'
Subject: Re: [Bioc-devel] Biostrings: substitution matrices disappeared?
Good. I also just pushed 2 additional small tweaks (commits 0e98500 and
84c8ed5) right after you pushed yours. Hopefully I didn't step on your toes.
H.
On 4/25/24 01:04, Ulrich Bodenhofer wrote:
Great, thanks, Hervé! I
ch
>
> *From:*Hervé Pagès
> *Sent:* Thursday, April 25, 2024 9:52 AM
> *To:* ulr...@bodenhofer.com
> *Cc:* bioc-devel@r-project.org; 'Martin Grigorov'
>
> *Subject:* Re: [Bioc-devel] Biostrings: substitution matrices disappeared?
>
> I'm done. Please resync you GitHub r
Great, thanks, Hervé! I also made two more fixes and pushed them.
Cheers, Ulrich
From: Hervé Pagès
Sent: Thursday, April 25, 2024 9:52 AM
To: ulr...@bodenhofer.com
Cc: bioc-devel@r-project.org; 'Martin Grigorov'
Subject: Re: [Bioc-devel] Biostrings: substitution matrices disappeared
é Pagès
> *Sent:* Thursday, April 25, 2024 9:06 AM
> *To:* ulr...@bodenhofer.com; 'Martin Grigorov'
> *Cc:* bioc-devel@r-project.org
> *Subject:* Re: [Bioc-devel] Biostrings: substitution matrices disappeared?
>
> Hi Ulrich,
>
> Yes the substitution matrices a
: Re: [Bioc-devel] Biostrings: substitution matrices disappeared?
Hi Ulrich,
Yes the substitution matrices are now in pwalign. I'm taking care of msa. Sorry
for that.
Best,
H.
On 4/24/24 23:25, Ulrich Bodenhofer wrote:
Ah, thank you very much, sorry for having overlooked this! Yes
:52 AM
> To:ulr...@bodenhofer.com
> Cc:bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] Biostrings: substitution matrices disappeared?
>
> Hi,
>
> Yesterday there was another email about Biostrings
> -https://stat.ethz.ch/pipermail/bioc-devel/2024-April/020395.html
>
?
Thanks and best regards,
Ulrich
From: Martin Grigorov
Sent: Thursday, April 25, 2024 7:52 AM
To: ulr...@bodenhofer.com
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Biostrings: substitution matrices disappeared?
Hi,
Yesterday there was another email about Biostrings -
https
Hi,
Yesterday there was another email about Biostrings -
https://stat.ethz.ch/pipermail/bioc-devel/2024-April/020395.html
I thought it might be related to your problem.
Regards,
Martin
On Thu, Apr 25, 2024 at 8:23 AM Ulrich Bodenhofer <
ulrich.bodenho...@gmail.com> wrote:
> Dear colleagues,
Dear colleagues, dear BioC core team,
One of my packages in the devel branch, the msa package seems broken since
yesterday. The vignette does not run anymore (therefore, the package does
not build), and the reason is that the BLOSUM62 substitution matrix cannot
be loaded form the Biostrings
