripts/openmpi_test_install.sh wget $URL # Source functions source openmpi_test_install.sh testopenmpi 2016-10-01 0:22 GMT+02:00 Troels Emtekær Linnet <tlin...@nmr-relax.com>: > Hi Sam. > > Can you try: > mpirun --version > > Thanks > > 2016-10-01 0:00 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: > >> Hi Troels, >> >> Here is a list of the packages I got off of the fedora package list >> Openmpi: >> openmpi-1.7.3-1.fc.20(64-bit) >> openmpi-devel-1.7.3-1.fc20(64bit) >> pypar-openmpi-2.1.5_108_3.fc.20(64bit) >> python3-mpi4py-1.3.1-1.fc20(64bit) >> >> Mpi4py >> mpi4py-common-1.3.1-1.fc20 >> mpi4py-mpich-1.3.1-1.fc20 >> mpi4py-openmpi-1.3.1-1.fc20 >> python3-mpi4py-mpich-1.3.1-1.fc20 >> python3-mpi4py-openmpi-1.3.1-1.fc20 >> >> Note: I now know the mpich is extra and pointless. I only use the openmpi >> when I load my modules. I have not compiled or configured anything with >> these packages. I just installed them directly from the package list. If >> you need any more info on what is installed on these computers let me know! >> >> Sincerely, >> Sam >> >> >> On Fri, Sep 30, 2016 at 2:23 PM, Troels Emtekær Linnet < >> tlin...@nmr-relax.com> wrote: >> >>> Hi Sam. >>> >>> I am trying to setup myself on Google Cloud Platform. >>> >>> Here I setting up for a Redhat 6 distro, in hope it gets close to Fedora >>> 20. >>> >>> I am currently making a deployment script. >>> >>> The process is written here: >>> http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computin >>> g#Install_packages_at_server >>> >>> But that is a little old, since the configurations has changed a little >>> since 2015. >>> And the last deployment script is for Ubuntu. >>> >>> Getting the packages right is a pain.... ;) >>> >>> Let me return when I know some more. >>> >>> >>> >>> 2016-09-30 23:03 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>> >>>> Hi Troels, >>>> >>>> I attempted the full path >>>> mpirun -np 5 ~/relax-4.0.2/relax --multi="mpi4py" -v >>>> and still got the same result. No output. >>>> >>>> Sincerely, >>>> Sam >>>> >>>> On Fri, Sep 30, 2016 at 11:43 AM, Troels Emtekær Linnet < >>>> tlin...@nmr-relax.com> wrote: >>>> >>>>> Hi Sam. >>>>> >>>>> Hm. Alright. >>>>> >>>>> But to rule it out in my head, can you try this: >>>>> >>>>> mpirun -np 5 /home/users/software/relax-4.0.2/relax --multi="mpi4py" >>>>> -v >>>>> >>>>> Or similar destination path. >>>>> But please try the full path. >>>>> >>>>> Best >>>>> Troels >>>>> >>>>> 2016-09-30 19:47 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>>> >>>>>> I get the same results with the full path mpirun -np 5 >>>>>> ~/relax-4.0.2/relax --multi="mpi4py" -v >>>>>> Still no output. >>>>>> >>>>>> Sincerely, >>>>>> Sam >>>>>> >>>>>> On Fri, Sep 30, 2016 at 10:39 AM, Troels Emtekær Linnet < >>>>>> tlin...@nmr-relax.com> wrote: >>>>>> >>>>>>> Sam. >>>>>>> >>>>>>> All points to: >>>>>>> "./relax" is NOT calling relax in the current folder. >>>>>>> >>>>>>> It is because the command "mpirun" is running it. >>>>>>> >>>>>>> Please provide the FULL path to relax. >>>>>>> >>>>>>> I think I have written this before. ;) >>>>>>> >>>>>>> Best >>>>>>> Troels >>>>>>> >>>>>>> >>>>>>> 2016-09-30 19:24 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>>>>> >>>>>>>> Sorry, you're right, I re-ran the mpirun -np 5 ./relax >>>>>>>> --multi="mpi4py" -v >>>>>>>> and got no output. So I'm just curious for the other computers I >>>>>>>> download >>>>>>>> openmpi in, just installing it and compiling it isn't enough? There >>>>>>>> are >>>>>>>> some configurations you have to make to have it run on relax? >>>>>>>> >>>>>>>> Sincerely, >>>>>>>> Sam >>>>>>>> >>>>>>>> On Fri, Sep 30, 2016 at 10:17 AM, Edward d'Auvergne < >>>>>>>> edw...@nmr-relax.com> >>>>>>>> wrote: >>>>>>>> >>>>>>>> > On 30 September 2016 at 19:12, Mahdi, Sam < >>>>>>>> sam.mahdi....@my.csun.edu> >>>>>>>> > wrote: >>>>>>>> > > Hi Edward, >>>>>>>> > > >>>>>>>> > > So I ran the the mpirun commands you suggested. The echo world >>>>>>>> works >>>>>>>> > fine. I >>>>>>>> > > get the same results you did. For the relax one, this is the >>>>>>>> output I >>>>>>>> > > recieved >>>>>>>> > > [~/relax-4.0.2]> mpirun -np 5 ./relax --multi="mpi4py" -v >>>>>>>> relax 4.0.2 >>>>>>>> > > Usage: relax [options] [script_file] >>>>>>>> > > >>>>>>>> > > RelaxError: incorrect number of arguments >>>>>>>> > >>>>>>>> > Have a close look at my original text: >>>>>>>> > >>>>>>>> > [edward@localhost ~]$ mpirun -np 5 /data/relax/tags/4.0.2/relax >>>>>>>> > --multi="mpi4py" -v >>>>>>>> > relax 4.0.2 >>>>>>>> > [edward@localhost ~]$ >>>>>>>> > >>>>>>>> > Note how "relax 4.0.2" is on a different line - that is the relax >>>>>>>> > output, not the command line input. Try again without that text. >>>>>>>> > >>>>>>>> > >>>>>>>> > > RelaxError: ambiguous option: --v (--verification-tests, >>>>>>>> --version?) >>>>>>>> > >>>>>>>> > This is because the double-dash to single-dash conversion is only >>>>>>>> in >>>>>>>> > the HTML version of the relax manual, and not emails. Run "relax >>>>>>>> -h" >>>>>>>> > to see a description of this option. >>>>>>>> > >>>>>>>> > >>>>>>>> > > Also, the reason its ./relax is because I have relax 2.2.5 >>>>>>>> installed, >>>>>>>> > and I >>>>>>>> > > have that set up as an Alias, so if I just type relax, it'll >>>>>>>> open up >>>>>>>> > relax >>>>>>>> > > 2.2.5. So I went to the actual relax-4.0.2. directory instead of >>>>>>>> > indicating >>>>>>>> > > its path and just typed ./relax. (By I, I mean the >>>>>>>> administrator of this >>>>>>>> > > computer, I do not have root access to this computer). >>>>>>>> > >>>>>>>> > You should set your alias to the relax-4.0.2 version instead. The >>>>>>>> > 2.2.5 version is very, very old, and many bugs have been fixed >>>>>>>> since >>>>>>>> > then. >>>>>>>> > >>>>>>>> > Regards, >>>>>>>> > >>>>>>>> > Edward >>>>>>>> > >>>>>>>> _______________________________________________ >>>>>>>> relax (http://www.nmr-relax.com) >>>>>>>> >>>>>>>> This is the relax-users mailing list >>>>>>>> relax-users@gna.org >>>>>>>> >>>>>>>> To unsubscribe from this list, get a password >>>>>>>> reminder, or change your subscription options, >>>>>>>> visit the list information page at >>>>>>>> https://mail.gna.org/listinfo/relax-users >>>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
