Re: [Bioc-devel] Update existing packages and change name

On 05/22/2018 05:46 AM, Sokratis Kariotis wrote: Hi all, After lots of tries we decided to follow your second suggestion. How can we stop the support for 32-bit windows? An obvious place to start is with a less comprehensive example data set; > geo_sum_data class: SummarizedExperiment dim:

Re: [Bioc-devel] Update existing packages and change name

Hi all, After lots of tries we decided to follow your second suggestion. How can we stop the support for 32-bit windows? Cheers, Sokratis On 22 March 2018 at 15:14, Hervé Pagès wrote: > Hi Sokratis, > > On 03/22/2018 06:13 AM, Sokratis Kariotis wrote: > >> Hey all, >>

Re: [Bioc-devel] Update existing packages and change name

Hi Sokratis, On 03/22/2018 06:13 AM, Sokratis Kariotis wrote: Hey all, I have been updating my pathprint and pathprintGeoData packages (in 3.7) and I encountered the following error in one of them (only on windows server): Error: cannot allocate vector of size 237.3 Mb Here is the report:

Re: [Bioc-devel] Update existing packages and change name

Hey all, I have been updating my pathprint and pathprintGeoData packages (in 3.7) and I encountered the following error in one of them (only on windows server): Error: cannot allocate vector of size 237.3 Mb Here is the report: https://bioconductor.org/checkResults/3.7/bioc-LATEST/

Re: [Bioc-devel] Update existing packages and change name

Builds run once a day starting at 5pm EST. Commits made before that time will be included in the next day's build report. Did you commit changes to the Bioconductor git server and not just github? If they made it to the git server you will see them in the logs. Check the logs. Did you bump the

Re: [Bioc-devel] Update existing packages and change name

Hi, There is a max file size restriction of <= 5MB for software packages. This information was missing from our package guidelines so I've just added it. The built tarball for a software package is restricted to <= 4MB so files over 5 MB aren't a good idea. Why so much data in the software

Re: [Bioc-devel] Update existing packages and change name

Hi Sokratis, Unfortunately you can't rename a package ... and there is no such thing as a 'sub package'. Maybe you meant sub-package terms of dependencies. If you have new data to add that's independent of what's in pathprintGEOData you can create a new data package. I'm not sure what you

[Bioc-devel] Update existing packages and change name

Hey all, I am updating 2 of my packages (pathprint & pathprintGEOData) with considerably more data and a few code updates. I also want to change the name of the data package to reflect the new content. Can the package name be changed or do I have to create new sub-packages? Thanks in advance.