Hello, I'm currently packaging a package which contain pdb files.
so I asked the upstream the licences of a few included pdb files, he
sent to me a link took from a mailling list of the database the
files are originating from [1][2]. The follow up is interesting.
the full agreement for instituts
2011/9/26 Picca Frédéric-Emmanuel
frederic-emmanuel.pi...@synchrotron-soleil.fr
Hello, I'm currently packaging a package which contain pdb files.
so I asked the upstream the licences of a few included pdb files, he
sent to me a link took from a mailling list of the database the
files are
Le Mon, 26 Sep 2011 21:03:59 +0800,
lina lina.lastn...@gmail.com a écrit :
Here I might be wrong. But I know someone who handled PDBs before. So I
learned little.
PDB is the abbreviation of the Protein Data Bank.
PDB files just a file, you can touch a.pdb or b.pdb.
But for the PDB ID
Hi,
On Fri, Sep 23, 2011 at 01:55:03PM +0200, Picca Frédéric-Emmanuel wrote:
The Molecular Modelling Toolkit (MMTK) is an Open Source program
library for molecular simulation applications. It provides the most
common methods in molecular simulations (molecular dynamics, energy
minimization,
2011/9/26 Picca Frédéric-Emmanuel
frederic-emmanuel.pi...@synchrotron-soleil.fr
Le Mon, 26 Sep 2011 21:03:59 +0800,
lina lina.lastn...@gmail.com a écrit :
Here I might be wrong. But I know someone who handled PDBs before. So I
learned little.
PDB is the abbreviation of the Protein
Le Mon, 26 Sep 2011 21:14:43 +0800,
lina lina.lastn...@gmail.com a écrit :
It's an identification code.
http://proteopedia.org/wiki/index.php/PDB_identification_code
Like you visited a library, every book has a code. and this library is the
database.
Ok so it is possible to change a pdb
2011/9/26 Picca Frédéric-Emmanuel
frederic-emmanuel.pi...@synchrotron-soleil.fr
Le Mon, 26 Sep 2011 21:14:43 +0800,
lina lina.lastn...@gmail.com a écrit :
It's an identification code.
http://proteopedia.org/wiki/index.php/PDB_identification_code
Like you visited a library, every
Dear list,
Every now and then I package data reduction software for the convenience
of my colleagues at the radio astronomical observatory where I work. The
software is typically written by ourselves or by colleagues at similar
places elsewhere in Europe and freely distributed as source
2011/9/26 Picca Frédéric-Emmanuel
frederic-emmanuel.pi...@synchrotron-soleil.fr:
so for you the .pdb files are DFSGfree ?
There have been PDB-files from the Protein Data Bank in the Debian
archive since at least 1998 (rasmol source package), so including them
should not be a problem in practice.
Hi,
On Mon, Sep 26, 2011 at 03:38:42PM +0200, Michael Olberg wrote:
I have recently run into an interesting problem with one of the software
packages, where I can run the individual steps to generate the package
successfully, but where the use of dpkg-buildpackage fails. In other
words, all
Le Mon, 26 Sep 2011 21:35:32 +0800,
lina lina.lastn...@gmail.com a écrit :
I think this is what you want.
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of
all copyright restrictions and made fully and freely available for both
non-commercial and commercial use.
setting DH_VERBOSE=1 in your debian/rules would help to make it verbose
on the level of debian helper (if that is what you use) so you could see
more details as well
On Mon, 26 Sep 2011, Michael Banck wrote:
will fail with a weird compile error somewhere in the middle of the
build process. It
Le Mon, 26 Sep 2011 16:06:10 +0200,
Picca Frédéric-Emmanuel frederic-emmanuel.pi...@synchrotron-soleil.fr a écrit
:
I think this is what you want.
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of
all copyright restrictions and made fully and freely available for
Picca Frédéric-Emmanuel frederic-emmanuel.pi...@synchrotron-soleil.fr
writes:
I am a little bit concern by this redistribution restriction.
It seems that redistribuing unmodified file is allow but if you modify
a file it is not allow to redistribut it with the same name on the FTP
server.
2011/9/26 Picca Frédéric-Emmanuel
frederic-emmanuel.pi...@synchrotron-soleil.fr
Le Mon, 26 Sep 2011 16:06:10 +0200,
Picca Frédéric-Emmanuel frederic-emmanuel.pi...@synchrotron-soleil.fr a
écrit :
I think this is what you want.
Data files contained in the PDB archive
On Mon, Sep 26, 2011 at 10:48 PM, lina lina.lastn...@gmail.com wrote:
2011/9/26 Picca Frédéric-Emmanuel
frederic-emmanuel.pi...@synchrotron-soleil.fr
Le Mon, 26 Sep 2011 16:06:10 +0200,
Picca Frédéric-Emmanuel frederic-emmanuel.pi...@synchrotron-soleil.fr a
écrit :
I think this is
Le Mon, 26 Sep 2011 22:51:03 +0800,
lina lina.lastn...@gmail.com a écrit :
So DFSGFree or not ?
I am sorry, I don't know what does the DFSGFree mean?
Sorry, I googled DFSGFree no result, but DFSG has result. This is the first
time I met this term.
In fact a DFSG free license is a
Hi,
In particular the environment variables to set are generated by
dpkg-architecture -s and dpkg-buildflags --export, so you might
run those commands to see exactly what dpkg-buildpackage was injecting
into your environment.
However, as previously noted, from dpkg-dev 1.16.1 (uploaded last
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