I have attached the output of ./configure --with-python=3. On Tuesday, September 10, 2019 at 3:53:06 PM UTC+2, Dima Pasechnik wrote:
> On Tue, Sep 10, 2019 at 2:16 PM Mariel Supina > <mariel...@berkeley.edu <javascript:>> wrote: > > > > Hi, > > > > On Tuesday, September 10, 2019 at 2:51:27 PM UTC+2, Dima Pasechnik > wrote: > >> > >> On Tue, Sep 10, 2019 at 1:36 PM Mariel Supina > >> <mariel...@berkeley.edu> wrote: > >> > > >> > On Debian stretch, I get a compilation error making sage 8.9.beta9. > The problem is in the package "cypari", the relevant log is attached: > >> > >> Are you upgrading? Building from scratch? > > > > > > I am building from scratch with python3. > > > >> > >> > >> The interesting line is > >> > >> error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' > >> > >> This appears to be related to > >> https://trac.sagemath.org/ticket/28242 > >> Perhaps it ought to be improved. > > > > > > The compilation used to work fine on the machines, so that could be it? > > > >> > >> > >> It looks like you're trying to use a system installation of Pari/GP, > rather > >> than build Sage's Pari. What parts of Pari (Pari-related packages?) > >> do you have on your Debian system? > > > > > > The computer on which I try to compile is maintained by my department's > IT, so I am not completely aware of all the packages that might or might > not be installed. > > > > How can I figure out which pari (and which packages) are installed? > > what is the output of > > gp --version > GP/PARI CALCULATOR Version 2.9.1 (released) amd64 running linux (x86-64/GMP-6.1.1 kernel) 64-bit version compiled: Dec 1 2016, gcc version 6.2.1 20161124 (Debian 6.2.1-5) threading engine: pthread (readline v7.0 disabled, extended help enabled) > > and of > > echo 'default(datadir)' | gp -qf > "/usr/share/pari" > > And what is the output of > > which gp > /usr/bin/gp > > Thanks. > > >> > >> > >> Anyhow, Pari in Stretch is too old, but you should be able to use the > >> one from backports: > >> > >> https://packages.debian.org/stretch-backports/libpari-dev > > > > > > I am afraid that I do not have the rights to install libpari systemwide. > Hmm. > > > >> > >> > >> > >> Thanks > >> Dima > >> > > >> > Found local metadata for cypari-2.1.1 > >> > Attempting to download package cypari2-2.1.1.tar.gz from mirrors > >> > > https://mirror.koddos.net/sagemath/spkg/upstream/cypari/cypari2-2.1.1.tar.gz > >> > > [......................................................................] > >> > cypari-2.1.1 > >> > ==================================================== > >> > Setting up build directory for cypari-2.1.1 > >> > Finished extraction > >> > Applying patches from ../patches... > >> > Applying ../patches/trashcan.patch > >> > patching file cypari2/gen.pxd > >> > patching file cypari2/gen.pyx > >> > Hunk #1 succeeded at 141 (offset 6 lines). > >> > patching file cypari2/pari_instance.pyx > >> > **************************************************** > >> > Host system: > >> > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) > x86_64 GNU/Linux > >> > **************************************************** > >> > C compiler: gcc > >> > C compiler version: > >> > Using built-in specs. > >> > COLLECT_GCC=gcc > >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper > >> > Target: x86_64-linux-gnu > >> > Configured with: ../src/configure -v --with-pkgversion='Debian > 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr > --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared > --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext > --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ > --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes > --with-default-libstdcxx-abi=new --enable-gnu-unique-object > --disable-vtable-verify --enable-libmpx --enable-plugin > --enable-default-pie --with-system-zlib --disable-browser-plugin > --enable-java-awt=gtk --enable-gtk-cairo > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home > --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 > --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar > --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch > --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 > --enable-multilib --with-tune=generic --enable-checking=release > --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu > >> > Thread model: posix > >> > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) > >> > **************************************************** > >> > Package 'cypari' is currently not installed > >> > No legacy uninstaller found for 'cypari'; nothing to do > >> > Installing cypari-2.1.1 > >> > Installing package cypari2 using pip2 > >> > Ignoring indexes: https://pypi.org/simple > >> > Created temporary directory: /tmp/pip-ephem-wheel-cache-EMVpJz > >> > Created temporary directory: /tmp/pip-req-tracker-wfmzIV > >> > Created requirements tracker '/tmp/pip-req-tracker-wfmzIV' > >> > Created temporary directory: /tmp/pip-install-HkyCL2 > >> > Processing > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > >> > Created temporary directory: /tmp/pip-req-build-MoH_HZ > >> > Added > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src to > build tracker '/tmp/pip-req-tracker-wfmzIV' > >> > Running setup.py (path:/tmp/pip-req-build-MoH_HZ/setup.py) egg_info > for package from > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > >> > Running command python setup.py egg_info > >> > running egg_info > >> > creating pip-egg-info/cypari2.egg-info > >> > writing requirements to > pip-egg-info/cypari2.egg-info/requires.txt > >> > writing pip-egg-info/cypari2.egg-info/PKG-INFO > >> > writing top-level names to > pip-egg-info/cypari2.egg-info/top_level.txt > >> > writing dependency_links to > pip-egg-info/cypari2.egg-info/dependency_links.txt > >> > writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt' > >> > error: [Errno 2] No such file or directory: > '/usr/share/pari/pari.desc' > >> > Cleaning up... > >> > Removing source in /tmp/pip-req-build-MoH_HZ > >> > Removed > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > from build tracker '/tmp/pip-req-tracker-wfmzIV' > >> > Removed build tracker '/tmp/pip-req-tracker-wfmzIV' > >> > Command "python setup.py egg_info" failed with error code 1 in > /tmp/pip-req-build-MoH_HZ/ > >> > Exception information: > >> > Traceback (most recent call last): > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", > > line 143, in main > >> > status = self.run(options, args) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", > > line 318, in run > >> > resolver.resolve(requirement_set) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 102, in resolve > >> > self._resolve_one(requirement_set, req) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 256, in _resolve_one > >> > abstract_dist = self._get_abstract_dist_for(req_to_install) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 209, in _get_abstract_dist_for > >> > self.require_hashes > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 298, in prepare_linked_requirement > >> > abstract_dist.prep_for_dist(finder, self.build_isolation) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 126, in prep_for_dist > >> > self.req.run_egg_info() > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", > > line 473, in run_egg_info > >> > command_desc='python setup.py egg_info') > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/utils/misc.py", > > line 705, in call_subprocess > >> > % (command_desc, proc.returncode, cwd)) > >> > InstallationError: Command "python setup.py egg_info" failed with > error code 1 in /tmp/pip-req-build-MoH_HZ/ > >> > Error: installing with pip2 failed > >> > > ******************************************************************************** > > > >> > Error installing cypari-2.1.1 > >> > > ******************************************************************************** > > > >> > > >> > real 0m1.345s > >> > user 0m1.088s > >> > sys 0m0.184s > >> > > ************************************************************************ > >> > Error installing package cypari-2.1.1 > >> > > ************************************************************************ > >> > Please email sage-devel (http://groups.google.com/group/sage-devel) > >> > explaining the problem and including the log file > >> > /srv/public/shared/sage/logs/pkgs/cypari-2.1.1.log > >> > Describe your computer, operating system, etc. > >> > If you want to try to fix the problem yourself, *don't* just cd to > >> > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1 and > type 'make' or whatever is appropriate. > >> > Instead, the following commands setup all environment variables > >> > correctly and load a subshell for you to debug the error: > >> > (cd '/srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1' > && '/srv/public/shared/sage/sage' --sh) > >> > When you are done debugging, you can type "exit" to leave the > subshell. > >> > > ************************************************************************ > >> > Found local metadata for cypari-2.1.1 > >> > Using cached file > /srv/public/shared/sage/upstream/cypari2-2.1.1.tar.gz > >> > cypari-2.1.1 > >> > ==================================================== > >> > Setting up build directory for cypari-2.1.1 > >> > Finished extraction > >> > Applying patches from ../patches... > >> > Applying ../patches/trashcan.patch > >> > patching file cypari2/gen.pxd > >> > patching file cypari2/gen.pyx > >> > Hunk #1 succeeded at 141 (offset 6 lines). > >> > patching file cypari2/pari_instance.pyx > >> > **************************************************** > >> > Host system: > >> > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) > x86_64 GNU/Linux > >> > **************************************************** > >> > C compiler: gcc > >> > C compiler version: > >> > Using built-in specs. > >> > COLLECT_GCC=gcc > >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper > >> > Target: x86_64-linux-gnu > >> > Configured with: ../src/configure -v --with-pkgversion='Debian > 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr > --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared > --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext > --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ > --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes > --with-default-libstdcxx-abi=new --enable-gnu-unique-object > --disable-vtable-verify --enable-libmpx --enable-plugin > --enable-default-pie --with-system-zlib --disable-browser-plugin > --enable-java-awt=gtk --enable-gtk-cairo > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home > --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 > --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar > --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch > --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 > --enable-multilib --with-tune=generic --enable-checking=release > --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu > >> > Thread model: posix > >> > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) > >> > **************************************************** > >> > Package 'cypari' is currently not installed > >> > No legacy uninstaller found for 'cypari'; nothing to do > >> > Installing cypari-2.1.1 > >> > Installing package cypari2 using pip2 > >> > Ignoring indexes: https://pypi.org/simple > >> > Created temporary directory: /tmp/pip-ephem-wheel-cache-4L98l9 > >> > Created temporary directory: /tmp/pip-req-tracker-mosN7y > >> > Created requirements tracker '/tmp/pip-req-tracker-mosN7y' > >> > Created temporary directory: /tmp/pip-install-AHSkDU > >> > Processing > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > >> > Created temporary directory: /tmp/pip-req-build-eMwGZT > >> > Added > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src to > build tracker '/tmp/pip-req-tracker-mosN7y' > >> > Running setup.py (path:/tmp/pip-req-build-eMwGZT/setup.py) egg_info > for package from > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > >> > Running command python setup.py egg_info > >> > running egg_info > >> > creating pip-egg-info/cypari2.egg-info > >> > writing requirements to > pip-egg-info/cypari2.egg-info/requires.txt > >> > writing pip-egg-info/cypari2.egg-info/PKG-INFO > >> > writing top-level names to > pip-egg-info/cypari2.egg-info/top_level.txt > >> > writing dependency_links to > pip-egg-info/cypari2.egg-info/dependency_links.txt > >> > writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt' > >> > error: [Errno 2] No such file or directory: > '/usr/share/pari/pari.desc' > >> > Cleaning up... > >> > Removing source in /tmp/pip-req-build-eMwGZT > >> > Removed > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > from build tracker '/tmp/pip-req-tracker-mosN7y' > >> > Removed build tracker '/tmp/pip-req-tracker-mosN7y' > >> > Command "python setup.py egg_info" failed with error code 1 in > /tmp/pip-req-build-eMwGZT/ > >> > Exception information: > >> > Traceback (most recent call last): > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", > > line 143, in main > >> > status = self.run(options, args) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", > > line 318, in run > >> > resolver.resolve(requirement_set) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 102, in resolve > >> > self._resolve_one(requirement_set, req) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 256, in _resolve_one > >> > abstract_dist = self._get_abstract_dist_for(req_to_install) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 209, in _get_abstract_dist_for > >> > self.require_hashes > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 298, in prepare_linked_requirement > >> > abstract_dist.prep_for_dist(finder, self.build_isolation) > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 126, in prep_for_dist > >> > self.req.run_egg_info() > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", > > line 473, in run_egg_info > >> > command_desc='python setup.py egg_info') > >> > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/utils/misc.py", > > line 705, in call_subprocess > >> > % (command_desc, proc.returncode, cwd)) > >> > InstallationError: Command "python setup.py egg_info" failed with > error code 1 in /tmp/pip-req-build-eMwGZT/ > >> > Error: installing with pip2 failed > >> > > ******************************************************************************** > > > >> > Error installing cypari-2.1.1 > >> > > ******************************************************************************** > > > >> > > >> > real 0m1.313s > >> > user 0m1.084s > >> > sys 0m0.176s > >> > > ************************************************************************ > >> > Error installing package cypari-2.1.1 > >> > > ************************************************************************ > >> > Please email sage-devel (http://groups.google.com/group/sage-devel) > >> > explaining the problem and including the log file > >> > /srv/public/shared/sage/logs/pkgs/cypari-2.1.1.log > >> > Describe your computer, operating system, etc. > >> > If you want to try to fix the problem yourself, *don't* just cd to > >> > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1 and > type 'make' or whatever is appropriate. > >> > Instead, the following commands setup all environment variables > >> > correctly and load a subshell for you to debug the error: > >> > (cd '/srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1' > && '/srv/public/shared/sage/sage' --sh) > >> > When you are done debugging, you can type "exit" to leave the > subshell. > >> > > ************************************************************************ > >> > > >> > > >> > On Tuesday, September 3, 2019 at 1:22:40 AM UTC+2, Volker Braun > wrote: > >> >> > >> >> As always, you can get the latest beta version from the "develop" > git branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > >> >> > >> >> > >> >> bdf4b23d74 (trac/develop, tag: 8.9.beta9) Updated SageMath version > to 8.9.beta9 > >> >> c631202c12 Trac #28411: refresh the prompt in the installation guide > >> >> 45482b13f0 Trac #28387: Implement function that returns the balanced > digit representation of an integer > >> >> 4454ffec0d Trac #28384: py2: UnicodeDecodeError in doctest framework > exception handling > >> >> 0c8192c3de Trac #28366: Lattice precision timing test fails on > Windows 7 due to low-ish clock resolution > >> >> 5e1b351a89 Trac #28274: EnumeratedFamily should use integers as keys > >> >> ec9715bb88 Trac #28172: Profile of a Finite Permutation Group > >> >> dcf58df8b5 Trac #28154: SciPy: patch for missing coding lines in > some source files > >> >> 82d75fd335 Trac #27917: Standardize doctest headers > >> >> 04d5aab185 Trac #25817: RuntimeError: Encountered operator mismatch > in maxima-to-sr translation, integrate > >> >> 45314bcbcf Trac #23639: Strange errors with roots() of polynomials > over polynomial rings > >> >> f29cee985f Trac #28419: new pyflakes miscellanous cleanup > >> >> 77bddf472a Trac #28417: removed deprecated stuff in integer_mod > >> >> c565a3aa0a Trac #28412: upgrade Pynac to 0.7.26 > >> >> 2e47b34ab8 Trac #28408: fixing a few invalid escape sequences > >> >> 877d26294b Trac #28407: py3: fix quantum_group_gap and graph_latex > >> >> 3db8be3dc0 Trac #28399: remove deprecated things in integer.pyx > >> >> 6a837c5ea6 Trac #27818: Meet-subsemilattice for lattices > >> >> 2920f66a0e Trac #27798: Add `backend` option to associahedron and > flow polytope > >> >> 98f3199887 Trac #27587: Follow up to #25680: Fix tempfile handling > in doctests > >> >> 0719be21c2 Trac #27473: Matrix inversion fails over a Laurent series > ring > >> >> 842a3dcd41 Trac #27444: Expose multithreaded fflas-ffpack features > >> >> cee95e6b38 Trac #28404: Sign of hypergeometric motives is sometimes > wrong > >> >> af8bf5ead8 Trac #28400: fixing a few roles > >> >> 1cdf4955c6 Trac #28398: _richcmp_ for quaternion algebra elements > >> >> abb2397287 Trac #28397: fix some wrong doctests that were not run > >> >> 2465a9e494 Trac #28396: faster Möbius matrix for Hasse diagrams > >> >> 4b4b5bf81b Trac #28395: Bug in is_weil_polynomial > >> >> 77466c5716 Trac #28393: add self-tests for polymake > >> >> a7f0a353e5 Trac #28391: dependencies file for jupymake > >> >> e7a3ec0d98 Trac #28377: polymake interface broken with > "non-standard" quadratic fields > >> >> a535670711 Trac #28339: Random failure in > src/sage/interfaces/expect.py > >> >> f34f77e4da Trac #28271: Implement LexM traversal > >> >> 304feb1626 Trac #28229: Generalized shifted prime tableau > >> >> e570374675 Trac #27689: Implement is_pyramid, is_bipyramid, is_prism > for polytopes > >> >> addde7bcc7 Trac #28380: bump up the version of givaro in > spkg-configure.m4 > >> >> 8f1c30f031 Trac #28403: py3: crypto/block_cipher/present.py doctest > failures > >> >> 0ae7ffa669 Trac #25727: Prevent giac from giving localized output > >> >> 109c1bd6c1 Trac #28060: Extensions of finite fields embeddings: we > have inverse image but `inverse_image` throws `NotImplemented` > >> >> 0c5c45c0cf Trac #27937: Fix for functorial construction of monoid > algebras > >> >> fee35bf412 Trac #27851: Convert sqrt(D) to UCF > >> >> 3b7ef2c62c Trac #27831: Small fix for is_symmetric for matrices over > CDF > >> >> 8f76f4d242 Trac #27760: Generalized Permutohedra and type H4 > 4-uniform polytopes > >> >> 67de66d92d Trac #27096: Bug in Buchberger algorithm over Tate > algebra > >> >> 6b8839d39f Trac #25823: maxima segfaults on integral computation > >> >> 4583b4056e (tag: 8.9.beta8, trac/develop) Updated SageMath version > to 8.9.beta8 > >> >> > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-r...@googlegroups.com. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/78651b01-df14-4f2f-826c-d7de01833101%40googlegroups.com. > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com <javascript:>. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/71e7386e-a8bf-4a26-b446-706c65f0a91a%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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