[Paraview] Some more questions on animation

2014-02-24 Thread Jesse Samluk
Greetings all,

  I'm trying to make several animations that involve the use of the same camera 
values in the Animation Keyframes. In so doing, is it possible to simply cut 
and paste the values to other animations? If so, how do I go about doing that?

  Also, what is the best way to export the animations to Powerpoint?

Thanks!
 Jesse 
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[Paraview] Particles-in-Cells: Two XDMF files?

2014-02-24 Thread Huebl, Axel
Hi ParaView mailing list,


we are adding paraview/xdmf support to our particle-in-cell code
PIConGPU [1] right now. To start with the general topology:

The particle in cell algorithm stores field data (scalars and vectors)
on a grid, in the simplest case a 3DCoRectMesh. In between the mesh
points live particles, described with a Polyvertex topology.

The problem that now arises: we would like to describe both grid and
polyvertex data in the *same xdmf file*.

Doing so, e.g. by combining them on the Domain level in two separate
Temporal Collections causes ParaView to refuse volume-rendering the
fields (not available in the drop down menu).
Adding two Domains to one file causes ParaView to omit the second data
domain during load.
Adding both grid types in the same Temporal Collection causes a crash.

Do we really have to write two xdmf files or did we miss a point?

A snippet of our data structures, stored in a hdf5 file per time step:

?xml version=1.0 ?
Xdmf
  Domain
Grid CollectionType=Temporal GridType=Collection Name=Grids
  Grid GridType=Uniform Name=Grid_0_0
Topology Dimensions=256 768 256 TopologyType=3DCoRectMesh/
Geometry Type=ORIGIN_DXDYDZ
  DataItem Dimensions=3 Format=XML0.0 0.0 0.0/DataItem
  DataItem Dimensions=3 Format=XML1.0 1.0 1.0/DataItem
/Geometry
Attribute Name=fields/Density_e
  DataItem Dimensions=256 768 256 Format=HDF
NumberType=Float Precision=4h5_0.h5:Density_e/DataItem
/Attribute
  /Grid
  !--  --
/Grid
  /Domain
/Xdmf

and the particles:

Xdmf
  Domain
Grid CollectionType=Temporal GridType=Collection Name=Polys
  Grid GridType=Uniform Name=Poly_0_0
Topology NodesPerElement=94109696 TopologyType=Polyvertex/
Attribute Name=particles/e/weighting
  DataItem Dimensions=94109696 Format=HDF
NumberType=Float Precision=4h5_0.h5:weighting/DataItem
/Attribute
Time TimeType=Single Value=0/
Attribute AttributeType=Vector Name=particles/e/momentum
  DataItem Dimensions=94109696 3 Function=JOIN($0,$1,$2)
ItemType=Function
DataItem Dimensions=94109696 Format=HDF
NumberType=Float Precision=4h5_0.h5:momentum/x/DataItem
DataItem Dimensions=94109696 Format=HDF
NumberType=Float Precision=4h5_0.h5:momentum/y/DataItem
DataItem Dimensions=94109696 Format=HDF
NumberType=Float Precision=4h5_0.h5:momentum/z/DataItem
  /DataItem
/Attribute
  /Grid
  !--  --
/Grid
  /Domain
/Xdmf


Best regards and thanks for your Feedback,
Axel Huebl

[1] http://picongpu.hzdr.de
-- 
.
. Axel Huebl   - Diploma Student.
. a.hu...@hzdr.de  - Phone +49 351 260 3582 .
.https://www.hzdr.de/crp.
.   .
. Computational Radiation Physics   .
. Laser Particle Acceleration Division  .
. Helmholtz-Zentrum Dresden - Rossendorf e.V.   .
.   .
. Bautzner Landstrasse 400, 01328 Dresden   .
. POB 510119, D-01314 Dresden   .
. Vorstand: Prof. Dr.Dr.h.c. R. Sauerbrey   .
.   Prof. Dr.Dr.h.c. P. Joehnk  .
. VR 1693 beim Amtsgericht Dresden  .
.







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Re: [Paraview] Some more questions on animation

2014-02-24 Thread Utkarsh Ayachit
   I'm trying to make several animations that involve the use of the same 
 camera values in the Animation Keyframes. In so doing, is it possible to 
 simply cut and paste the values to other animations? If so, how do I go about 
 doing that?

Jesse, I'd suggest using Python tracing capabiltiies to capture the
state of the animation and then replaying that python trace on each of
the animations. You could also save Python state out then extract
animation related state from the state file and replay that.

   Also, what is the best way to export the animations to Powerpoint?

Saving it out as an avi (or a series of png images that you stitch
together using some other tool) is probably your best bet.

Utkarsh
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[Paraview] PDF export missing colors

2014-02-24 Thread David Lonie
Conversation moved here from:

http://www.kitware.com/blog/home/post/508

Jon,

In the Coloring section of the Properties tab, what is selected in the
drop-down box?

Also, is Interpolate Scalars Before Mapping enabled?

Dave
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[Paraview] VTK accepted for Google Summer of Code

2014-02-24 Thread Marcus D. Hanwell
Hi,

I am very pleased to announce that VTK has been accepted as a
mentoring organization in this year's Google Summer of Code! Our ideas
page is http://vtk.org/Wiki/VTK/GSoC_2014, and we would be happy to
discuss other ideas and may add more during the student application
period.

Interested students, please get in touch on our mailing lists. We
would encourage you to interact with our community during the
application period. Jeff Baumes and I are the administrators for the
organization, and mentors who proposed ideas are listed next to the
ideas on the wiki page.

If you know any students interested in taking part this year please
encourage them to get in touch early. We are looking forward to a
productive summer!

Marcus
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Re: [Paraview] Build errors compiling Paraview with VS2013

2014-02-24 Thread Bruce Jones
Hi,

I just found the solution, my build of QT was not build with webkit
support. checking PQWIDGETS_DISABLE_QTWEBKIT in cmake solved the problem.

Cheers,
Bruce


On Fri, Feb 21, 2014 at 1:37 PM, Bruce Jones bruce.david.jo...@gmail.comwrote:

 Hey,

 Adding #include algorithm solved those errors. The only project that
 wont build now is pqWidgets, its giving me 54 errors like this one,

 Error 23 error LNK2019: unresolved external symbol __declspec(dllimport)
 public: class QNetworkAccessManager * __cdecl
 QWebPage::networkAccessManager(void)const 
 (__imp_?networkAccessManager@QWebPage@@QEBAPEAVQNetworkAccessManager@@XZ)
 referenced in function public: __cdecl pqHelpWindow::pqHelpWindow(class
 QHelpEngine *,class QWidget *,class QFlagsenum Qt::WindowType)
 (??0pqHelpWindow@@QEAA@PEAVQHelpEngine@@PEAVQWidget@
 @V?$QFlags@W4WindowType@Qt@Z)
 C:\paraview\bin\Qt\Widgets\pqHelpWindow.obj pqWidgets

 Cheers,
 Bruce


 On Thu, Feb 20, 2014 at 2:59 PM, Utkarsh Ayachit 
 utkarsh.ayac...@kitware.com wrote:

 Can you try putting #include algorithm at the top in those headers?

 On Thu, Feb 20, 2014 at 10:49 AM, Bruce Jones
 bruce.david.jo...@gmail.com wrote:
  I'm attempting to compile paraview in windows using visual studio 2013.
 
  So far I've managed to succesfully compile QT, and Zlib, and have
 configured
  the paraview source with CMake. I now have a Visual Studio solution
 file,
  upon opening the solution and attempting to build I get a bunch of
 errors.
  The root of the problem appears with min and max in various projects
 within
  the solution, I get a lot of these errors.
 
  Error 22 error C3861: 'min': identifier not found
 
 C:\paraview\ThirdParty\protobuf\vtkprotobuf\src\google\protobuf\wire_format_lite_inl.h
  270 1 protobuf
  Error 23 error C3861: 'max': identifier not found
 
 C:\paraview\ThirdParty\protobuf\vtkprotobuf\src\google\protobuf\repeated_field.cc
  46 1 protobuf
 
  Any suggestions?
 
  Cheers,
  Bruce
 
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Re: [Paraview] Build errors compiling Paraview with VS2013

2014-02-24 Thread Utkarsh Ayachit
Ah! Good to know. I forgot about it. Thanks for the update.

Utkarsh

On Mon, Feb 24, 2014 at 3:44 PM, Bruce Jones
bruce.david.jo...@gmail.com wrote:
 Hi,

 I just found the solution, my build of QT was not build with webkit support.
 checking PQWIDGETS_DISABLE_QTWEBKIT in cmake solved the problem.

 Cheers,
 Bruce


 On Fri, Feb 21, 2014 at 1:37 PM, Bruce Jones bruce.david.jo...@gmail.com
 wrote:

 Hey,

 Adding #include algorithm solved those errors. The only project that
 wont build now is pqWidgets, its giving me 54 errors like this one,

 Error 23 error LNK2019: unresolved external symbol __declspec(dllimport)
 public: class QNetworkAccessManager * __cdecl
 QWebPage::networkAccessManager(void)const 
 (__imp_?networkAccessManager@QWebPage@@QEBAPEAVQNetworkAccessManager@@XZ)
 referenced in function public: __cdecl pqHelpWindow::pqHelpWindow(class
 QHelpEngine *,class QWidget *,class QFlagsenum Qt::WindowType)
 (??0pqHelpWindow@@QEAA@PEAVQHelpEngine@@PEAVQWidget@@V?$QFlags@W4WindowType@Qt@Z)
 C:\paraview\bin\Qt\Widgets\pqHelpWindow.obj pqWidgets

 Cheers,
 Bruce


 On Thu, Feb 20, 2014 at 2:59 PM, Utkarsh Ayachit
 utkarsh.ayac...@kitware.com wrote:

 Can you try putting #include algorithm at the top in those headers?

 On Thu, Feb 20, 2014 at 10:49 AM, Bruce Jones
 bruce.david.jo...@gmail.com wrote:
  I'm attempting to compile paraview in windows using visual studio 2013.
 
  So far I've managed to succesfully compile QT, and Zlib, and have
  configured
  the paraview source with CMake. I now have a Visual Studio solution
  file,
  upon opening the solution and attempting to build I get a bunch of
  errors.
  The root of the problem appears with min and max in various projects
  within
  the solution, I get a lot of these errors.
 
  Error 22 error C3861: 'min': identifier not found
 
  C:\paraview\ThirdParty\protobuf\vtkprotobuf\src\google\protobuf\wire_format_lite_inl.h
  270 1 protobuf
  Error 23 error C3861: 'max': identifier not found
 
  C:\paraview\ThirdParty\protobuf\vtkprotobuf\src\google\protobuf\repeated_field.cc
  46 1 protobuf
 
  Any suggestions?
 
  Cheers,
  Bruce
 
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[Paraview] trouble with paraview.simple.AssignLookupTable

2014-02-24 Thread Scott, W Alan
I have a user that is trying to assign a custom color map in Python.  How is 
this done?  I tried the trace recorder, but it doesn't show this 
action/command.  Mu user's note is below:

Thanks,

Alan



Hello,

I am trying to use paraview.simple python interface to assign a custom color 
map, but I can't seem to get it to work with even the default color maps.  For 
example

 AssignLookupTable(nodal_eqps, Warm)
Traceback (most recent call last):
  File stdin, line 1, in module
  File /Applications/paraview.app/Contents/Python/paraview/simple.py, line 
770, in AssignLookupTable
return _GetLUTReaderInstance().GetLUT(arrayObject, LUTName, rangeOveride)
  File /Applications/paraview.app/Contents/Python/paraview/lookuptable.py, 
line 234, in GetLUT
range = self.__GetRange(aArray,aRangeOveride)
  File /Applications/paraview.app/Contents/Python/paraview/lookuptable.py, 
line 301, in __GetRange
nComps = aArray.GetNumberOfComponents()
AttributeError: 'str' object has no attribute 'GetNumberOfComponents'

I have been looking at

http://www.paraview.org/ParaView3/Doc/Nightly/www/py-doc/_modules/paraview/simple.html#AssignLookupTable

and it appears I need to pass AssignLookupTable an arrayObject.  The 
arrayname called nodal_eqps works fine with GetLookupTableForArray, but I 
don't know how to create an arrayObject from this arrayname.

Thanks for any help you can lend.


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Re: [Paraview] Setting sample distance for GPU volume rendering?

2014-02-24 Thread Vanmoer, Mark W
Hi Utkarsh, 

Changing DataRep.ScalarOpacityUnitDistance shows up as what's in the Scale 
input box. Going the other direction, setting the Scale in the GUI is what 
python prints for DataRep.ScalarOpacityUnitDistance so they do seem to be the 
same thing?

Mark


-Original Message-
From: Utkarsh Ayachit [mailto:utkarsh.ayac...@kitware.com] 
Sent: Friday, February 21, 2014 8:55 AM
To: Vanmoer, Mark W
Cc: paraview
Subject: Re: [Paraview] Setting sample distance for GPU volume rendering?

Mark,

Scale on the ColorScaleEditor is control the scale used to map data scalars to 
colors or opacity, while sampling distance controls the length at which the 
samples are accumulated when volume rendering. The two are indeed different.

Utkarsh

On Thu, Feb 20, 2014 at 3:38 PM, Vanmoer, Mark W mvanm...@illinois.edu wrote:
 Thanks Utkarsh, so it's the same thing as the Scale input in the Color Scale 
 Editor?

 I was getting color bands across the volumized(?) sections of the image and I 
 was thinking that changing the ray sample distance would help that. But I 
 just figured out that if I scale up the data the bands go away. The data was 
 300^3 cells jammed into bounds of -1.8 to 1.8.

 Mark
 -Original Message-
 From: Utkarsh Ayachit [mailto:utkarsh.ayac...@kitware.com]
 Sent: Thursday, February 20, 2014 11:52 AM
 To: Vanmoer, Mark W
 Cc: paraview
 Subject: Re: [Paraview] Setting sample distance for GPU volume rendering?

 Mark,

 You can indeed change it from Python for now. Or the same data representation 
 object, you have ScalarOpacityUnitDistance property that could be set e.g.

 r = Show()
 r.ScalarOpacityUnitDistance = 1.0

 On Thu, Feb 20, 2014 at 11:50 AM, Vanmoer, Mark W mvanm...@illinois.edu 
 wrote:
 Hello,

 In ParaView 3.8.1 it was possible to set the Sample Distance for the 
 GPU volume mapper in the client GUI. I don't see this in the 4.0.1 
 client. Is this possible to get at through Python? All I've been able 
 to find so far is the data representation's volume type string. I 
 haven't been able to figure out how to get to the mapper itself.



 Thanks,

 Mark


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Re: [Paraview] trouble with paraview.simple.AssignLookupTable

2014-02-24 Thread Burlen Loring

Hi Alan,

You get the array object from the source/reader/filter's point data. for 
example


   w = Wavelet()
   wa = w.PointData.GetArray('RTData')

See if this example doesn't help: 
http://paraview.org/Wiki/ParaView/Python/Lookup_tables


Burlen

On 2/24/2014 1:29 PM, Scott, W Alan wrote:

I have a user that is trying to assign a custom color map in Python.  How is 
this done?  I tried the trace recorder, but it doesn't show this 
action/command.  Mu user's note is below:

Thanks,

Alan



Hello,

I am trying to use paraview.simple python interface to assign a custom color 
map, but I can't seem to get it to work with even the default color maps.  For 
example


AssignLookupTable(nodal_eqps, Warm)

Traceback (most recent call last):
   File stdin, line 1, in module
   File /Applications/paraview.app/Contents/Python/paraview/simple.py, line 
770, in AssignLookupTable
 return _GetLUTReaderInstance().GetLUT(arrayObject, LUTName, rangeOveride)
   File /Applications/paraview.app/Contents/Python/paraview/lookuptable.py, 
line 234, in GetLUT
 range = self.__GetRange(aArray,aRangeOveride)
   File /Applications/paraview.app/Contents/Python/paraview/lookuptable.py, 
line 301, in __GetRange
 nComps = aArray.GetNumberOfComponents()
AttributeError: 'str' object has no attribute 'GetNumberOfComponents'

I have been looking at

http://www.paraview.org/ParaView3/Doc/Nightly/www/py-doc/_modules/paraview/simple.html#AssignLookupTable

and it appears I need to pass AssignLookupTable an arrayObject.  The arrayname called nodal_eqps 
works fine with GetLookupTableForArray, but I don't know how to create an arrayObject from this arrayname.

Thanks for any help you can lend.


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[Paraview] Trouble Mapping Data

2014-02-24 Thread kenichiro yoshimi
Dear all,

In Color Map Editor panel, Mapping Data window fails to display the
mapping when I am trying to load data including scalars larger than 1.0e+11
with  ParaView 4.1.0.  However, with ParaView 3.98 and earlier,  there is
no problem.
Any help is greatly appreciated.

Kind Regards,
yoshimi
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