Bug#1063124: libccp4: NMU diff for 64-bit time_t transition

2024-04-25 Thread Andrius Merkys
Hi, On Mon, 05 Feb 2024 07:52:37 + Steve Langasek wrote: If you have any concerns about this patch, please reach out ASAP. Although this package will be uploaded to experimental immediately, there will be a period of several days before we begin uploads to unstable; so if information

Bug#1068708: Building with EPICS fails because the compiler cannot find `compilerSpecific.h`.

2024-04-10 Thread Andrius Merkys
Hi Florian, On 2024-04-10 16:40, Florian Forster wrote: pkg-config references paths (/build/reproducible-path/…) that likely exist on the build system, but are not provided by the package: ``` # pkg-config epics-base --cflags | sed -e 's/  */\n/g'

Bug#1059706: epics-base.pc is still broken

2024-04-10 Thread Andrius Merkys
control: reopen -1 control: found -1 7.0.8+dfsg1-1 Hello, As epics-base.pc still contains incorrect paths, I am reopening this bug. Andrius -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1068708: Building with EPICS fails because the compiler cannot find `compilerSpecific.h`.

2024-04-10 Thread Andrius Merkys
Hi Florian, On 2024-04-09 16:38, Florian Forster wrote: Building with EPICS fails because the compiler cannot find `compilerSpecific.h`: ``` In file included from /usr/include/epics/epicsThread.h:62, from /usr/include/epics/cadef.h:35, from src/epics.c:26:

Bug#1061357: python3-spglib: spglib python package not identified by dh_python3

2024-02-06 Thread Andrius Merkys
Hi, On 2024-01-23 01:18, Drew Parsons wrote: But I notice that python3-spglib doesn't provide the .dist-info directory that most other python packages provide. I guess dh-python is using the dist-info mechanism to identify packages. Perhaps we should file a bug against dh-python for it to run

Bug#1061357: spglib: buildsystem could be switched to scikit-build-core

2024-01-24 Thread Andrius Merkys
Hi, On 2024-01-23 09:32, Andrius Merkys wrote: I think both #1061263 and #1061357 could be solved by switching spglib's buildsystem to one based on scikit-build-core, as its pyproject.toml supports that. I made an attempt to build spglib with scikit-build-core by specifying '--buildsystem

Bug#1061263: spglib: buildsystem could be switched to scikit-build-core

2024-01-22 Thread Andrius Merkys
Hi, I think both #1061263 and #1061357 could be solved by switching spglib's buildsystem to one based on scikit-build-core, as its pyproject.toml supports that. Andrius -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1061263: python3-spglib: fails with python3.12 (extension not built)

2024-01-22 Thread Andrius Merkys
Hi Drew, On 2024-01-21 19:32, Drew Parsons wrote: Package: python3-spglib Version: 2.2.0-2 Severity: normal python3-spglib fails with python3.12, since the python extension is built only for python3.11. Yes, for the time being, spglib builds for default Python only. spglib should be

Bug#1058127: python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?

2024-01-16 Thread Andrius Merkys
Hi Yogeswaran, On 2024-01-16 03:43, Yogeswaran Umasankar wrote: I have removed the hard-coded version number from setup.py. I found that the issue was due to changes in PEP440 version naming convention in versioneer. For this package no need python3-versioneer, upstream has its own

Bug#1058127: python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?

2024-01-15 Thread Andrius Merkys
Hi Yogeswaran, On 2024-01-14 18:46, Yogeswaran Umasankar wrote: I created a patch for fixing AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. In the process I have updated it to the latest upstream too. I’ve attached the debdiff for you to check out. I noticed you

Bug#1059706: epics-base.pc is broken in epics-dev package

2023-12-30 Thread Andrius Merkys
Control: tags -1 + confirmed Hi, On 2023-12-30 18:06, Matwey V. Kornilov wrote: Package: epics-dev Version: 7.0.7+dfsg1-5 Please note, that epics-base.pc file is installed into /usr/share/pkg-config instead of /usr/share/pkgconfig and cannot be found. I have just fixed this in the packaging

Bug#1059175: dials: FTBFS: Imported target "DXTBX::DXTBX" includes non-existent path

2023-12-20 Thread Andrius Merkys
Control: tags -1 + patch pending Hi, On 2023-12-21 00:42, Sebastian Ramacher wrote: Source: dials Version: 3.12.1+dfsg3-5 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past) X-Debbugs-Cc: sramac...@debian.org

Bug#1056241: dials autopkg tests fail with Python 3.12

2023-11-22 Thread Andrius Merkys
Hi, On 2023-11-19 13:42, Matthias Klose wrote: dials autopkg tests fail with Python 3.12: [...] 548s E   FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.12' 548s === short test summary info 548s ERROR  -

Bug#1055896: cod-tools: FTBFS: source.c:33:5: error: ‘SPGCONST’ undeclared (first use in this function); did you mean ‘OP_CONST’?

2023-11-14 Thread Andrius Merkys
Control: owner -1 ! Hi, On 2023-11-14 14:27, Gianfranco Costamagna wrote: https://github.com/cod-developers/cod-tools/commit/2e9c0aaa367366883105fa9a7ba3d965495700f8 Just removing SPGCONST from the source.c file is enough, trivial patch attached: Sadly I opened an upstream PR before

Bug#1054433: node-puppeteer: website is build with Docusaurus not packaged for debian

2023-10-24 Thread Andrius Merkys
Hi, On 2023-10-23 22:06, Bastien Roucariès wrote: Source: fasttext Source package names in Subject and Source do not match. Please retitle if this is not intentional. Best, Andrius -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Re: RFP: SAIL image decoding library

2023-10-17 Thread Andrius Merkys
Hi Dmitry, On 2023-10-17 16:25, Dmitry Baryshev wrote: > Does it produce desired Debian packages? I've just pushed a couple of fixes to the Debian rules. I'm able to build packages on LUbuntu 23.04. Maybe a couple of small fixes are still needed to build packages on Debian. So the

Re: RFP: SAIL image decoding library

2023-10-17 Thread Andrius Merkys
Hi Dmitry, On 2023-10-17 13:29, Dmitry Baryshev wrote: It would be great to have SAIL in Debian, at least in experimental. It's a C/C++ image decoding library similar to FreeImage. It's already available in Conan and VCPKG with thousands of installations. Website: https://sail.software/

Bug#1052888: epics-base: FTBFS: make[2]: *** [configure/RULES_TOP:62: runtests] Error 1

2023-10-10 Thread Andrius Merkys
Control: tags -1 + unreproducible On Tue, 26 Sep 2023 15:34:01 +0200 Lucas Nussbaum wrote: Source: epics-base Version: 7.0.7+dfsg1-5 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230925 ftbfs-trixie Hi, During a rebuild of all packages

Bug#1049872: armel and armhf excluded from asmjit architectures

2023-09-30 Thread Andrius Merkys
control: severity -1 normal Hello, In 0.0~git20230914.917f19d-1 I have excluded armel and armhf architectures from the list of architectures asmjit is built upon. Thus I think the severity should be normal now. Andrius -- debian-science-maintainers mailing list

Bug#1049872: FTBFS on multiple release architectures

2023-09-13 Thread Andrius Merkys
Hi Emanuele, On 2023-09-11 12:07, Emanuele Rocca wrote: On 2023-09-09 08:38, Andrius Merkys wrote: This is news to me. Could you please point out where in Debian Policy I can read more about such requirement? I thought I saw packages dropping support for one or another release architecture

Bug#1049872: FTBFS on multiple release architectures

2023-09-08 Thread Andrius Merkys
Hi Emanuele, On 2023-09-05 16:58, Emanuele Rocca wrote: On 2023-08-28 07:42, Andrius Merkys wrote: On Wed, 16 Aug 2023 14:29:10 +0200 Emanuele Rocca wrote: asmjit does not build correctly on the following architectures: armel, armhf, mips64el, mipsel, s390x. Does this constitute an RC bug

Bug#1049872: FTBFS on multiple release architectures

2023-08-28 Thread Andrius Merkys
Hi, On Wed, 16 Aug 2023 14:29:10 +0200 Emanuele Rocca wrote: asmjit does not build correctly on the following architectures: armel, armhf, mips64el, mipsel, s390x. Does this constitute an RC bug? If not, severity should be lowered. Thanks, Andrius -- debian-science-maintainers mailing list

Bug#1039917: [Debichem-devel] Bug#1039917: gemmi breaks finalcif autopkgtest: causes autopkgtest timeout

2023-06-29 Thread Andrius Merkys
Hi, On 2023-06-29 17:06, Paul Gevers wrote: With a recent upload of gemmi the autopkgtest of finalcif fails in testing when that autopkgtest is run with the binary packages of gemmi from unstable. It passes when run with only packages from testing. In tabular form:   

Bug#1039087: epic-base: embed yajl

2023-06-27 Thread Andrius Merkys
Hi, On Sun, 25 Jun 2023 15:02:18 + =?utf-8?q?Bastien_Roucari=C3=A8s?= wrote: Your package embed a copy of yajl. I agree with un-embedding. Could you: - compile against the packaged yajl package I spent some time trying, but did not find an unintrusive way to do so. Adding

Bug#1016958: epics-base: FTBFS without network access

2023-02-28 Thread Andrius Merkys
Hello, On 2023-02-28 12:57, Santiago Vila wrote: Hello. Merely trying network access is already considered RC, so this should really be serious. (I would be willing to test a fix if somebody proposes one). This particular test seems to attempt to communicate to a locally running server

Re: parallel-hashmap_1.3.8+ds-1_amd64.changes REJECTED

2023-02-27 Thread Andrius Merkys
Hi, On 2023-02-24 21:00, Thorsten Alteholz wrote: please also mention Daniel James and the Boost license in your debian/copyright. Thanks for the hint! I have fixed this and reuploaded. Best wishes, Andrius -- debian-science-maintainers mailing list

Bug#1027215: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-01-16 Thread Andrius Merkys
Hello, On 2023-01-14 13:12, Rebecca N. Palmer wrote: theano has been mostly abandoned upstream since 2018.  (The Aesara fork is not abandoned, but includes interface changes including the import name, so would break reverse dependencies not specifically altered for it.) Its reverse

Bug#1026011: scilab: replace liblucene4.10-java with liblucene8-java

2022-12-13 Thread Andrius Merkys
Source: scilab Version: 6.1.1+dfsg2-4 Hello, scilab build-depends on liblucene4.10-java while it declares compatibility with lucene up to 8.4.0 (see scilab/CHANGES.md). Debian has lucene 8.8.1 packaged as liblucene8-java, which is later than 8.4.0 but is worth trying (I did not try due to

Bug#1024526: simbody: FTBFS on ppc64el, mips64el

2022-12-04 Thread Andrius Merkys
Control: severity -1 important The upstream says this is a bug in optimization, but they do not have access to these architectures. For now I have RMed the binaries of ppc64el and mips64el, thus the package should be allowed to migrate to testing without them for the time being. Andrius --

Re: python-pymbar_3.1.0-1_amd64.changes REJECTED

2022-10-24 Thread Andrius Merkys
Hi Thorsten, On 2022-10-04 21:00, Thorsten Alteholz wrote: please also mention at least: The Regents of the University of California Stanford University and Columbia University University of Virginia University of Colorado Boulder, Memorial Sloan Kettering Cancer Center in your

Bug#1016958: FTBFS: epics-base

2022-10-17 Thread Andrius Merkys
control: retitle -1 epics-base: FTBFS without network access control: severity -1 important On Wed, 10 Aug 2022 16:51:20 +0200 Sven Mueller wrote: We ran into a build failure of epics-base in Debian testing during rebuilds, but it seems the same error also occurs in the reproducible builds

Bug#1012498: finalcif: FTBFS with python3-gemmi 0.5.5+ds

2022-06-08 Thread Andrius Merkys
Source: finalcif Version: 104+dfsg-1 Severity: serious Tags: ftbfs finalcif FTBFS with python3-gemmi 0.5.5+ds: self = @property def is_centrosymm(self) -> bool: """ Whether a structuere is centro symmetric or not. """ if not self.symmops or self.symmops

Bug#1011928: patch available

2022-06-07 Thread Andrius Merkys
Control: tags -1 + patch Hello, I can confirm the FTBFS with libtbb-dev/2021.5.0-9 in experimental. However, trilinos can be compiled without TBB by removing the following from configure step in debian/rules: -DTPL_ENABLE_TBB:BOOL=ON With this removed trilinos built fine in experimental.

Bug#1012128: opencascade: FTBFS with onetbb/2021.5.0-8 in experimental

2022-05-30 Thread Andrius Merkys
Source: opencascade Version: 7.5.1+dfsg1-2 Severity: normal Tags: ftbfs Hello, tbb/onetbb transition (#1007222) is currently in the planning. During test rebuild of libtbb-dev reverse dependencies with onetbb/2021.5.0-8 in experimental, current source failed to build with the following: [ 0%]

Bug#1012126: deal.ii: FTBFS with onetbb/2021.5.0-9 in experimental

2022-05-30 Thread Andrius Merkys
Source: deal.ii Version: 9.3.2-1 Severity: normal Tags: ftbfs Hello, tbb/onetbb transition (#1007222) is currently in the planning. During test rebuild of libtbb-dev reverse dependencies with onetbb/2021.5.0-9 in experimental, current source failed to build with the following: -- Include

Bug#1011750: gazebo: FTBFS with onetbb/2021.5.0-9 in experimental

2022-05-26 Thread Andrius Merkys
Source: gazebo Version: 11.10.1+dfsg-2 Severity: normal Tags: ftbfs Hello, tbb/onetbb transition (#1007222) is currently in the planning. During test rebuild of libtbb-dev reverse dependencies with onetbb/2021.5.0-9 in experimental, current source failed to build with the following: [ 42%]

Bug#1011112: onetbb: FTBFS on mips64el/mipsel: libtbbmalloc is not built

2022-05-17 Thread Andrius Merkys
Source: onetbb Version: 2021.5.0-8 Severity: important Tags: ftbfs Hello, onetbb seemingly does not provide libtbbmalloc for mips* architectures. >From CMakeLists.txt: if (NOT "${CMAKE_SYSTEM_PROCESSOR}" MATCHES "mips") if (TBBMALLOC_BUILD)

Bug#1006920: please split out a libtbbmalloc2 package, both in tbb and onetbb

2022-05-13 Thread Andrius Merkys
Hi, On 2022-05-13 01:32, M. Zhou wrote: > Yes. If you have time to handle it please go ahead. > I'm suffering from a recent paper submission deadline, > so I'm only able to build and upload some small packages > that can be built on my weak laptop. > The paper deadline is May 19. After that I

Bug#1006920: please split out a libtbbmalloc2 package, both in tbb and onetbb

2022-05-12 Thread Andrius Merkys
Hello, Can we proceed with splitting out libtbbmalloc2 if there are no blockers? tbb/onetbb transition is blocking quite some packages, it would be nice to deal with all of them until the freeze. Best, Andrius -- debian-science-maintainers mailing list

Bug#1009191: cctbx: please re-enable building on riscv64

2022-05-02 Thread Andrius Merkys
Hi, On 2022-04-30 13:29, Neil Williams wrote: >> Neil, is there a particular reason riscv64 support was disabled in >> 2021.12+ds1-3? > I didn't see it as particularly likely that any real-world usage of > cctbx was manageable on any current RISCV64 hardware. Thanks for explanation. I usually

Bug#1009191: cctbx: please re-enable building on riscv64

2022-04-30 Thread Andrius Merkys
Hello, On 2022-04-08 17:57, Graham Inggs wrote: > Building on riscv64 was silently disabled in 2021.12+ds1-3. > 2021.12+ds1-2 built successfully in the past [1], and 2021.12+ds1-4 > continues to build in Ubuntu. > > Please re-enable building on riscv64 as we would like to promote > riscv64 to a

Bug#1006920: please split out a libtbbmalloc2 package, both in tbb and onetbb

2022-04-25 Thread Andrius Merkys
Hi Andreas, On 2022-04-23 14:21, Andreas Metzler wrote: >> After that, build fails at dh_shlibdeps step: >>dh_shlibdeps >> dpkg-shlibdeps: error: cannot find library libtbbmalloc.so.2 needed by >> debian/libtbbmalloc2/usr/lib/${DEB_HOST_MULTIARCH}/libtbbmalloc_proxy.so.2 >> (ELF format:

Bug#1006920: please split out a libtbbmalloc2 package, both in tbb and onetbb

2022-04-22 Thread Andrius Merkys
Hello, For me tbb 2020.3-1 fails to build in sid chroot with tbb.diff applied. First of all, build runs into missing symbols. I managed to get past this by removing them: --- a/debian/libtbbmalloc2.symbols.amd64 +++ b/debian/libtbbmalloc2.symbols.amd64 @@ -2,8 +2,6 @@ libtbbmalloc.so.2

Re: Install fenics from ppa on Ubuntu 20.04

2021-11-30 Thread Andrius Merkys
Hi, On 2021-11-26 16:39, Sebastian Dransfeld wrote: > I only saw the errors, and assumed it wouldn't work. So I "fixed" it without > testing fenics, and just wanted to notify:) Thanks for the report. I have submitted a bug report on the package dropping these errors:

Bug#1000950: python3-mshr: error processing line 3 of /usr/lib/python3/dist-packages/mshr.pth

2021-11-30 Thread Andrius Merkys
Package: python3-mshr Version: 2019.2.0~git20200924.c27eb18+dfsg1-7 Hello, When installing python3-mshr in clean sid chroot, the following message is displayed multiple times: """ Error processing line 3 of /usr/lib/python3/dist-packages/mshr.pth: Traceback (most recent call last): File

Bug#1000633: 1000633: nice to have

2021-11-26 Thread Andrius Merkys
Control: severity -1 wishlist Hello, Actually, simbody does not block macromoleculebuilder v3.5. Nevertheless it would be nice to have the newest simbody. Best, Andrius -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1000633: simbody: please package v3.7

2021-11-26 Thread Andrius Merkys
Source: simbody Hello, I saw that salsa contains packaging for simbody v3.7, but it does not seem to be uploaded. Are there any blockers for that? I need simbody v3.7 to update macromoleculebuilder. Best, Andrius -- debian-science-maintainers mailing list

Re: Install fenics from ppa on Ubuntu 20.04

2021-11-25 Thread Andrius Merkys
Hi Sebastian, On 2021-11-23 16:00, Sebastian Dransfeld wrote: > Installed fenics with «apt get fenics», and it fails because it cannot > find /usr/lib/petsc/include/petscconf.h. This file is provided by > libpetsc-real-dev, but it is provided by alternatives. So it isn’t > available until this

Bug#973513: 973513: confirmed

2021-11-09 Thread Andrius Merkys
Version: 3.6.0-1 Control: tags -1 + confirmed Hello, I can confirm that at least python3-gi and libgtk-3-dev are required to run gpu-mon. Since libgtk-3-dev brings a lot of other dependencies, it may need some narrowing down. Andrius -- debian-science-maintainers mailing list

Bug#995133: python3-gpumodules: Error parsing amdfeaturemask

2021-09-26 Thread Andrius Merkys
Control: fixed 995133 3.6.0 Control: tags 995133 + fixed-upstream pending Hi, On 2021-09-27 00:04, Gregor Riepl wrote: > gpu-pac currently fails on my system because of a hex string parsing issue in > python3-gpumodules: > > Traceback (most recent call last): > File "/usr/bin/gpu-pac", line

Bug#984346: 984346: fixed in new upstream release

2021-09-06 Thread Andrius Merkys
control: fixed 984346 1.0.4-1 control: tags 984346 + fixed-upstream Hello, I tried to reproduce the bug with new upstream release, 1.0.4, and it seems that it is gone now. Best, Andrius -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#989954: cif-api FTCBFS: uses the build architecture pkg-config

2021-06-17 Thread Andrius Merkys
Hi Helmut, On 2021-06-16 17:49, Helmut Grohne wrote: > cif-api fails to cross build from source, because the upstream configure > script uses the build architecture pkg-config. The simple solution is to > replace the relevant AC_PATH_PROG with AC_PATH_TOOL. A better solution > would likely be

Bug#989399: nauty FTCBFS -- multiple reasons

2021-06-03 Thread Andrius Merkys
Hi Nilesh, On 2021-06-03 13:05, Nilesh Patra wrote: > On Thu, 3 Jun 2021 at 13:10, Andrius Merkys <mailto:mer...@debian.org>> wrote: > On 2021-06-02 19:29, Nilesh Patra wrote: > > Nauty fails to cross build due to two reasons: > > > > 1. It uses A

Bug#989399: nauty FTCBFS -- multiple reasons

2021-06-03 Thread Andrius Merkys
Hi Nilesh, On 2021-06-02 19:29, Nilesh Patra wrote: > Nauty fails to cross build due to two reasons: > > 1. It uses AC_RUN_IFELSE testing which cannot heppen during cross build >Simply replacing it by AC_LINK_IFELSE does the trick. Please find the >patch for this below, and consider

Bug#987580: libnauty2-dev: suggest include gentreeg.c source (like geng.c)

2021-04-26 Thread Andrius Merkys
Control: tags -1 + confirmed Control: owner -1 ! On 2021-04-26 04:24, Kevin Ryde wrote: > It'd be good if the libnauty2-dev included the gentreeg.c source in > /usr/share/nauty, together with geng.c. gentreeg.c has a GENTREEG_MAIN > option so can be compiled to make trees within a user program.

Bug#986785: binoculars gui does not work

2021-04-12 Thread Andrius Merkys
Hi, On 2021-04-12 10:42, Picca Frédéric-Emmanuel wrote: > $ binoculars-gui > Warning: Ignoring XDG_SESSION_TYPE=wayland on Gnome. Use > QT_QPA_PLATFORM=wayland to run on Wayland anyway. > /usr/bin/binoculars-gui:1276: DeprecationWarning: In future, it will be an > error for 'np.bool_' scalars

Bug#985339: nauty: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2021-03-26 Thread Andrius Merkys
Hi Andreas, On 2021-03-25 09:39, Andreas Beckmann wrote: > On 24/03/2021 22.59, Andrius Merkys wrote: >> However, I am not sure how to proceed next. In principle I could tinker >> with maintscripts, but I am not sure how to instruct piuparts to pick my >> .deb instead of wh

Bug#985339: nauty: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2021-03-25 Thread Andrius Merkys
On 2021-03-17 00:51, Andreas Beckmann wrote: > The following should catch both cases: > > symlink_to_dir /usr/share/doc/nauty /usr/share/doc/libnauty2 2.7r1+ds-2~ I have applied the fix suggested by Andreas, and managed to get piuparts checks passing locally. Uploaded the fixed package. Best,

Bug#985339: nauty: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2021-03-24 Thread Andrius Merkys
Hello, On 2021-03-24 15:58, Torrance, Douglas wrote: > Has there been any progress on this bug? I'm not sure how to reproduce > it, but I'd be happy to help in any way that I can. nauty and its > reverse dependencies have been marked for auto-removal on Apr. 29 > because of it. I managed to

Bug#985339: nauty: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2021-03-17 Thread Andrius Merkys
On 2021-03-17 00:51, Andreas Beckmann wrote: > On 16/03/2021 16.05, Andrius Merkys wrote: >> symlink_to_dir /usr/share/doc/nauty libnauty2 2.7r1+ds-1~ > > That looks correct. Thanks for confirming. >>  From this I gather that upgrades of nauty <= 2.7r1+ds-1 to this new &

Bug#985339: nauty: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2021-03-16 Thread Andrius Merkys
Hello, On 2021-03-16 12:39, Andreas Beckmann wrote: > 1m40.0s ERROR: FAIL: silently overwrites files via directory symlinks: > /usr/share/doc/nauty/changelog.Debian.gz (nauty) != > /usr/share/doc/libnauty2/changelog.Debian.gz (libnauty2:amd64) > /usr/share/doc/nauty ->

Bug#977293: Read .xlsx from stdin, write .csv to stdout

2020-12-28 Thread Andrius Merkys
Hi Sébastien, On 2020-12-28 15:14, Sébastien Hinderer wrote: > Actually, > > xlsx2csv foo.xlsx > > does write the CSV output on stdout. Glad the upstream answered your question. > I think this bug report can now be closed. How about reading from stdin? Can you confirm that /dev/stdin does

Bug#978503: etsf-io: uscan fails due to gone download page

2020-12-27 Thread Andrius Merkys
Source: etsf-io Version: 1.0.4-5 Severity: normal Old download page of etsf-io is now gone [1], as etsf-io seems to have switched to GitHub [2]. However, the releases are not tagged there, thus fetching tarballs with meaningful version numbers is impossible for the time being. I have opened an

Bug#977293: Read .xlsx from stdin, write .csv to stdout

2020-12-27 Thread Andrius Merkys
reopen 977293 forwarded https://github.com/dilshod/xlsx2csv/issues/213 thanks Dear Sébastien, On 2020-12-27 18:16, Sébastien Hinderer wrote: > Andrius Merkys (2020/12/14 08:16 +0200): >> Have you tried using /dev/stdin and /dev/stdout on the command line? >> This usually

Bug#977293: Read .xlsx from stdin, write .csv to stdout

2020-12-13 Thread Andrius Merkys
Hello, On 2020-12-13 19:00, Sebastien Hinderer wrote: > Dear upstream authors, Debian is not the upstream of this package. Bug reports filed in Debian BTS are not automatically forwarded to upstream either. To contact the upstream, I suggest opening an issue on their GitHub issue tracker [1]. >

Bug#957665: Fortran issue in paw (Was: paw: ftbfs with GCC-10)

2020-10-15 Thread Andrius Merkys
Hi Andreas, On 2020-10-15 15:26, Andreas Tille wrote: > when trying to build paw with gcc / fortran 10 there are some FORTRAN > errors: > > > ... > Error: Type mismatch between actual argument at (1) and actual argument at > (2) (COMPLEX(4)/INTEGER(4)). >

Re: RFS: benchmark_1.5.0-1

2019-09-20 Thread Andrius Merkys
uploading permissions: > > dcut dm --uid 724D609337113C710550D7473C26763F6C67E6E2 --allow benchmark > > Thanks! > > -- > Michael R. Crusoe > -- Andrius Merkys Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 LT-10257 Vilnius, Lithuania -- debian-

Bug#927140: getdp compiled without support for gmsh

2019-04-15 Thread Andrius Merkys
Hello, it seems that getdp wants to be linked with private gmsh API, which is not installed by Debian packages yet [1]. [1] https://packages.debian.org/sid/alpha/libgmsh-dev/filelist Best, Andrius On Mon, 15 Apr 2019, 16:33 boffi, wrote: > Package: getdp > Version: 3.0.4+dfsg1-1 > Severity:

Bug#913455: spglib breaks cod-tools autopkgtest

2018-11-12 Thread Andrius Merkys
>> _cell_angle_beta 89.999996 >> _cell_angle_gamma119.95327 > 24,25c24,25 > < Ac 0. 0.6667 0.6667 > < Ac 0.6667 0. 0. > --- >> Ac 0.6667 0. 0.

Bug#903689: cod-tools: missing build-depends

2018-07-13 Thread Andrius Merkys
d bug. I will upload it soon. Best wishes, Andrius [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=903666 -- Andrius Merkys Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 LT-10257 Vilnius, Lithuania -- debian-science-maintainers mailing list debian-s

Bug#902745: clipper: please make the build reproducible

2018-07-01 Thread Andrius Merkys
o it's not very useful for end-users anyway...) Hi, thanks for the patch! I have incorporated it, the fixed package is ready to be uploaded (I don't have privileges myself). Best wishes, Andrius -- Andrius Merkys Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 L

Bug#901997: python-pycodcif has unsatisfiable dependencies

2018-06-21 Thread Andrius Merkys
librarian.net/375388523/cod-tools_2.1+dfsg-1_2.1+dfsg-1ubuntu1.diff.gz > this is already fixed and waiting for sponsor to be uploaded. Many thanks! Andrius -- Andrius Merkys Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 LT-10257 Vilnius, Lithuania -- debian-science-m

Bug#901060: lammps: generate irreducible q-points with spglib

2018-06-08 Thread Andrius Merkys
Package: lammps Severity: wishlist lammps has an optional feature to generate irreducible q-points set via spglib, which is now packaged in Debian. I attach a patch to enable this feature. lammps must build-depend on libsymspg-dev in order to use it. Best, Andrius -- Andrius Merkys Vilnius

Bug#901047: debian-science: s/spglib/libsymspg-dev/

2018-06-08 Thread Andrius Merkys
Package: src:debian-science Version: 1.7 Please replace spglib with libsymspg-dev, since this is the libdevel package from spglib source. Thanks, Andrius -- Andrius Merkys Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 LT-10257 Vilnius, Lithuania -- debian

Re: spglib_1.10.3-1_amd64.changes REJECTED

2018-05-16 Thread Andrius Merkys
them in your debian/copyright. > > Thanks! > Thorsten > > > > === > > Please feel free to respond to this email if you don't understand why > your files were rejected, or if you upload new files which address our > concerns. > -- Andrius Merkys Vilnius Univers