[Bioc-devel] S4 accessor conflict (MoleculeExperiement)

2023-10-29 Thread Nick Robertson via Bioc-devel
Dear All, The new update of SpatialExperiement includes a molecules() method, and this appears to be causing a conflict with the MoleculeExperiement molecules() accessor. When calling molecules(me, assayName = "detected")​, the following

[Rd] GLFW [Was: Wayland Display Support in R Plot]

2023-10-29 Thread Simon Urbanek
Duncan, at least according to the docs GLFW doesn't really care - it will forward whatever OpenGL is available on the platform. In fact it says: "By default it also includes the OpenGL header from your development environment. On some platforms this header only supports older versions of

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Dirk Eddelbuettel
On 30 October 2023 at 09:20, Simon Urbanek wrote: | > On 30/10/2023, at 8:38 AM, Dirk Eddelbuettel wrote: | > On 30 October 2023 at 07:54, Paul Murrell wrote: | > | I am unaware of any Wayland display support. | > | | > | One useful way forward would be an R package that provides such a device

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Duncan Murdoch
On 29/10/2023 4:20 p.m., Simon Urbanek wrote: On 30/10/2023, at 8:38 AM, Dirk Eddelbuettel wrote: On 30 October 2023 at 07:54, Paul Murrell wrote: | I am unaware of any Wayland display support. | | One useful way forward would be an R package that provides such a device | (along the lines

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Simon Urbanek
> On 30/10/2023, at 8:38 AM, Dirk Eddelbuettel wrote: > > > On 30 October 2023 at 07:54, Paul Murrell wrote: > | I am unaware of any Wayland display support. > | > | One useful way forward would be an R package that provides such a device > | (along the lines of 'Cairo', 'tikzDevice', et

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Dirk Eddelbuettel
On 30 October 2023 at 07:54, Paul Murrell wrote: | I am unaware of any Wayland display support. | | One useful way forward would be an R package that provides such a device | (along the lines of 'Cairo', 'tikzDevice', et al) As I understand it, it is a protocol, and not a device. Several

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Paul Murrell
Hi I am unaware of any Wayland display support. One useful way forward would be an R package that provides such a device (along the lines of 'Cairo', 'tikzDevice', et al) Paul On 27/10/23 23:16, quentin.thorne via R-devel wrote: Hello, I'm interested in understanding the current state of

[Rd] dim<-() changed in R-devel; no longer removing "dimnames" when doing dim(x) <- dim(x)

2023-10-29 Thread Henrik Bengtsson
Hello, the fix of PR18612 (https://bugs.r-project.org/show_bug.cgi?id=18612) in r85380 (https://github.com/wch/r-source/commit/2653cc6203fce4c48874111c75bbccac3ac4e803) caused a change in `dim<-()`. Specifically, in the past, any `dim<-()` assignment would _always_ remove "dimnames" and "names"