[Freesurfer] SynthSR

2022-10-07 Thread AJ
External Email - Use Caution Can SynthSR be used on MRI scans of subjects with T2 lesions, such as MS? If yes, is their a way to save the masks of lesions that were Inpainted or their volume? For the output files, what are their image parameters such as TR, TE, TI? Thank you,

[Freesurfer] fft

2022-10-07 Thread Proulx, Jean Sebastien
Hello, Is there an easy way to perform fast fourier transform (fft) or other fancier spectral analysis with freesurfer tools (e.g. with mris_calc)? Thanks and Have a good day! Sebastien ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Hemisphere in Yellow

2022-10-07 Thread Wang, Ruopeng
Would it be possible to send me the overlay file? On Oct 7, 2022, at 1:27 PM, Jun Yeon Won mailto:wo...@umd.edu>> wrote: External Email - Use Caution Hi Ruopeng, I tried to adjust overlay thresholds in the Configure Overlay window, but I think it still looks weird. The gray part

[Freesurfer] Specify random seed with recon-all

2022-10-07 Thread Elizabeth Kenneally
External Email - Use Caution Hi FreeSurfer Developers, I’m trying to run FreeSurfer with a specified random seed with recon-all. I found the -rng-seed flag, but it seem to have been deprecated. I also found the -randomness flag, but I was hoping to specify the random seed

[Freesurfer] Parcellating Individuals using Yeo17Networks Atlas

2022-10-07 Thread Remiszewski, Natalie
External Email - Use Caution Hi all, I have a dataset of structural MRIs that I have previously used FS on to parcellate into the DKT and Destrieux atlases. I am interested in parcellating and getting cortical thickness values using the yeo17networks atlas. Is there a way to

Re: [Freesurfer] Freeview does not show images

2022-10-07 Thread fsbuild
External Email - Use Caution Did it say the driver was installed successfully? I’m wondering if the driver did not install because it does not support your machines hardware for some reason. But it should tell you if it cannot be installed. You can tell if the DCH driver is

Re: [Freesurfer] Freeview does not show images

2022-10-07 Thread Justina Lee
External Email - Use Caution Hi Ruopeng, I tried to run the glxgears command in the WSL Ubuntu subsystem, but it doesn't show me the gears. I am having the same issue as this thread linked here: