[R-SIG-Mac] last successful build of R-devel?

2011-07-11 Thread Vincent Carey
is there a location where the last successful build of R-devel binary for
macosx can be retrieved?  the build for jul 11 is noted as failed at
r.research.att.com

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Re: [R-SIG-Mac] gfortran, tclck and /usr/local

2011-07-11 Thread Simon Urbanek

On Jul 11, 2011, at 12:05 PM, Federico Calboli wrote:

 Hi,
 
 can I ask if anyone can tell me which of these files belongs to the Gfortran 
 and tcltk R Mac tools instalation please:
 

I suppose you mean GNU Fortran - but which one? The recent ones live along 
Xcode so the answer would be none. If you have the older, separate Fortran then 
it has an uninstaller script that lists all files - it should be in 
/usr/local/bin/gfortran-uninstall or you can consult pkgutils (see below).

As for tcltk, this is the list of its files in /usr/local/lib:
Tktable2.9
libtcl8.5.dylib
libtclstub8.5.a
libtk8.5.dylib
libtkstub8.5.a
tcl8
tcl8.5
tclConfig.sh
tk8.5
tkConfig.sh

But in either case, you can check installed files very easily using pkgutil - 
it is very powerful and can tell you which files are installed by whom and vice 
versa.
For example:

Fino:~$ pkgutil --file-info /usr/local/lib/tclConfig.sh 
volume: /
path: /usr/local/lib/tclConfig.sh

pkgid: org.r-project.other.tcltk.x11
pkg-version: 8.5.5
install-time: 1224629182
uid: 0
gid: 0
mode: 644

Fino:~$ pkgutil --files org.r-project.other.tcltk.x11
usr
usr/local
usr/local/bin
usr/local/bin/tclsh8.5
usr/local/bin/wish8.5
usr/local/include
usr/local/include/tcl.h
usr/local/include/tclDecls.h
usr/local/include/tclPlatDecls.h
usr/local/include/tclTomMath.h
usr/local/include/tclTomMathDecls.h
usr/local/include/tk.h
[...]


Fino:~$ pkgutil --files org.r-project.mac.tools.gfortran
usr
usr/local
usr/local/bin
usr/local/bin/gfortran
usr/local/bin/gfortran-4.0
usr/local/bin/gfortran-4.2
usr/local/bin/gfortran-uninstall
usr/local/bin/i686-apple-darwin8-gfortran-4.2
usr/local/bin/powerpc-apple-darwin8-gfortran-4.2


Cheers,
Simon




 :~$ ls -l /usr/local/lib
 total 205784
 drwxr-xr-x   4 root  wheel   136 15 Dec  2009 ImageMagick-6.5.8
 drwxr-xr-x   4 root  wheel   136 17 Apr  2010 ImageMagick-6.6.1
 drwxr-xr-x   8 root  wheel   272 14 Apr 13:16 Tktable2.9
 drwxr-xr-x   4 root  wheel   136 21 Apr  2008 gcc
 -rw-rw-r--   1 root  wheel736903 24 Feb  2008 libgcc_s.1.dylib
 -rw-rw-r--   1 root  wheel 33144 24 Feb  2008 libgcc_s.10.4.dylib
 -rw-rw-r--   1 root  wheel 33508 24 Feb  2008 libgcc_s.10.5.dylib
 lrwxr-xr-x   1 root  wheel16 14 Apr 13:15 libgcc_s_ppc64.1.dylib - 
 libgcc_s.1.dylib
 lrwxr-xr-x   1 root  wheel16 14 Apr 13:15 libgcc_s_x86_64.1.dylib - 
 libgcc_s.1.dylib
 -rwxrwxr-x   1 root  wheel   8094839 24 Feb  2008 libgfortran.2.0.0.dylib
 lrwxr-xr-x   1 root  wheel23 14 Apr 13:15 libgfortran.2.dylib - 
 libgfortran.2.0.0.dylib
 -rw-rw-r--   1 root  wheel  13836364 24 Feb  2008 libgfortran.a
 lrwxr-xr-x   1 root  wheel23 14 Apr 13:15 libgfortran.dylib - 
 libgfortran.2.0.0.dylib
 -rwxrwxr-x   1 root  wheel   779 24 Feb  2008 libgfortran.la
 -rwxr-xr-x   1 root  wheel  27914344  4 Feb  2009 libgs.8.64.dylib
 lrwxr-xr-x   1 root  wheel16 18 Mar  2010 libgs.8.dylib - 
 libgs.8.64.dylib
 lrwxr-xr-x   1 root  wheel31 18 Mar  2010 libgs.dylib - 
 /usr/local/lib/libgs.8.64.dylib
 -rw-r--r--   1 root  wheel  38619488 29 Sep  2009 libgsl.a
 -rwxr-xr-x   1 root  wheel   871 29 Sep  2009 libgsl.la
 -rw-r--r--   1 root  wheel   5569888 29 Sep  2009 libgslcblas.a
 -rwxr-xr-x   1 root  wheel   884 29 Sep  2009 libgslcblas.la
 -r-xr-xr-x   1 root  wheel   4820229 21 Oct  2008 libtcl8.5.dylib
 -rw-r--r--   1 root  wheel 11072 21 Oct  2008 libtclstub8.5.a
 -rwxr-xr-x   1 root  wheel   5602072 21 Oct  2008 libtk8.5.dylib
 -rw-r--r--   1 root  wheel 14304 21 Oct  2008 libtkstub8.5.a
 drwxrwxr-x   3 root  staff   102 29 Sep  2009 pkgconfig
 drwxrwxr-x   6 root  wheel   204 14 Apr 13:15 ppc64
 drwxr-xr-x   5 root  wheel   170 14 Apr 13:16 tcl8
 drwxr-xr-x  18 root  wheel   612 14 Apr 13:16 tcl8.5
 -rw-r--r--   1 root  wheel  7730 21 Oct  2008 tclConfig.sh
 drwxr-xr-x  37 root  wheel  1258 14 Apr 13:16 tk8.5
 -rw-r--r--   1 root  wheel  4017 21 Oct  2008 tkConfig.sh
 drwxrwxr-x   6 root  wheel   204 14 Apr 13:15 x86_64
 
 
 I would imagine that the two ImageMagick have nothing to do with R, and 
 Tktable might also be unrelated. I am trying to see if any of these 
 files/directoris can be removed, to avoid conflicts with homebrew.
 
 Bw
 
 F
 
 
 
 --
 Federico C. F. Calboli
 Department of Epidemiology and Biostatistics
 Imperial College, St. Mary's Campus
 Norfolk Place, London W2 1PG
 
 Tel +44 (0)20 75941602   Fax +44 (0)20 75943193
 
 f.calboli [.a.t] imperial.ac.uk
 f.calboli [.a.t] gmail.com
 
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Re: [R-SIG-Mac] last successful build of R-devel?

2011-07-11 Thread Simon Urbanek

On Jul 11, 2011, at 12:29 PM, Simon Urbanek wrote:

 
 On Jul 11, 2011, at 12:16 PM, Vincent Carey wrote:
 
 is there a location where the last successful build of R-devel binary for 
 macosx can be retrieved?
 
 http://r.research.att.com/R-devel-leopard.pkg
 

Oops - that seems to be wrong due to R-devel failing checks  - so you'll have 
to wait till tomorrow - I think the issue in R-devel has been fixed in the 
meantime.

 
 the build for jul 11 is noted as failed at r.research.att.com
 
 
 Yes, R-devel failed checks last night.
 
 Cheers,
 Simon
 

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Re: [R-SIG-Mac] gfortran, tclck and /usr/local

2011-07-11 Thread Federico Calboli

On 11 Jul 2011, at 17:27, Simon Urbanek wrote:

 
 On Jul 11, 2011, at 12:05 PM, Federico Calboli wrote:
 
 Hi,
 
 can I ask if anyone can tell me which of these files belongs to the Gfortran 
 and tcltk R Mac tools instalation please:
 
 
 I suppose you mean GNU Fortran - but which one? The recent ones live along 
 Xcode so the answer would be none. If you have the older, separate Fortran 
 then it has an uninstaller script that lists all files - it should be in 
 /usr/local/bin/gfortran-uninstall or you can consult pkgutils (see below).

I mean this one:

http://mirrors.dotsrc.org/cran/bin/macosx/tools/

Is this still needed or does the XCode fortran completely replace it?

 But in either case, you can check installed files very easily using pkgutil - 
 it is very powerful and can tell you which files are installed by whom and 
 vice versa.
 For example:
 
 Fino:~$ pkgutil --file-info /usr/local/lib/tclConfig.sh 
 volume: /
 path: /usr/local/lib/tclConfig.sh

$ pkgutil --file-info /usr/local/lib/tclConfig.sh 
volume: /
path: /usr/local/lib/tclConfig.sh

is all I get, possibly because my Mac is a 'time machine' installation of an 
older machine. Similarly:

$ pkgutil --files org.r-project.other.tcltk.x11
No receipt for 'org.r-project.other.tcltk.x11' found at '/'.

$ pkgutil --files org.r-project.other.tcltk.x11
No receipt for 'org.r-project.other.tcltk.x11' found at '/'.

Would it be reasonable to 

1) uninstall gfortran
2) rm -rf /usr/local/lib
3) reinstall from http://mirrors.dotsrc.org/cran/bin/macosx/tools/ both 
gfortran (if needed) and tcltk and see what happens?

bw

F




--
Federico C. F. Calboli
Department of Epidemiology and Biostatistics
Imperial College, St. Mary's Campus
Norfolk Place, London W2 1PG

Tel +44 (0)20 75941602   Fax +44 (0)20 75943193

f.calboli [.a.t] imperial.ac.uk
f.calboli [.a.t] gmail.com

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