Hi,
The file is downloaded and filtered from the ilincs website. Unfortunately
it is not readily available from ilincs.org itself. We have the capability
of storing the file in our S3 buckets, however.
The metadata under discussion is metadata related to each individual
signature stored in
Hello,
Regarding Hub use:
What sort of information does the metadata contain? That would determine
whether ExperimentHub or AnnotationHub is more appropriate. Is the file
accessed directly from the http://ilincs.org/ portal with a url link or is
there processing/filtering that occurs? The
We are investigating the issue and will reach back out shortly.
In the meantime please correct other ERROR/Warnings/Notes and you can let the
reviewer know we are working on this issue.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of
On Thu, Aug 31, 2023 at 7:28 AM Martin Grigorov
wrote:
> Hello,
>
> Perhaps you could use https://bioconductor.r-universe.dev/BiocFileCache to
> download the big file on demand.
> The benefit is that the file would be stored in ~/.cache/R/yourPackage/
> (for Linux; something similar for
Hello,
Perhaps you could use https://bioconductor.r-universe.dev/BiocFileCache to
download the big file on demand.
The benefit is that the file would be stored in ~/.cache/R/yourPackage/
(for Linux; something similar for Windows/Mac) and reused between sessions.
Regards,
Martin
On Tue, Aug 29,
