Re: [Bioc-devel] Request to Retire COHCAP Bioconductor Package

2024-04-16 Thread Kern, Lori via Bioc-devel
We normally like to do a full round of a package in a deprecation state before removal completely (so deprecated in Bioc 3.19 and removed in Bioc 3.20) but since there are no reverse dependencies, I don't think this should be an issue to directly remove from 3.19 without deprecation. Please

Re: [Bioc-devel] Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`

2024-04-16 Thread Kern, Lori via Bioc-devel
Hello maintainers, A little over a year ago, Bioconductor moved forward with a default branch renaming from 'master' to 'devel' on git.bioconductor.org. For an easier transition we have thus far left the deprecated 'master' branch and if you were pushing received a Warning message that this

Re: [Bioc-devel] Request to Retire COHCAP Bioconductor Package

2024-04-16 Thread Charles Warden via Bioc-devel
Hi Lori, Thank you very much for your help. As long as it won't be a problem that I don't think my COH e-mail address will not be able to receive messages after 4/30, then I agree to direct removal. I believe this is what has been discussed with Yate-Ching and Xiwei, in terms of the general