Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-15 Thread Andreas Tille
On Sat, Apr 13, 2013 at 09:48:05PM +0200, Anton Gladky wrote: On 04/13/2013 04:18 PM, Dirk Eddelbuettel wrote: So here is where we stand, with little improvement from last week: [1] root@max:/# for p in `apt-cache showpkg r-base-core | \ grep r-base-core 2 | sort | awk -F,

Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-15 Thread Jonathan Dowland
On Sat, Apr 13, 2013 at 09:18:05AM -0500, Dirk Eddelbuettel wrote: Charles, failing that, shall we coordinate off-list? Re-building in chroot takes about a minute or two each but sadly some of these package appear effectively orphaned (eg gpplot2, single upload 15 months ago -- is that really

Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-14 Thread Charles Plessy
Le Sat, Apr 13, 2013 at 09:18:05AM -0500, Dirk Eddelbuettel a écrit : I would be really terrific if the the debian-med, debian-science, debichem teams could update some of these packages. Charles, failing that, shall we coordinate off-list? Re-building in chroot takes about a minute or

Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-13 Thread Dirk Eddelbuettel
So here is where we stand, with little improvement from last week: [1] root@max:/# for p in `apt-cache showpkg r-base-core | \ grep r-base-core 2 | sort | awk -F, '{print $1}'`; \ do echo -n $p,; apt-cache show $p | grep Maintainer | \ sed -e 's/.*//'

Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-13 Thread Anton Gladky
On 04/13/2013 04:18 PM, Dirk Eddelbuettel wrote: So here is where we stand, with little improvement from last week: [1] root@max:/# for p in `apt-cache showpkg r-base-core | \ grep r-base-core 2 | sort | awk -F, '{print $1}'`; \ do echo -n $p,; apt-cache show $p |

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-07 Thread Philip Rinn
On 07.04.2013 03:07, Julian Gilbey wrote: Ah, thanks Chris, I wasn't aware of that! But then it seems to me that the correct lines should be: Build-Depends: ..., r-base-dev, ... [...] Depends: ..., ${R:Depends}, ... as the source package is *not* dependent upon the R version, only the

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-07 Thread Julian Gilbey
On Sun, Apr 07, 2013 at 11:17:31AM +0200, Philip Rinn wrote: On 07.04.2013 03:07, Julian Gilbey wrote: Ah, thanks Chris, I wasn't aware of that! But then it seems to me that the correct lines should be: Build-Depends: ..., r-base-dev, ... [...] Depends: ..., ${R:Depends}, ...

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-07 Thread Dirk Eddelbuettel
On 7 April 2013 at 13:01, Julian Gilbey wrote: | On Sun, Apr 07, 2013 at 11:17:31AM +0200, Philip Rinn wrote: | On 07.04.2013 03:07, Julian Gilbey wrote: | Ah, thanks Chris, I wasn't aware of that! But then it seems to me | that the correct lines should be: | | Build-Depends: ...,

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-06 Thread Julian Gilbey
On Fri, Apr 05, 2013 at 09:04:41PM -0500, Dirk Eddelbuettel wrote: First off, let me apologize. I clearly did this the wrong way and should have contacted -release and -devel beforehand. My bad -- I'm sorry for extra work this created for the release managers and maintainer, particularly at

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-06 Thread Chris Lawrence
On Sat, Apr 6, 2013 at 4:55 PM, Julian Gilbey j...@debian.org wrote: So something doesn't make sense somewhere: if my package doesn't care which version of R it's building against, but R itself cares, then surely there should be some way of querying r-base-dev during the build process to

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-06 Thread Dirk Eddelbuettel
On 6 April 2013 at 19:30, Chris Lawrence wrote: | On Sat, Apr 6, 2013 at 4:55 PM, Julian Gilbey j...@debian.org wrote: | So something doesn't make sense somewhere: if my package doesn't care | which version of R it's building against, but R itself cares, then | surely there should be some way

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-06 Thread Dirk Eddelbuettel
On 6 April 2013 at 21:55, Julian Gilbey wrote: | R print(todo[ order(todo[,2]), ], row.names=FALSE) | pkg maint | r-cran-erm j...@debian.org | r-cran-raschsampler

Re: Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-06 Thread Julian Gilbey
On Sat, Apr 06, 2013 at 07:48:20PM -0500, Dirk Eddelbuettel wrote: | If you're using cdbs and r-cran.mk in debian/rules, you can add | Depends: ${R:Depends} to debian/control to pick up the current binary | dependency. I've migrated almost all of my packages over and it makes | life easier.

Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)

2013-04-05 Thread Dirk Eddelbuettel
First off, let me apologize. I clearly did this the wrong way and should have contacted -release and -devel beforehand. My bad -- I'm sorry for extra work this created for the release managers and maintainer, particularly at this time. R 3.0.0 was released on April 3 as scheduled. As usual, I