Re: [R-SIG-Mac] Rcmdr

[Sabrina Droussy]

Hello ! 

Many thanks for your answers. I found a way to open Rcmdr maybe it can help if 
someone has an issue with that. I had to open R with the Xquartz’s terminal 
it’s weird because it wasn’t like that some months ago … 

Thanks again 

Sabrina

> Le 1 août 2023 à 01:27, John Fox  a écrit :
> 
> Hello Simon,
> 
> Actually the Rcmdr *does* import (and use) the tcltk2 package, but I've had 
> no other report of this kind of problem and haven't observed it myself.
> 
> Best,
> John
> 
> -- 
> John Fox, Professor Emeritus
> McMaster University
> Hamilton, Ontario, Canada
> web: https://www.john-fox.ca/
> 
> On 2023-07-31 6:46 p.m., Simon Urbanek wrote:
>> Caution: External email.
>> Agreed, no problem here even with Rcmdr in older R 4.2.0. As Peter said, 
>> Rcmdr doesn't use tcltk2 so I'm sure there is a lot you're omitting here. If 
>> it doubt, make sure you don't load some old workspace and have the latest 
>> versions of all packages, e.g. via update.packages(ask=FALSE).
>> Cheers,
>> Simon
>>> On 1/08/2023, at 1:18 AM, peter dalgaard  wrote:
>>> 
>>> Hum.. Not happening here with 4.3.1 from CRAN. Why are you getting errors 
>>> relating to 4.2? Also puzzling is library/tcltk2, which I don't seem to 
>>> have (only tcltk).
>>> 
>>> A hunch is that the tcltk2 package could be involved, but even installing 
>>> that, I don't see a directory of that name under R.framework.
>>> 
>>> - pd
>>> 
 On 22 Jul 2023, at 14:20 , Sabrina Droussy  
 wrote:
 
 
> 
> Hello,
> I have a big problem with R. I hope you can help me please.
> I didn’t use R for some months and wanted to use it again to prepare an 
> exam. I can’t open Rcmdr anymore. I tried several things : install 
> packages, delete and reinstall R. It isn’t working.
> 
> Here is the message I get :
> error reading package index file / Library/ Frameworks / R. Framework/ 
> Versions/ 4.2/ Resources/ 
> library/tcltk2/tklibs/ttktheme_radiance/pkgIndex.tcl: can’t find package 
> tile
> error reading package index file / Library/ Frameworks / R. Framework/ 
> Versions/ 4.2/ Resources/ 
> library/tcltk2/tklibs/ttktheme_clearlooks/pkgIndex.tcl: too many nested 
> evaluations (infinite loop ? )
> 
> Best regards
> 
> Envoyé de mon iPhone
 
 ___
 R-SIG-Mac mailing list
 R-SIG-Mac@r-project.org
 https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>> 
>>> --
>>> Peter Dalgaard, Professor,
>>> Center for Statistics, Copenhagen Business School
>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>>> Phone: (+45)38153501
>>> Office: A 4.23
>>> Email: pd@cbs.dk  Priv: pda...@gmail.com
>>> 
>>> ___
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>>> R-SIG-Mac@r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>> 
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Re: [R-SIG-Mac] Rcmdr

[Prof Brian Ripley]

On 01/08/2023 00:27, John Fox wrote:

Hello Simon,

Actually the Rcmdr *does* import (and use) the tcltk2 package, but I've 
had no other report of this kind of problem and haven't observed it myself.


Best,
  John


A possible clue.  tclrk2 on Linux used to do something very similar 
(including the infinite loop) if the X server had died but the DISPLAY 
variable was set.


So I would investigate the XQuartz installation, maybe starting with a 
precautionary re-install of the latest non-beta version (currently 
2.8.5).  Then check package tcltk works correctly.


--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford

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Re: [R-SIG-Mac] Rcmdr

[John Fox]

Hello Simon,

Actually the Rcmdr *does* import (and use) the tcltk2 package, but I've 
had no other report of this kind of problem and haven't observed it myself.


Best,
 John

--
John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
web: https://www.john-fox.ca/

On 2023-07-31 6:46 p.m., Simon Urbanek wrote:

Caution: External email.


Agreed, no problem here even with Rcmdr in older R 4.2.0. As Peter said, Rcmdr 
doesn't use tcltk2 so I'm sure there is a lot you're omitting here. If it 
doubt, make sure you don't load some old workspace and have the latest versions 
of all packages, e.g. via update.packages(ask=FALSE).

Cheers,
Simon




On 1/08/2023, at 1:18 AM, peter dalgaard  wrote:

Hum.. Not happening here with 4.3.1 from CRAN. Why are you getting errors 
relating to 4.2? Also puzzling is library/tcltk2, which I don't seem to have 
(only tcltk).

A hunch is that the tcltk2 package could be involved, but even installing that, 
I don't see a directory of that name under R.framework.

- pd


On 22 Jul 2023, at 14:20 , Sabrina Droussy  wrote:




Hello,
I have a big problem with R. I hope you can help me please.
I didn’t use R for some months and wanted to use it again to prepare an exam. I 
can’t open Rcmdr anymore. I tried several things : install packages, delete and 
reinstall R. It isn’t working.

Here is the message I get :
error reading package index file / Library/ Frameworks / R. Framework/ 
Versions/ 4.2/ Resources/ library/tcltk2/tklibs/ttktheme_radiance/pkgIndex.tcl: 
can’t find package tile
error reading package index file / Library/ Frameworks / R. Framework/ 
Versions/ 4.2/ Resources/ 
library/tcltk2/tklibs/ttktheme_clearlooks/pkgIndex.tcl: too many nested 
evaluations (infinite loop ? )

Best regards

Envoyé de mon iPhone


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--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd@cbs.dk  Priv: pda...@gmail.com

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Re: [R-SIG-Mac] Rcmdr

[Simon Urbanek]

Agreed, no problem here even with Rcmdr in older R 4.2.0. As Peter said, Rcmdr 
doesn't use tcltk2 so I'm sure there is a lot you're omitting here. If it 
doubt, make sure you don't load some old workspace and have the latest versions 
of all packages, e.g. via update.packages(ask=FALSE).

Cheers,
Simon



> On 1/08/2023, at 1:18 AM, peter dalgaard  wrote:
> 
> Hum.. Not happening here with 4.3.1 from CRAN. Why are you getting errors 
> relating to 4.2? Also puzzling is library/tcltk2, which I don't seem to have 
> (only tcltk). 
> 
> A hunch is that the tcltk2 package could be involved, but even installing 
> that, I don't see a directory of that name under R.framework.
> 
> - pd
> 
>> On 22 Jul 2023, at 14:20 , Sabrina Droussy  wrote:
>> 
>> 
>>> 
>>> Hello,
>>> I have a big problem with R. I hope you can help me please.
>>> I didn’t use R for some months and wanted to use it again to prepare an 
>>> exam. I can’t open Rcmdr anymore. I tried several things : install 
>>> packages, delete and reinstall R. It isn’t working.
>>> 
>>> Here is the message I get :
>>> error reading package index file / Library/ Frameworks / R. Framework/ 
>>> Versions/ 4.2/ Resources/ 
>>> library/tcltk2/tklibs/ttktheme_radiance/pkgIndex.tcl: can’t find package 
>>> tile
>>> error reading package index file / Library/ Frameworks / R. Framework/ 
>>> Versions/ 4.2/ Resources/ 
>>> library/tcltk2/tklibs/ttktheme_clearlooks/pkgIndex.tcl: too many nested 
>>> evaluations (infinite loop ? )  
>>> 
>>> Best regards 
>>> 
>>> Envoyé de mon iPhone
>> 
>> ___
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>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 
> -- 
> Peter Dalgaard, Professor,
> Center for Statistics, Copenhagen Business School
> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> Phone: (+45)38153501
> Office: A 4.23
> Email: pd@cbs.dk  Priv: pda...@gmail.com
> 
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Re: [R-SIG-Mac] Rcmdr

[peter dalgaard]

Hum.. Not happening here with 4.3.1 from CRAN. Why are you getting errors 
relating to 4.2? Also puzzling is library/tcltk2, which I don't seem to have 
(only tcltk). 

A hunch is that the tcltk2 package could be involved, but even installing that, 
I don't see a directory of that name under R.framework.

- pd

> On 22 Jul 2023, at 14:20 , Sabrina Droussy  wrote:
> 
> 
>> 
>> Hello,
>> I have a big problem with R. I hope you can help me please.
>> I didn’t use R for some months and wanted to use it again to prepare an 
>> exam. I can’t open Rcmdr anymore. I tried several things : install packages, 
>> delete and reinstall R. It isn’t working.
>> 
>> Here is the message I get :
>> error reading package index file / Library/ Frameworks / R. Framework/ 
>> Versions/ 4.2/ Resources/ 
>> library/tcltk2/tklibs/ttktheme_radiance/pkgIndex.tcl: can’t find package tile
>> error reading package index file / Library/ Frameworks / R. Framework/ 
>> Versions/ 4.2/ Resources/ 
>> library/tcltk2/tklibs/ttktheme_clearlooks/pkgIndex.tcl: too many nested 
>> evaluations (infinite loop ? )  
>> 
>> Best regards 
>> 
>> Envoyé de mon iPhone
> 
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-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd@cbs.dk  Priv: pda...@gmail.com

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Re: [R-SIG-Mac] Rcmdr start-up issue

[Robert Baer]

> On Oct 4, 2017, at 10:26 AM, Fox, John <j...@mcmaster.ca> wrote:
> 
> Dear Robert,
> 
> If I understand you correctly, you had to agree to the Xcode license in order 
> to get the tcltk and Rcmdr packages to work. That wasn't my experience. Is it 
> possible that you did something else, like rebooting your computer after 
> installing XQuartz?
> 
> The reason I ask is that I want to understand what went wrong in case someone 
> else has a similar problem in future.
> 
> Best,
> John

Unfortunately, I can’t remember the details very clearly.  My memory is that I 
chose the XQuartz link from the CRAN page and installed, but I don’t remember 
if I rebooted for sure.  It is possible that I did not.  I also do not 
specifically remember if I did a license agreement step although I imagine I 
did.  

 I have done some cookbook homebrew and pip incantations on this machine that I 
suppose could contribute to a “my fault” situation here.  

Thanks again for your help and I’ll be eves dropping on this list going forward 
to see if it is newbie  (lack of) skills that was my downfall or something more 
real.

Rob

> 
>> -Original Message-
>> From: Robert Baer [mailto:rb...@atsu.edu]
>> Sent: Wednesday, October 4, 2017 10:09 AM
>> To: Fox, John <j...@mcmaster.ca>
>> Cc: r-sig-mac@r-project.org
>> Subject: Re: [R-SIG-Mac] Rcmdr start-up issue
>> 
>> Thanks so much for taking the time to respond.   I followed the Xcode
>> instructions in your first paragraph and  instructions and everything is 
>> working
>> now as expected.  Not sure what happened before.  As of last year, more that
>> half my students now live in the Mac world, so it seems I need to up my skill
>> level.
>> 
>> Enjoyed the little tcltk exercise/test you supplied.Thanks again.
>> 
>> Sincerely,
>> 
>> Rob
>> 
>> 
>> On 10/3/2017 7:35 PM, Fox, John wrote:
>>> Dear Robert,
>>> 
>>> As a brief addendum to my previous message, I’ve now installed the
>>> newest version of Xcode, and I still have no trouble using the Rcmdr 
>>> package.
>>> 
>>> I did get the following message when I initially loaded the Rcmdr package:
>>> “Agreeing to the Xcode/iOS license requires admin privileges, please
>>> run “sudo xcodebuild -license” and then retry this command.” But the
>>> Rcmdr loaded properly both before *and* after I followed the
>>> instruction in the message.
>>> 
>>> Best,
>>>  John
>>> 
>>> -
>>> John Fox, Professor Emeritus
>>> McMaster University
>>> Hamilton, Ontario, Canada
>>> Web: http://socserv.mcmaster.ca/jfox/
>>> 
>>> 
>>> 
>>> 
>>> On 2017-10-03, 1:03 PM, "R-SIG-Mac on behalf of Fox, John"
>>> <r-sig-mac-boun...@r-project.org on behalf of j...@mcmaster.ca> wrote:
>>> 
>>>> Dear Robert,
>>>> 
>>>> The most common Rcmdr problem on macOS is failure to install XQuartz,
>>>> which is required by the tcltk package. If you haven't installed
>>>> XQuartz, then start there, and remember to reboot after the XQuartz
>> installation:
>>>> <https://www.xquartz.org/>. For more details, please see the Rcmdr
>>>> installation notes for macOS at
>>>> <http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes
>>>> .html
>>>>> . You should be able to use the Rcmdr from R.app, a terminal window,
>>>>> or RStudio.
>>>> On the other hand, if you *have* installed XQuartz and rebooted, and
>>>> the problem still occurs, then see whether you can load and use the
>>>> tcltk package directly, without the Rcmdr; try, e.g. (from
>>>> ?TkWidgets),
>>>> 
>>>>library(tcltk)
>>>>tt <- tktoplevel()
>>>>label.widget <- tklabel(tt, text = "Hello, World!")
>>>>button.widget <- tkbutton(tt, text = "Push",command =
>>>> function()cat("OW!\n"))
>>>>tkpack(label.widget, button.widget)
>>>> 
>>>> Finally, your setup is very similar to mine -- that is, I haven't yet
>>>> upgraded my Mac to R 3.4.2 (which I don't think is built yet for
>>>> macOS) but all my R packages are up-to-date. An exception is that I
>>>> haven't yet installed the latest version of Xcode, which I'll do now
>>>> to see what happens. It's unclear to me from your message whether the
>>>> Rcmdr

Re: [R-SIG-Mac] Rcmdr start-up issue

[Fox, John]

Dear Robert,

If I understand you correctly, you had to agree to the Xcode license in order 
to get the tcltk and Rcmdr packages to work. That wasn't my experience. Is it 
possible that you did something else, like rebooting your computer after 
installing XQuartz?

The reason I ask is that I want to understand what went wrong in case someone 
else has a similar problem in future.

Best,
 John

> -Original Message-
> From: Robert Baer [mailto:rb...@atsu.edu]
> Sent: Wednesday, October 4, 2017 10:09 AM
> To: Fox, John <j...@mcmaster.ca>
> Cc: r-sig-mac@r-project.org
> Subject: Re: [R-SIG-Mac] Rcmdr start-up issue
> 
> Thanks so much for taking the time to respond.   I followed the Xcode
> instructions in your first paragraph and  instructions and everything is 
> working
> now as expected.  Not sure what happened before.  As of last year, more that
> half my students now live in the Mac world, so it seems I need to up my skill
> level.
> 
> Enjoyed the little tcltk exercise/test you supplied.    Thanks again.
> 
> Sincerely,
> 
> Rob
> 
> 
> On 10/3/2017 7:35 PM, Fox, John wrote:
> > Dear Robert,
> >
> > As a brief addendum to my previous message, I’ve now installed the
> > newest version of Xcode, and I still have no trouble using the Rcmdr 
> > package.
> >
> > I did get the following message when I initially loaded the Rcmdr package:
> > “Agreeing to the Xcode/iOS license requires admin privileges, please
> > run “sudo xcodebuild -license” and then retry this command.” But the
> > Rcmdr loaded properly both before *and* after I followed the
> > instruction in the message.
> >
> > Best,
> >   John
> >
> > -
> > John Fox, Professor Emeritus
> > McMaster University
> > Hamilton, Ontario, Canada
> > Web: http://socserv.mcmaster.ca/jfox/
> >
> >
> >
> >
> > On 2017-10-03, 1:03 PM, "R-SIG-Mac on behalf of Fox, John"
> > <r-sig-mac-boun...@r-project.org on behalf of j...@mcmaster.ca> wrote:
> >
> >> Dear Robert,
> >>
> >> The most common Rcmdr problem on macOS is failure to install XQuartz,
> >> which is required by the tcltk package. If you haven't installed
> >> XQuartz, then start there, and remember to reboot after the XQuartz
> installation:
> >> <https://www.xquartz.org/>. For more details, please see the Rcmdr
> >> installation notes for macOS at
> >> <http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes
> >> .html
> >>> . You should be able to use the Rcmdr from R.app, a terminal window,
> >>> or RStudio.
> >> On the other hand, if you *have* installed XQuartz and rebooted, and
> >> the problem still occurs, then see whether you can load and use the
> >> tcltk package directly, without the Rcmdr; try, e.g. (from
> >> ?TkWidgets),
> >>
> >>library(tcltk)
> >>tt <- tktoplevel()
> >>label.widget <- tklabel(tt, text = "Hello, World!")
> >>button.widget <- tkbutton(tt, text = "Push",command =
> >> function()cat("OW!\n"))
> >>tkpack(label.widget, button.widget)
> >>
> >> Finally, your setup is very similar to mine -- that is, I haven't yet
> >> upgraded my Mac to R 3.4.2 (which I don't think is built yet for
> >> macOS) but all my R packages are up-to-date. An exception is that I
> >> haven't yet installed the latest version of Xcode, which I'll do now
> >> to see what happens. It's unclear to me from your message whether the
> >> Rcmdr package worked before you installed the newest Xcode.
> >>
> >> I hope this helps,
> >> John
> >>
> >> --
> >> John Fox, Professor Emeritus
> >> McMaster University
> >> Hamilton, Ontario, Canada
> >> Web: socserv.mcmaster.ca/jfox
> >>
> >>
> >>
> >>> -Original Message-
> >>> From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf
> >>> Of Robert Baer
> >>> Sent: Saturday, September 23, 2017 10:25 AM
> >>> To: r-sig-mac@r-project.org
> >>> Subject: [R-SIG-Mac] Rcmdr start-up issue
> >>>
> >>> I seem to be having a problem starting Rcmdr:
> >>>
> >>>> library(Rcmdr)
> >>> Loading required package: splines
> >>> Loading required package: RcmdrMisc
> >>> Loading required package: car
> >>> Loading requi

Re: [R-SIG-Mac] Rcmdr start-up issue

[Robert Baer]

Thanks so much for taking the time to respond.   I followed the Xcode 
instructions in your first paragraph and  instructions and everything is 
working now as expected.  Not sure what happened before.  As of last 
year, more that half my students now live in the Mac world, so it seems 
I need to up my skill level.


Enjoyed the little tcltk exercise/test you supplied.    Thanks again.

Sincerely,

Rob


On 10/3/2017 7:35 PM, Fox, John wrote:

Dear Robert,

As a brief addendum to my previous message, I’ve now installed the newest
version of Xcode, and I still have no trouble using the Rcmdr package.

I did get the following message when I initially loaded the Rcmdr package:
“Agreeing to the Xcode/iOS license requires admin privileges, please run
“sudo xcodebuild -license” and then retry this command.” But the Rcmdr
loaded properly both before *and* after I followed the instruction in the
message.

Best,
  John

-
John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
Web: http://socserv.mcmaster.ca/jfox/




On 2017-10-03, 1:03 PM, "R-SIG-Mac on behalf of Fox, John"
<r-sig-mac-boun...@r-project.org on behalf of j...@mcmaster.ca> wrote:


Dear Robert,

The most common Rcmdr problem on macOS is failure to install XQuartz,
which is required by the tcltk package. If you haven't installed XQuartz,
then start there, and remember to reboot after the XQuartz installation:
<https://www.xquartz.org/>. For more details, please see the Rcmdr
installation notes for macOS at
<http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html

. You should be able to use the Rcmdr from R.app, a terminal window, or
RStudio.

On the other hand, if you *have* installed XQuartz and rebooted, and the
problem still occurs, then see whether you can load and use the tcltk
package directly, without the Rcmdr; try, e.g. (from ?TkWidgets),

library(tcltk)
tt <- tktoplevel()
label.widget <- tklabel(tt, text = "Hello, World!")
button.widget <- tkbutton(tt, text = "Push",command =
function()cat("OW!\n"))
tkpack(label.widget, button.widget)

Finally, your setup is very similar to mine -- that is, I haven't yet
upgraded my Mac to R 3.4.2 (which I don't think is built yet for macOS)
but all my R packages are up-to-date. An exception is that I haven't yet
installed the latest version of Xcode, which I'll do now to see what
happens. It's unclear to me from your message whether the Rcmdr package
worked before you installed the newest Xcode.

I hope this helps,
John

--
John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
Web: socserv.mcmaster.ca/jfox




-Original Message-
From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of
Robert Baer
Sent: Saturday, September 23, 2017 10:25 AM
To: r-sig-mac@r-project.org
Subject: [R-SIG-Mac] Rcmdr start-up issue

I seem to be having a problem starting Rcmdr:


library(Rcmdr)

Loading required package: splines
Loading required package: RcmdrMisc
Loading required package: car
Loading required package: sandwich
Loading required package: effects
Loading required package: carData

Attaching package: ‘carData’

The following objects are masked from ‘package:car’:

 Guyer, UN, Vocab

lattice theme set by effectsTheme()
See ?effectsTheme for details.
Error: package or namespace load failed for ‘Rcmdr’:
  package ‘tcltk’ does not have a namespace
I tried first from within RStudio, then from R itself. Same outcome.
Reinstalling Rcmdr, tcltk or tcltk2 package did not seem to help.

I’m brand new to mac, so I may be missing something basic.  On the other
hand I should confess to just having just “updated” Xcode.


R.Version()

$platform
[1] "x86_64-apple-darwin15.6.0"

$arch
[1] "x86_64"

$os
[1] "darwin15.6.0"

$system
[1] "x86_64, darwin15.6.0"

$status
[1] ""

$major
[1] "3"

$minor
[1] "4.1"

$year
[1] "2017"

$month
[1] "06"

$day
[1] "30"

$`svn rev`
[1] "72865"

$language
[1] "R"

$version.string
[1] "R version 3.4.1 (2017-06-30)"

$nickname
[1] "Single Candle"


[[alternative HTML version deleted]]

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--


--
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Professor of Physiology
Kirksville College of Osteopathic Medicine
A T Still University of Health Sciences
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Re: [R-SIG-Mac] Rcmdr start-up issue

[Fox, John]

Dear Robert,

As a brief addendum to my previous message, I’ve now installed the newest
version of Xcode, and I still have no trouble using the Rcmdr package.

I did get the following message when I initially loaded the Rcmdr package:
“Agreeing to the Xcode/iOS license requires admin privileges, please run
“sudo xcodebuild -license” and then retry this command.” But the Rcmdr
loaded properly both before *and* after I followed the instruction in the
message.

Best,
 John

-
John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
Web: http://socserv.mcmaster.ca/jfox/




On 2017-10-03, 1:03 PM, "R-SIG-Mac on behalf of Fox, John"
<r-sig-mac-boun...@r-project.org on behalf of j...@mcmaster.ca> wrote:

>Dear Robert,
>
>The most common Rcmdr problem on macOS is failure to install XQuartz,
>which is required by the tcltk package. If you haven't installed XQuartz,
>then start there, and remember to reboot after the XQuartz installation:
><https://www.xquartz.org/>. For more details, please see the Rcmdr
>installation notes for macOS at
><http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html
>>. You should be able to use the Rcmdr from R.app, a terminal window, or
>>RStudio.
>
>On the other hand, if you *have* installed XQuartz and rebooted, and the
>problem still occurs, then see whether you can load and use the tcltk
>package directly, without the Rcmdr; try, e.g. (from ?TkWidgets),
>
>   library(tcltk)
>   tt <- tktoplevel()
>   label.widget <- tklabel(tt, text = "Hello, World!")
>   button.widget <- tkbutton(tt, text = "Push",command =
>function()cat("OW!\n"))
>   tkpack(label.widget, button.widget)
>
>Finally, your setup is very similar to mine -- that is, I haven't yet
>upgraded my Mac to R 3.4.2 (which I don't think is built yet for macOS)
>but all my R packages are up-to-date. An exception is that I haven't yet
>installed the latest version of Xcode, which I'll do now to see what
>happens. It's unclear to me from your message whether the Rcmdr package
>worked before you installed the newest Xcode.
>
>I hope this helps,
> John
>
>--
>John Fox, Professor Emeritus
>McMaster University
>Hamilton, Ontario, Canada
>Web: socserv.mcmaster.ca/jfox
>
>
>
>> -Original Message-
>> From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of
>> Robert Baer
>> Sent: Saturday, September 23, 2017 10:25 AM
>> To: r-sig-mac@r-project.org
>> Subject: [R-SIG-Mac] Rcmdr start-up issue
>> 
>> I seem to be having a problem starting Rcmdr:
>> 
>> > library(Rcmdr)
>> Loading required package: splines
>> Loading required package: RcmdrMisc
>> Loading required package: car
>> Loading required package: sandwich
>> Loading required package: effects
>> Loading required package: carData
>> 
>> Attaching package: ‘carData’
>> 
>> The following objects are masked from ‘package:car’:
>> 
>> Guyer, UN, Vocab
>> 
>> lattice theme set by effectsTheme()
>> See ?effectsTheme for details.
>> Error: package or namespace load failed for ‘Rcmdr’:
>>  package ‘tcltk’ does not have a namespace
>> >
>> 
>> I tried first from within RStudio, then from R itself. Same outcome.
>> Reinstalling Rcmdr, tcltk or tcltk2 package did not seem to help.
>> 
>> I’m brand new to mac, so I may be missing something basic.  On the other
>> hand I should confess to just having just “updated” Xcode.
>> 
>> > R.Version()
>> $platform
>> [1] "x86_64-apple-darwin15.6.0"
>> 
>> $arch
>> [1] "x86_64"
>> 
>> $os
>> [1] "darwin15.6.0"
>> 
>> $system
>> [1] "x86_64, darwin15.6.0"
>> 
>> $status
>> [1] ""
>> 
>> $major
>> [1] "3"
>> 
>> $minor
>> [1] "4.1"
>> 
>> $year
>> [1] "2017"
>> 
>> $month
>> [1] "06"
>> 
>> $day
>> [1] "30"
>> 
>> $`svn rev`
>> [1] "72865"
>> 
>> $language
>> [1] "R"
>> 
>> $version.string
>> [1] "R version 3.4.1 (2017-06-30)"
>> 
>> $nickname
>> [1] "Single Candle"
>> 
>> 
>>  [[alternative HTML version deleted]]
>> 
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Re: [R-SIG-Mac] Rcmdr start-up issue

[Fox, John]

Dear Robert,

The most common Rcmdr problem on macOS is failure to install XQuartz, which is 
required by the tcltk package. If you haven't installed XQuartz, then start 
there, and remember to reboot after the XQuartz installation: 
<https://www.xquartz.org/>. For more details, please see the Rcmdr installation 
notes for macOS at 
<http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html>. 
You should be able to use the Rcmdr from R.app, a terminal window, or RStudio.

On the other hand, if you *have* installed XQuartz and rebooted, and the 
problem still occurs, then see whether you can load and use the tcltk package 
directly, without the Rcmdr; try, e.g. (from ?TkWidgets),

library(tcltk)
tt <- tktoplevel()
label.widget <- tklabel(tt, text = "Hello, World!")
button.widget <- tkbutton(tt, text = "Push",command = 
function()cat("OW!\n"))
tkpack(label.widget, button.widget)

Finally, your setup is very similar to mine -- that is, I haven't yet upgraded 
my Mac to R 3.4.2 (which I don't think is built yet for macOS) but all my R 
packages are up-to-date. An exception is that I haven't yet installed the 
latest version of Xcode, which I'll do now to see what happens. It's unclear to 
me from your message whether the Rcmdr package worked before you installed the 
newest Xcode.

I hope this helps,
 John

--
John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
Web: socserv.mcmaster.ca/jfox



> -Original Message-
> From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of
> Robert Baer
> Sent: Saturday, September 23, 2017 10:25 AM
> To: r-sig-mac@r-project.org
> Subject: [R-SIG-Mac] Rcmdr start-up issue
> 
> I seem to be having a problem starting Rcmdr:
> 
> > library(Rcmdr)
> Loading required package: splines
> Loading required package: RcmdrMisc
> Loading required package: car
> Loading required package: sandwich
> Loading required package: effects
> Loading required package: carData
> 
> Attaching package: ‘carData’
> 
> The following objects are masked from ‘package:car’:
> 
> Guyer, UN, Vocab
> 
> lattice theme set by effectsTheme()
> See ?effectsTheme for details.
> Error: package or namespace load failed for ‘Rcmdr’:
>  package ‘tcltk’ does not have a namespace
> >
> 
> I tried first from within RStudio, then from R itself. Same outcome.
> Reinstalling Rcmdr, tcltk or tcltk2 package did not seem to help.
> 
> I’m brand new to mac, so I may be missing something basic.  On the other
> hand I should confess to just having just “updated” Xcode.
> 
> > R.Version()
> $platform
> [1] "x86_64-apple-darwin15.6.0"
> 
> $arch
> [1] "x86_64"
> 
> $os
> [1] "darwin15.6.0"
> 
> $system
> [1] "x86_64, darwin15.6.0"
> 
> $status
> [1] ""
> 
> $major
> [1] "3"
> 
> $minor
> [1] "4.1"
> 
> $year
> [1] "2017"
> 
> $month
> [1] "06"
> 
> $day
> [1] "30"
> 
> $`svn rev`
> [1] "72865"
> 
> $language
> [1] "R"
> 
> $version.string
> [1] "R version 3.4.1 (2017-06-30)"
> 
> $nickname
> [1] "Single Candle"
> 
> 
>   [[alternative HTML version deleted]]
> 
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[R-SIG-Mac] Rcmdr start-up issue

[Robert Baer]

I seem to be having a problem starting Rcmdr:

> library(Rcmdr)
Loading required package: splines
Loading required package: RcmdrMisc
Loading required package: car
Loading required package: sandwich
Loading required package: effects
Loading required package: carData

Attaching package: ‘carData’

The following objects are masked from ‘package:car’:

Guyer, UN, Vocab

lattice theme set by effectsTheme()
See ?effectsTheme for details.
Error: package or namespace load failed for ‘Rcmdr’:
 package ‘tcltk’ does not have a namespace
> 

I tried first from within RStudio, then from R itself. Same outcome. 
Reinstalling Rcmdr, tcltk or tcltk2 package did not seem to help. 

I’m brand new to mac, so I may be missing something basic.  On the other hand I 
should confess to just having just “updated” Xcode.  

> R.Version()
$platform
[1] "x86_64-apple-darwin15.6.0"

$arch
[1] "x86_64"

$os
[1] "darwin15.6.0"

$system
[1] "x86_64, darwin15.6.0"

$status
[1] ""

$major
[1] "3"

$minor
[1] "4.1"

$year
[1] "2017"

$month
[1] "06"

$day
[1] "30"

$`svn rev`
[1] "72865"

$language
[1] "R"

$version.string
[1] "R version 3.4.1 (2017-06-30)"

$nickname
[1] "Single Candle"


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Re: [R-SIG-Mac] Rcmdr¡

[Fox, John]

Dear Dr. German,

I'll respond to your message in English, which is the language of this email 
list (and my written Spanish is poor anyway).

It's not clear from your email what problem or problems you're experiencing. 
You say that you can't install "them" (R, the Rcmdr package, other packages?) 
for "security factors" (what security factors?). 

If your aim is to install and use the R Commander-- you mention the Rcmdr in 
the subject of your message but not in the message itself -- then the 
installation notes at < 
http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html> 
might help, but they don't address security issues.

You might also consult the posting guide for the R email lists at < 
https://www.r-project.org/posting-guide.html>, which has useful information 
about how to ask a question.

I hope this helps,
 John

-
John Fox, Professor
McMaster University
Hamilton, Ontario, Canada
Web: socserv.mcmaster.ca/jfox

 
> -Original Message-
> From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of
> GERMAN GIACOMAN VALLEJOS
> Sent: Tuesday, June 6, 2017 1:10 AM
> To: r-sig-mac@r-project.org
> Subject: [R-SIG-Mac] Rcmdr¡
> 
> Quien me puede apoyar en la instalaci�n de R.app y otros paquetes para que
> puede usar en mi maquina MacBook Pro y poder usar diversos paquetes de R
> y su manejo en gr�ficos , al cual ya actualice a MacOs Sierra versi�n 10.12.5
> 
> MacBook Pro (15-inch, Mid 2012) Procesador 2.3 GHz Intel Core i7 memoria 4
> GB 1600 MHz DDR3 gr�ficos NVIDIA GeForce GT 650M 512 MB
> 
> Intel HD Graphics 4000 1536 MB.
> 
> He intentado instalarlos, pero no me deja por factores de seguridad.
> 
> Saludos
> 
> 
> Dr. Gi�coman
> 
>   [[alternative HTML version deleted]]

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[R-SIG-Mac] Rcmdr¡

[GERMAN GIACOMAN VALLEJOS]

Quien me puede apoyar en la instalaci�n de R.app y otros paquetes para que 
puede usar en mi maquina MacBook Pro y poder usar diversos paquetes de R y su 
manejo en gr�ficos , al cual ya actualice a MacOs Sierra versi�n 10.12.5

MacBook Pro (15-inch, Mid 2012) Procesador 2.3 GHz Intel Core i7 memoria 4 GB 
1600 MHz DDR3 gr�ficos NVIDIA GeForce GT 650M 512 MB

Intel HD Graphics 4000 1536 MB.

He intentado instalarlos, pero no me deja por factores de seguridad.

Saludos


Dr. Gi�coman

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Re: [R-SIG-Mac] Rcmdr and macOS Sierra

[Fox, John]

Dear Eric,

I'm also running Mac OS Sierra with the current Mac version of R 3.3.2, the 
current version of XQuartz, and all R packages up-to-date. The Rcmdr works 
perfectly fine for me. 

Here are my session and system info:

 snip ---

> Sys.info()
sysname 
"Darwin" 
release 
"16.1.0" 
version
"Darwin Kernel Version 16.1.0: Thu Oct 13 21:26:57 PDT 2016; 
root:xnu-3789.21.3~60/RELEASE_X86_64" 
nodename 
"Johns-MBP" 
machine 
"x86_64" 
login 
"johnfox" 
user 
"johnfox" 
effective_user 
"johnfox" 

> sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: macOS Sierra 10.12.1

locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] splines   stats graphics  grDevices utils datasets  methods   base  
   

other attached packages:
[1] Rcmdr_2.3-1 RcmdrMisc_1.0-5 sandwich_2.3-4  car_2.1-4  

loaded via a namespace (and not attached):
 [1] zoo_1.7-13  lattice_0.20-34 tcltk_3.3.2 
colorspace_1.3-2   
 [5] htmltools_0.3.5 mgcv_1.8-16 relimp_1.0-5
survival_2.40-1
 [9] e1071_1.6-7 nloptr_1.0.4foreign_0.8-67  
RColorBrewer_1.1-2 
[13] readxl_0.1.1plyr_1.8.4  stringr_1.1.0   
MatrixModels_0.4-1 
[17] munsell_0.4.3   gtable_0.2.0latticeExtra_0.6-28 knitr_1.15.1   

[21] SparseM_1.74quantreg_5.29   pbkrtest_0.4-6  parallel_3.3.2 

[25] class_7.3-14htmlTable_1.7   Rcpp_0.12.8 acepack_1.4.1  

[29] openssl_0.9.5   scales_0.4.1tcltk2_1.2-11   base64_2.0 

[33] Hmisc_4.0-1 abind_1.4-5 lme4_1.1-12 
gridExtra_2.2.1
[37] ggplot2_2.2.0   digest_0.6.10   stringi_1.1.2   grid_3.3.2 

[41] tools_3.3.2 magrittr_1.5lazyeval_0.2.0  tibble_1.2 

[45] Formula_1.2-1   cluster_2.0.5   MASS_7.3-45 Matrix_1.2-7.1 

[49] data.table_1.10.0   assertthat_0.1  minqa_1.2.4 rpart_4.1-10   

[53] nnet_7.3-12 nlme_3.1-128   

 snip --


And here's a guess: Perhaps you didn't restart your Mac (or alternatively log 
out of and back into your account) before starting R.app.

I hope this helps,
 John

--
John Fox, Professor
McMaster University
Hamilton, Ontario, Canada
Web: socserv.mcmaster.ca/jfox



> -Original Message-
> From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of
> Eric Leroy
> Sent: Thursday, December 15, 2016 3:30 AM
> To: r-sig-mac@r-project.org
> Subject: [R-SIG-Mac] Rcmdr and macOS Sierra
> 
> Hi,
> Since I installed the last version of R.app and macOS sierra, I am not
> able to launch R Commander. I type library(Rcmdr), I see some messages
> and the window of R commander never appears. It is the same with
> Rstudio. The only way I was able to launch Rcmdr is from XQuartz from
> xterm via R and then library(Rcmdr).
> Do you have the same problem and an idea to fix it?
> Best regards,
> 
> --
> 
> 
> Eric Leroy
> 
> Responsable de la plateforme microscopie électronique
> 
> ICMPE - UMR 7182 - CNRS - UPEC
> 
> 2/8, rue Henri Dunant
> 
> 94320 Thiais
> 
> Tél : 01.49.78.12.09
> 
> Fax : 01.49.78.12.03
> 
> courriel : eric.le...@icmpe.cnrs.fr <mailto:eric.le...@icmpe.cnrs.fr>
> 
> Page Web : : http://www.icmpe.cnrs.fr

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[R-SIG-Mac] Rcmdr and macOS Sierra

[Eric Leroy]

Hi,
Since I installed the last version of R.app and macOS sierra, I am not 
able to launch R Commander. I type library(Rcmdr), I see some messages 
and the window of R commander never appears. It is the same with 
Rstudio. The only way I was able to launch Rcmdr is from XQuartz from 
xterm via R and then library(Rcmdr).

Do you have the same problem and an idea to fix it?
Best regards,
--

*Eric Leroy*

/Responsable de la plateforme microscopie électronique/

ICMPE - UMR 7182 - CNRS - UPEC

2/8, rue Henri Dunant

94320 Thiais

Tél : 01.49.78.12.09

Fax : 01.49.78.12.03

courriel : eric.le...@icmpe.cnrs.fr 

Page Web : : http://www.icmpe.cnrs.fr

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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[Graham Smith]

As a further follow on, it seems that this issue only exits with the 32 bit
version of R.

There is no problem using th 64 bit version.

Thanks to everyone who has offered advice.

Graham

On Thursday, 12 April 2012, Graham Smith wrote:

 Not that this helps any, but just as an update

 I have reinstalled both R and TCL/TK, which has made no difference.

 Running Ubuntu 11.10 in virtual box on the Mac, I have updated R and Rcmdr
 to the same versions as on the Mac, and then successfully opened the same
 Dropbox folder that crases R on the Mac, from Rcmdr on Ubuntu.

 Note this isn't a Dropbox folder in the Virtual Machine, but the Dropbox
 folder on the Mac.

 So no  further forward than tying it down to being a Mac thing, rather
 than a Dropbox folder issue.

 Graham


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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[John Fox]

Dear Graham,

As I just verified, Data - Import data - From text file, clipboard, or
URL works fine for me, with R 2.15.0 and Rcmdr 1.8-3 (the version currently
on CRAN) under Mac OS X Lion.

I'm not sure what to suggest. Can you provide some more details?

Best,
 John


 -Original Message-
 From: r-sig-mac-boun...@r-project.org [mailto:r-sig-mac-bounces@r-
 project.org] On Behalf Of Graham Smith
 Sent: April-11-12 11:51 AM
 To: r-sig-mac@r-project.org
 Subject: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when
 trying import data
 
 I have just updated to R 2.15 on Lion but now when trying to import
 data using Rcmdr 1.8.3, both Rcmdr and R shut down.
 
 I can get to Open dialog box, but when I double click on a directory
 to open it, Rcmdr and R shut down.
 
 Selecting the directory and clicking on the Open button does nothing,
 not sure if it has ever done anything as I normally double click.
 
 It was working before upgrade and I can open data using the Data in
 packages menu.
 
 I have the same problem with both the Macs I have upgraded to 2.15, but
 a search hasn't found anyone else with the same problem.
 
 Has anyone any idea what might be wrong.
 
 Many thanks,
 
 Graham
 
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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[Graham Smith]

John,

Thanks for the rapid response



 As I just verified, Data - Import data - From text file, clipboard, or
 URL works fine for me, with R 2.15.0 and Rcmdr 1.8-3 (the version
 currently
 on CRAN) under Mac OS X Lion.

 I'm not sure what to suggest. Can you provide some more details?


Well, this is very weird, if I double click on any directory (other than
the one where my data is stored) it works fine.

Double clicking on my Dropbox folder (where my data is) shuts R and Rcmdr
down.

This is where my data has been for several years now, so it obviously
worked before the upgrade. It's the same on both Macs, so there must be
something odd about this directory, but I have no idea what it could be.

Thanks again,

Graham

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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[Simon Urbanek]

On Apr 11, 2012, at 12:36 PM, Graham Smith wrote:

 John,
 
 Thanks for the rapid response
 
 
 
 As I just verified, Data - Import data - From text file, clipboard, or
 URL works fine for me, with R 2.15.0 and Rcmdr 1.8-3 (the version
 currently
 on CRAN) under Mac OS X Lion.
 
 I'm not sure what to suggest. Can you provide some more details?
 
 
 Well, this is very weird, if I double click on any directory (other than
 the one where my data is stored) it works fine.
 
 Double clicking on my Dropbox folder (where my data is) shuts R and Rcmdr
 down.
 

Dropbox is typically write-only (i.e. you can't list it), so maybe check the 
permissions?

Cheers,
S

 This is where my data has been for several years now, so it obviously
 worked before the upgrade. It's the same on both Macs, so there must be
 something odd about this directory, but I have no idea what it could be.
 
 Thanks again,
 
 Graham
 
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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[David Winsemius]

One of the potential fixes to attempt would be to track down the  
usually invisible .Rdata file that sometimes gets corrupted. You may  
need to use a Terminal session to do this. The fact that this only  
happens with the default or usual directory is what makes me think  
this common fix may succeed.


--
David


On Apr 11, 2012, at 12:36 PM, Graham Smith wrote:


John,

Thanks for the rapid response




As I just verified, Data - Import data - From text file,  
clipboard, or

URL works fine for me, with R 2.15.0 and Rcmdr 1.8-3 (the version
currently
on CRAN) under Mac OS X Lion.

I'm not sure what to suggest. Can you provide some more details?


Well, this is very weird, if I double click on any directory (other  
than

the one where my data is stored) it works fine.

Double clicking on my Dropbox folder (where my data is) shuts R and  
Rcmdr

down.

This is where my data has been for several years now, so it obviously
worked before the upgrade. It's the same on both Macs, so there must  
be
something odd about this directory, but I have no idea what it could  
be.


Thanks again,

Graham

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David Winsemius, MD
West Hartford, CT

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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[Graham Smith]

David


One of the potential fixes to attempt would be to track down the usually
 invisible .Rdata file that sometimes gets corrupted. You may need to use a
 Terminal session to do this. The fact that this only happens with the
 default or usual directory is what makes me think this common fix may
 succeed.


Thanks, but which .Rdata file are you referring to. There are none in the
Dropbox directory itself, but several scattered about.

As an after thought, I see that in the Frameworks directory I still have a
resources folder for 2.13, and 2.14, as well as now 2.15. Should I delete
these redundant folders for the older versions of R. Could this somehow be
confusing Rcmdr.

Thanks,

Graham

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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[John Fox]

Dear Graham,

I'm glad that you've gotten a bit further diagnosing the problem. I'm not
sure why the problem would afflict only the Rcmdr but one guess is that it's
Tcl/Tk related. Anyway, a work-around is to move the data to another
location.

Best,
 John

 -Original Message-
 From: r-sig-mac-boun...@r-project.org [mailto:r-sig-mac-bounces@r-
 project.org] On Behalf Of Graham Smith
 Sent: April-11-12 12:58 PM
 To: r-sig-mac@r-project.org
 Subject: Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down
 when trying import data
 
 Simon,
 
 
  Dropbox is typically write-only (i.e. you can't list it), so maybe
  check the permissions?
 
 
 As far as I can see permissions are OK, but not sure why this would
 only affect Rcmdr ?
 
 There is no problem using R, or Rstudio, excel etc its just Rcmdr that
 is having a problem, and only since the update to 2.15.
 
 Thanks,
 
 Graham
 
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Re: [R-SIG-Mac] Rcmdr 1.8.3 on Lion with R 2.15 shutting down when trying import data

[Graham Smith]

John,

 I'm glad that you've gotten a bit further diagnosing the problem. I'm not
 sure why the problem would afflict only the Rcmdr but one guess is that
 it's
 Tcl/Tk related. Anyway, a work-around is to move the data to another
 location.


I may try re-installing Tcl/Tk. Unfortunately, moving the data to another
location isn't a solution as my entire file management system revolves
around  the files being in Dropbox to share files between computers.

It's not a massive problem, as I don't regularly use Rcmdr, but I like to
know its working for when I do

If I resolve the problem I will post the solution here.

Thanks for your help.

Graham

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[R-SIG-Mac] Rcmdr 1.7.2 on Mac

[John Fox]

Dear Kristian,

Odd as it seems, I think that the problem is with the CRAN build of the
Rcmdr package. When I tried installing the Rcmdr package version 1.7-2 on my
own Mac (OS X Lion, R 2.14.0) from CRAN via install.packages(Rcmdr) I got
the same error as your students, but when I installed from CRAN sources,
install.packages(Rcmdr, type=source), the package worked just fine.
(There is one .c file in the Rcmdr sources.)

I'm not sure what's going on and thus have copied this response to the R Mac
email list for comments.

Best,
 John


John Fox
Senator William McMaster
  Professor of Social Statistics
Department of Sociology
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox




 -Original Message-
 From: Kristian Hovde Liland [mailto:kristian.lil...@umb.no]
 Sent: November-10-11 4:39 PM
 To: 'j...@mcmaster.ca'
 Subject: Rcmdr 1.7.2 on Mac
 
 Dear John Fox.
 
 
 
 Thank you again for your feedback after my talk at useR! on teaching
 statistics to natural science students.
 
 
 
 I am getting feedback from several Mac users that are installing Rcmdr
 1.7.2 on a fresh install of R 2.14.0 that the R Commander will not
 launch. There is an error concerning a missing file named Rcmdr.so both
 for 32-bit and 64-bit installations.
 
 
 
 Do you have any tips? Or do you know where I can get hold of the Mac
 version of Rcmdr 1.7.0 as a temporary fix?
 
 
 
 Best regards,
 
 Kristian Hovde Liland
 
 
 
 
 


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Re: [R-SIG-Mac] Rcmdr 1.7.2 on Mac

[Simon Urbanek]

John,

can you, please, be more specific? Rcmds from CRAN works just fine for me -- 
can you at least include the exact error and sessionInfo()?

Thanks,
Simon

On Nov 10, 2011, at 5:24 PM, John Fox wrote:

 Dear Kristian,
 
 Odd as it seems, I think that the problem is with the CRAN build of the
 Rcmdr package. When I tried installing the Rcmdr package version 1.7-2 on my
 own Mac (OS X Lion, R 2.14.0) from CRAN via install.packages(Rcmdr) I got
 the same error as your students, but when I installed from CRAN sources,
 install.packages(Rcmdr, type=source), the package worked just fine.
 (There is one .c file in the Rcmdr sources.)
 
 I'm not sure what's going on and thus have copied this response to the R Mac
 email list for comments.
 
 Best,
 John
 
 
 John Fox
 Senator William McMaster
  Professor of Social Statistics
 Department of Sociology
 McMaster University
 Hamilton, Ontario, Canada
 http://socserv.mcmaster.ca/jfox
 
 
 
 
 -Original Message-
 From: Kristian Hovde Liland [mailto:kristian.lil...@umb.no]
 Sent: November-10-11 4:39 PM
 To: 'j...@mcmaster.ca'
 Subject: Rcmdr 1.7.2 on Mac
 
 Dear John Fox.
 
 
 
 Thank you again for your feedback after my talk at useR! on teaching
 statistics to natural science students.
 
 
 
 I am getting feedback from several Mac users that are installing Rcmdr
 1.7.2 on a fresh install of R 2.14.0 that the R Commander will not
 launch. There is an error concerning a missing file named Rcmdr.so both
 for 32-bit and 64-bit installations.
 
 
 
 Do you have any tips? Or do you know where I can get hold of the Mac
 version of Rcmdr 1.7.0 as a temporary fix?
 
 
 
 Best regards,
 
 Kristian Hovde Liland
 
 
 
 
 
 
 
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 R-SIG-Mac@r-project.org
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Re: [R-SIG-Mac] Rcmdr 1.7.2 on Mac

[Simon Urbanek]

John,

please see today's R-SIG-Mac posts.

(And FWIW the run is done so you if you use r.research.att.com as repos you'll 
get the updated packages - I guess CRAN will follow in a few hours).

Cheers,
Simon


On Nov 10, 2011, at 6:38 PM, John Fox wrote:

 Dear Simon,
 
 I was hoping that you'd pick this up -- thanks.
 
 Here's an entire session, including installing the package, trying to load it 
 (showing the error), and the session info. As I said, when I install from 
 source (also from CRAN), there's no problem.
 
 Best,
 John
 
  snip --
 
 
 R version 2.14.0 (2011-10-31)
 Copyright (C) 2011 The R Foundation for Statistical Computing
 ISBN 3-900051-07-0
 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
 You are welcome to redistribute it under certain conditions.
 Type 'license()' or 'licence()' for distribution details.
 
  Natural language support but running in an English locale
 
 R is a collaborative project with many contributors.
 Type 'contributors()' for more information and
 'citation()' on how to cite R or R packages in publications.
 
 Type 'demo()' for some demos, 'help()' for on-line help, or
 'help.start()' for an HTML browser interface to help.
 Type 'q()' to quit R.
 
 [R.app GUI 1.42 (5933) x86_64-apple-darwin9.8.0]
 
 [History restored from /Users/jfox/.Rapp.history]
 
 install.packages(Rcmdr)
 trying URL 
 'http://probability.ca/cran/bin/macosx/leopard/contrib/2.14/Rcmdr_1.7-2.tgz'
 Content type 'application/x-gzip' length 2989140 bytes (2.9 Mb)
 opened URL
 ==
 downloaded 2.9 Mb
 
 
 The downloaded packages are in
   
 /var/folders/lg/jw1b4glj3ms49rfy9744jvdhgn/T//RtmpMvycwZ/downloaded_packages
 
 library(Rcmdr)
 Loading required package: tcltk
 Loading Tcl/Tk interface ... done
 Loading required package: car
 Loading required package: MASS
 Loading required package: nnet
 Loading required package: survival
 Loading required package: splines
 Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object 
 '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcmdr/libs/x86_64/Rcmdr.so':
  
 dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcmdr/libs/x86_64/Rcmdr.so,
  6): Library not loaded: 
 @rpath/R.framework/Versions/2.14/Resources/lib/libR.dylib
  Referenced from: 
 /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcmdr/libs/x86_64/Rcmdr.so
  Reason: image not found
 Error: package/namespace load failed for ‘Rcmdr’
 
 sessionInfo()
 R version 2.14.0 (2011-10-31)
 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
 
 locale:
 [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
 
 attached base packages:
 [1] splines   tcltk stats graphics  grDevices utils datasets  
 methods  
 [9] base 
 
 other attached packages:
 [1] car_2.0-11   survival_2.36-10 nnet_7.3-1   MASS_7.3-16 
 
 loaded via a namespace (and not attached):
 [1] tools_2.14.0
 
 
 
 -Original Message-
 From: Simon Urbanek [mailto:simon.urba...@r-project.org] 
 Sent: November-10-11 6:29 PM
 To: John Fox
 Cc: 'Kristian Hovde Liland'; r-sig-mac@r-project.org
 Subject: Re: [R-SIG-Mac] Rcmdr 1.7.2 on Mac
 
 John,
 
 can you, please, be more specific? Rcmds from CRAN works just fine for me --
 can you at least include the exact error and sessionInfo()?
 
 Thanks,
 Simon
 
 On Nov 10, 2011, at 5:24 PM, John Fox wrote:
 
 Dear Kristian,
 
 Odd as it seems, I think that the problem is with the CRAN build of 
 the Rcmdr package. When I tried installing the Rcmdr package version 
 1.7-2 on my own Mac (OS X Lion, R 2.14.0) from CRAN via 
 install.packages(Rcmdr) I got the same error as your students, but 
 when I installed from CRAN sources, install.packages(Rcmdr,
 type=source), the package worked just fine.
 (There is one .c file in the Rcmdr sources.)
 
 I'm not sure what's going on and thus have copied this response to the 
 R Mac email list for comments.
 
 Best,
 John
 
 
 John Fox
 Senator William McMaster
 Professor of Social Statistics
 Department of Sociology
 McMaster University
 Hamilton, Ontario, Canada
 http://socserv.mcmaster.ca/jfox
 
 
 
 
 -Original Message-
 From: Kristian Hovde Liland [mailto:kristian.lil...@umb.no]
 Sent: November-10-11 4:39 PM
 To: 'j...@mcmaster.ca'
 Subject: Rcmdr 1.7.2 on Mac
 
 Dear John Fox.
 
 
 
 Thank you again for your feedback after my talk at useR! on teaching 
 statistics to natural science students.
 
 
 
 I am getting feedback from several Mac users that are installing 
 Rcmdr
 1.7.2 on a fresh install of R 2.14.0 that the R Commander will not 
 launch. There is an error concerning a missing file named Rcmdr.so 
 both for 32-bit and 64-bit installations.
 
 
 
 Do you have any tips? Or do you know where I can get hold of the Mac 
 version of Rcmdr 1.7.0 as a temporary fix