Le Fri, Sep 05, 2014 at 11:13:40AM +0200, Thorsten Glaser a écrit :
So please, do not outright dismiss scenarios you personally
cannot imagine.
Please consider that your comments on the limited imagination of others can be
felt as deliberately offensive.
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point 3 here:
https://www.eff.org/deeplinks/2011/06/eff-and-bitcoin
Hi Santiago,
The EFF changed its mind two years later.
https://www.eff.org/deeplinks/2013/05/eff-will-accept-bitcoins-support-digital-liberty
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Changed-By: Charles Plessy ple...@debian.org
Description:
samtools - processing sequence alignments in SAM and BAM formats
samtools-test - test files for the samtools package.
Closes: 544976
Changes:
samtools (1.0-1~experimental) experimental; urgency=low
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Le Thu, Aug 14, 2014 at 09:36:50PM +0900, Charles Plessy a écrit :
Here is a patch to update the Policy accordingly. Do you have comments ?
On Tue, Aug 19, 2014 at 07:44:19AM +0900, Charles Plessy wrote:
Anybody wanting to see the Testsuite field documented in the Policy, please
-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
htslib-test - Test data for HTSlib
libhts-dev - Development files for the HTSlib
libhts1- C library for high-throughput sequencing data formats
tabix - generic indexer for TAB-delimited genome
together and
that the fix in HTSJDK will eventually propagate to Picard ?
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Le Thu, Aug 14, 2014 at 09:36:50PM +0900, Charles Plessy a écrit :
Package: debian-policy
Version: 3.9.5
Severity: wishlist
Hi Guillem and everybody,
thanks for adding direct support for the Testsuite field in Dpkg.
Here is a patch to update the Policy accordingly. Do you have
Le Sun, Aug 17, 2014 at 09:00:57AM +0200, Raphael Hertzog a écrit :
debian/unstable also doesn't follow debian/codename because unstable's
codename is sid. And I really mean that codename is a better choice than
suite (e.g. unstable, testing, stable).
Hi all,
for suites that are never
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (475-1) unstable; urgency=medium
.
* New upstream release.
* debian/rules:
- removed compression command, as it is now the default
not find better than importing the
release tarball with ‘git-import-orig’ instead of following Upstream's master
branch.
Have a nice week-end,
Charles
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Package: debian-policy
Version: 3.9.5
Severity: wishlist
Hi Guillem and everybody,
thanks for adding direct support for the Testsuite field in Dpkg.
Here is a patch to update the Policy accordingly. Do you have comments ?
Have a nice day,
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From
a process for peer review at the URL below.
https://wiki.debian.org/CopyrightReview
Have a nice day,
[0]
https://lists.debian.org/alpine.deb.2.02.1408060907090.9...@jupiter.server.alteholz.net
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Changed-By: Charles Plessy ple...@debian.org
Description:
treeviewx - Displays and prints phylogenetic trees
Closes: 751255
Changes:
treeviewx (0.5.1+20100823-3) unstable; urgency=low
.
* Normalised debian/control and updated VCS URLs with ‘config-model-edit’.
* Conforms
/collab-maint/ffmpeg.git
Hi Andreas,
I searched for license information missing from your debian/copyright and could
find only one case, libavutil/x86/x86inc.asm, which is under the ISC license.
The debian/copyright file of your package looks comprehensive to me.
Have a nice week-end,
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by
herself, and spontaneoulsy told me how impressed she was by the user
interface of Debian.
The common point between these colleagues, is that they knew nothing about the
Gnome 2/3 controversy, and were more used to the Mac or Windows interfaces.
/my life as well
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Changed-By: Charles Plessy ple...@debian.org
Description:
infernal - inference of RNA secondary structural alignments
infernal-dbg - debug information for infernal
infernal-doc - inference of RNA secondary structural alignments – documentation
Changes:
infernal
be dealt with a DAK command file ?)
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field ? Do you
think that modifications are needed ? Would you second it ?
https://bugs.debian.org/756835
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not affect currently accepted licenses, then the
rejection of CC-BY-SA 2.0 is not justified.
Tautologically,
Charles
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would be nice…
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, as this value is assumed for
paragraphs lacking this field.
-
Everybody's suggestions are welcome !
Have a nice week-end, and big thank you to Ansgar and the other FTP Masters for
the source-only uploads !
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if it is against their own
interest since they may see their packages removed at the end.
Otherwise we are in that kind of frequent Debianesque situation where the
winning strategy is to stay silent as long as possible.
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no result.
Can you please stop to pollute this list each time there is ‘systemd’ in the
subject ?
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pepole are enough to destroy
the productivity of a mailing list).
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Changed-By: Charles Plessy ple...@debian.org
Description:
libwsdl2c-java - stripped down axis2 source bundle suitable for running WSDL2C
Closes: 755333
Changes:
wsdl2c (0.1-3) unstable; urgency=low
.
[ Charles Plessy ]
* Team upload.
* Normalised debian/control with config-model
for your inspiring answer. After reading it, I tested both
tools and I chose gbp-pq because my packaging team is already using
git-buildpackage a lot (and because git-dpm quilckly gave me an error).
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importance in Debian because we accumulate patches
that have little relevance for Upstream and the software's users. One of the
solution is to standardise the patch systems, but another solution is to stop
producing patches that have no practical impact for the users.
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the 3.0 (quilt) format is starting to show its age. We need to
be ready for the post-tarball era…
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Changed-By: Charles Plessy ple...@debian.org
Description:
bioperl- Perl tools for computational molecular biology
libbio-perl-perl - BioPerl core perl modules
Changes:
bioperl (1.6.924-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1
Changed-By: Charles Plessy ple...@debian.org
Description:
mafft - Multiple alignment program for amino acid or nucleotide sequences
Changes:
mafft (7.158-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
dad5756c248bb7748a234e59667d138326bead5a 1974 mafft_7.158-1.dsc
our users. If they are
willing to do this, that would convince me that they are not just talking. On
my side, while I can not be convinced to rename programs in a situation like
this one, I will not block people doing it.
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http
machine is close to zero, and the
probability that users of both amaps will be annoyed by the rename is close to
one. I think that these renamings are applied dogmatically in a way that makes
Debian inferior. I do not want to participate to this.
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’.
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2.2-4 install the file ‘amap’ in ‘/usr/bin’,
this is why I am worried about clashes.
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Il Sabato 5 Luglio 2014 13:03, Charles Plessy ple...@debian.org ha
scritto:
The ‘amap-align’ package version 2.2-4 install the file ‘amap’ in
‘/usr/bin’,
this is why I am worried about clashes.
Le Sat, Jul 05, 2014 at 12:11:37PM +0100, Gianfranco Costamagna a écrit :
According
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Sat, 05 Jul 2014 20:27:10 +0900
Source: cloud-init
Binary: cloud-init
Architecture: source all
Version: 0.7.6~bzr976-2
Distribution: unstable
Urgency: medium
Maintainer: Charles Plessy ple...@debian.org
Changed-By: Charles Plessy
framework.
Doesn't it look like a nice ending to the story ?
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Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libstaden-read-dev - development files for libstaden-read
libstaden-read1 - Staden library for reading and writing DNA sequencing results
staden-io-lib
Changed-By: Charles Plessy ple...@debian.org
Description:
mafft - Multiple alignment program for amino acid or nucleotide sequences
Changes:
mafft (7.157-1) unstable; urgency=medium
.
* New upstream release.
* debian/control
- Added substitution variable ${perl:Depends}, used
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Wed, 04 Jun 2014 21:35:38 +0900
Source: umegaya
Binary: umegaya
Architecture: source all
Version: 1.0
Distribution: unstable
Urgency: low
Maintainer: Charles Plessy ple...@debian.org
Changed-By: Charles Plessy ple...@debian.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Wed, 04 Jun 2014 07:21:45 +0900
Source: cloud-init
Binary: cloud-init
Architecture: source all
Version: 0.7.6~bzr976-1
Distribution: unstable
Urgency: medium
Maintainer: Charles Plessy ple...@debian.org
Changed-By: Charles Plessy
Le Sun, Jun 01, 2014 at 11:07:32PM +0200, Julien Cristau a écrit :
On Fri, May 30, 2014 at 07:21:08 +0900, Charles Plessy wrote:
Perhaps we can stop overriding this option ? For a lot of scientific
packages, -O3 is chosen by the upstream author, and I always feel bad
that if we make
packages, -O3 is chosen by the upstream author, and I always feel bad
that if we make the programs slower by overriding it to -O2, it will
reflect poorly on Debian as a distribution for scientific works.
Have a nice day,
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-By: Charles Plessy ple...@debian.org
Description:
mime-support - MIME files 'mime.types' 'mailcap', and support programs
Changes:
mime-support (3.56) unstable; urgency=medium
.
* Media types added:
e47e5a6 application/vnd.debian.binary-package
.
* Mailcap:
e47e5a6 Replaced a/x-debian
-mime-info and file packages,
and update the mime-support package accordingly.
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is included in the chapter entitled GNU
Free Documentation License.
Have a nice day,
Charles
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files again instead of using an epoch to reactivate the
old tarball. What do you think?
Usually releases are on July 15th. I think that we can wait for the next
upload, at that time or earlier, to re-introduce the manual.
Cheers,
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http
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Sat, 17 May 2014 14:21:24 +0900
Source: cloud-init
Binary: cloud-init
Architecture: source all
Version: 0.7.5-1
Distribution: unstable
Urgency: medium
Maintainer: Charles Plessy ple...@debian.org
Changed-By: Charles Plessy ple
, the
maintainers time and patience has been spent up by others. Message filters are
a solution to this.
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migration.
Said differently, judging from what is written in the long threads here, people
who do not want systemd seem to be running servers or exotic desktop systems,
so how about only sending a debconf prompt in these cases ?
Have a nice day,
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who have time to give but do not have the right skill set to work on
Alioth or Mailman may consider helping the new PTS instead.
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Changed-By: Charles Plessy ple...@debian.org
Description:
seaview- Multiplatform interface for sequence alignment and phylogeny
Changes:
seaview (1:4.5.1-1) unstable; urgency=medium
.
* New upstream version
.
[ Andreas Tille ]
* debian/upstream - debian/upstream/metadata
not tell the media type.
Thanks to Reuben Thomas r...@sc3d.org, Closes: #77985
56dba74 Remove last-resort guesses of crontabs and man pages.
-- Charles Plessy ple...@debian.org Wed, 07 May 2014 07:03:23 +0900
-
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Hi Matthias,
your answer exemplifies very well what I mean with “pressed by the machine”…
I will reply on one point only.
Le Wed, May 07, 2014 at 01:46:32AM +0200, Matthias Klose a écrit :
Am 06.05.2014 03:05, schrieb Charles Plessy:
When the first mass rebuilds with GCC and porting
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Wed, 07 May 2014 07:03:23 +0900
Source: mime-support
Binary: mime-support
Architecture: source all
Version: 3.55
Distribution: unstable
Urgency: low
Maintainer: Mime-Support Maintainers mime-supp...@plessy.org
Changed-By: Charles
. Can't
we have a GCC foundation that takes care of this ? I will be happy to donate
regularly.
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it is run, and this happens each time files change in
/usr/lib/mime/packages
and /usr/share/applications…
Any recommendation ? In the absence of answer, I think that I will implement
the warnings.
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for the presence of a media type
at the beginning of each line, and emit a warning otherwise. This would
answer to http://bugs.debian.org/384161.
Please let me know if you see reasons for not doing so (and in that case,
patches are more than welcome).
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in our source packages.
c) Focus our requirements for source code on the binary packages and the files
necessary to rebuild them from the source packages.
People know which one is my favorite, so I will not repeat it here :)
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/2013-December/012969.html
I volunteer to contact them in case the idea takes momentum here.
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a tag tends to be ignored by a large number of package maintainers.
For example, I am very tempted to start to override hyphen-used-as-minus-sign
tags with a justification such as “Never going to work; will not spend my time
on this; others may do as they wish”.
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snapshot.debian.org, this would
give Debian a strong momentum on that use case. Of course, I understand that
implementing this properly is a lot of work.
PS: I started to read about Nix, thanks for the link. This is exciting.
Have a nice week-end,
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Le Fri, Apr 25, 2014 at 10:11:58PM -0700, Steve Langasek a écrit :
On Sat, Apr 26, 2014 at 02:07:22PM +0900, Charles Plessy wrote:
Le Sat, Apr 26, 2014 at 11:41:17AM +0800, Paul Wise a écrit :
On Sat, Apr 26, 2014 at 1:39 AM, Daniel Pocock wrote:
a generalized approach is needed
the maintainers abandon them or Debian altogether.
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large that this level of coordination is not
reachable ?
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you can not do is to decide
to apply the patch, commit it to the Policy's Git repository, and upload a new
version.
Lastly, you may find the (Debian Enhancement Proposals) DEP framework useful to
make your efforts more visible.
http://dep.debian.net/deps/dep0/
Have a nice day,
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Le Sun, Apr 20, 2014 at 11:06:00PM -0300, Henrique de Moraes Holschuh a écrit :
On Mon, 21 Apr 2014, Charles Plessy wrote:
things are too slow or not happening is the lack of manpower. See for
example
the documentation of the Dpkg triggers: we miss only one single Debian
Developer
-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
python-pysam - interface for the SAM/BAM sequence alignment and mapping format
python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping
format (
Changes:
python-pysam (0.7.7-1
-studio-desktop
+ postinst script asks foo-player to use PulseAudio.
How could such postinst scripts look?
Hi Jonas,
If the maintainer scripts of the three packages can cooperate, have you
considered using Dpkg triggers ?
Have a nice day
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break the circle !
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that the
patch for #744664 has been applied and that the uploaded package is now in the
NEW queue for unrelated reasons.
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took action to make
it
migrate, and it was cancelled by porters who wanted to fix a bug affecting their
architecture instead of having the package removed on that architecture. Thus,
I do spend time on my packages which do not migrate from unstable to testing.
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? Are there more packages that
fail to build after autoreconf, than packages that fail to build without ?
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appropriate, which would not be
the case here).
Or if you base your reports on Ubuntu, could you add a filter that checks
the version numbers and helps you to reduce the false positives ?
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Tsurumi
Changed-By: Charles Plessy ple...@debian.org
Description:
mafft - Multiple alignment program for amino acid or nucleotide sequences
Changes:
mafft (7.149-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
9860f9f5f68216c164addcc18af4710627d4a73b 1969 mafft_7.149-1.dsc
correspondence on this issue:
[IANA #754162]
You can also simply reply to this message, as this tag is already in
the subject line.
Thank you,
The Internet Assigned Numbers Authority
iana-m...@iana.org
-
Name : Charles
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libsam-java - Java library to manipulate SAM and BAM files
picard-tools - Command line tools to manipulate SAM and BAM files
Changes:
picard-tools (1.110-1) unstable; urgency=medium
.
* Imported Upstream version
Changed-By: Charles Plessy ple...@debian.org
Description:
mafft - Multiple alignment program for amino acid or nucleotide sequences
Changes:
mafft (7.147-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
19af6e72658c8d7a2f02d6c9342cc36453be9845 1969 mafft_7.147-1.dsc
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
bedtools - suite of utilities for comparing genomic features
bedtools-test - test data for the bedtools package
Changes:
bedtools (2.19.1-1) unstable; urgency=medium
.
479e63b Merge tag 'v2.19.1' into debian
Le Fri, Mar 21, 2014 at 04:07:33PM +0900, Charles Plessy a écrit :
Hi Guillem and everybody,
I agree with your suggestions.
If there are no further comments I will submit the media type after
correcting the points below.
For the record, here is the latest version.
Have a nice day
Hi Guillem and everybody,
I agree with your suggestions.
If there are no further comments I will submit the media type after
correcting the points below.
Have a nice day,
-- Charles
Le Wed, Mar 19, 2014 at 03:22:38AM +0100, Guillem Jover a écrit :
This still seems confusing, “Debian format
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libsam-java - Java library to manipulate SAM and BAM files
picard-tools - Command line tools to manipulate SAM and BAM files
Changes:
picard-tools (1.109-1) unstable; urgency=medium
.
* Imported Upstream versions
not motivate and rather
leads people to give up.
Have a nice week-end.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Changed-By: Charles Plessy ple...@debian.org
Description:
libstaden-read-dev - development files for libstaden-read
libstaden-read1 - Staden library for reading and writing DNA sequencing results
staden-io-lib-utils - programs
for modification because they do not contain the
typical revision information and comments found in version control systems used
upstream. This was not the case when Debian was founded, but as the world
evolves, we need to evolve.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team
rather clone an upstream Git
repository than apt-get-sourcing the not-always latest source from our archive.
Therefore, more than ever, it is on the binary packages that we must commit on
the highest level. The upstream source tarball matters much less.
Cheers,
--
Charles Plessy
Debian Med
that issue before sending it.
Have a week-end,
Charles
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Changed-By: Charles Plessy ple...@debian.org
Description:
bedtools - suite of utilities for comparing genomic features
Closes: 714873
Changes:
bedtools (2.19.0-1) unstable; urgency=low
.
e07e70c Imported Upstream version 2.19.0
afdc61a Watch GitHub at https://github.com/arq5x/bedtools2
Le Thu, Feb 13, 2014 at 07:08:44AM +0800, Paul Wise a écrit :
On Wed, Feb 12, 2014 at 3:11 PM, Charles Plessy wrote:
you already have commit access to the Debian Med packages, like all other
Debian developers. Please go ahead !
There was adoption of DEP-12 outside of Debian Med and also
that there is no problem with the version number
indicating one thing and the source format indicating another one. So please
revert your change, which solves no practical problems.
Cheers,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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path names.
Hi James,
you already have commit access to the Debian Med packages, like all other
Debian developers. Please go ahead !
Have a nice day,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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://wiki.debian.org/Debate and take a ticket to the TC.
Cheers,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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will lead the transition, or whether you found
somebody elese to do it, or what your plan is if you do not find somebody to do
it ?
Cheers,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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,
I'll gladly do that.
When will you start and when do you plan to finish ? Just do it please.
Cheers,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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are in charge of the Archive, etc. Some may see it more do-o-cratic,
but I find this a step backwards.
Have a nice week-end,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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