Re: [R-pkg-devel] Matrix and Mac OS

2023-10-31 Thread Uwe Ligges
On 01.11.2023 03:51, Mikael Jagan wrote: Thanks.  It seems that we were mistaken in our feeling (IIRC) that it would be "OK" to implicitly require '--no-manual' on versions of R from 3.5.0 to 4.2.1, not changing our Depends. We will fix this in Matrix 1.6-2, probably by conditionalizing or

Re: [R-pkg-devel] Matrix and Mac OS

2023-10-31 Thread Mikael Jagan
Thanks. It seems that we were mistaken in our feeling (IIRC) that it would be "OK" to implicitly require '--no-manual' on versions of R from 3.5.0 to 4.2.1, not changing our Depends. We will fix this in Matrix 1.6-2, probably by conditionalizing or otherwise replacing the amsmath commands and

Re: [R-pkg-devel] Fortune candidate Re: Issue with R Package on CRAN - OpenMP and clang17

2023-10-31 Thread Greg Hunt
If i remember rightly one of the early Algol compilers for the IBM mainframe couldnt be compiled on an IBM mainframe because it was too memory hungry (it had to be cross compiled). The numbers change, but the problems don’t, except that i haven’t run a compile lately that ran out of memory like

Re: [R-pkg-devel] Fortune candidate Re: Issue with R Package on CRAN - OpenMP and clang17

2023-10-31 Thread Jeff Newmiller via R-package-devel
ROFL! Seconded! The quote itself has a bit of greybeard smell to it, but the "ran out of stuff to delete at 100GB with 1000 out of 6000 targets compiled" had me in stitches. On October 31, 2023 10:16:10 AM PDT, Dirk Eddelbuettel wrote: > >On 31 October 2023 at 19:58, Ivan Krylov wrote: >|

Re: [R-pkg-devel] Matrix and Mac OS

2023-10-31 Thread Simon Urbanek
Mikael, in that case I think your requirements are wrong - Matrix says R >= 3.5.0 which is apparently incorrect - from what you say it should be 4.2.2?. I can certainly update to 4.2.3 if necessary. Cheers, Simon > On 1/11/2023, at 9:19 AM, Mikael Jagan wrote: > > Thanks. We did see

Re: [R-pkg-devel] Matrix and Mac OS

2023-10-31 Thread Mikael Jagan
Thanks. We did see those ERRORs, stemming from use (since Matrix 1.6-0) of amsmath commands in Rd files. These have been supported since R 4.2.2, but r-oldrel-macos-* (unlike r-oldrel-windows-*) continues to run R 4.2.0. My expectation was that those machines would begin running R >= 4.2.2 well

Re: [R-pkg-devel] Matrix and Mac OS

2023-10-31 Thread Simon Urbanek
Mikael, current Matrix fails checks on R-oldrel so that's why only the last working version is installed: https://cran.r-project.org/web/checks/check_results_Matrix.html Cheers, Simon > On 1/11/2023, at 4:05 AM, Mikael Jagan wrote: > > I am guessing that they mean EdSurvey: > >

[R-pkg-devel] Fortune candidate Re: Issue with R Package on CRAN - OpenMP and clang17

2023-10-31 Thread Dirk Eddelbuettel
On 31 October 2023 at 19:58, Ivan Krylov wrote: | [...] The computers that helped launch the first | people into space had 2 kWords of memory, but nowadays you need more | than 256 MBytes of RAM to launch a bird into a pig and 10 GBytes of | storage in order to compile a compiler. This is what

Re: [R-pkg-devel] Issue with R Package on CRAN - OpenMP and clang17

2023-10-31 Thread Ivan Krylov
В Mon, 30 Oct 2023 18:52:29 +0300 Ivan Krylov пишет: > I'll try to reproduce your problem, starting by downloading and > compiling flang from https://github.com/llvm/llvm-project.git commit > 092b6c5ee3707ea10b9f10d0a674e8d12395369b (as stated at >

Re: [R-pkg-devel] DLL requires the use of native symbols

2023-10-31 Thread Aixiang Jiang
Thank you so much - Ivan! I think that I need to update R to the latest version then. Have a great day! Best, Aixiang From: Ivan Krylov Sent: Tuesday, October 31, 2023 1:36 AM To: Aixiang Jiang Cc: List r-package-devel; Simon Urbanek Subject: Re:

Re: [R-pkg-devel] Matrix and Mac OS

2023-10-31 Thread Mikael Jagan
Re-sending to the list with correct subject line ... I should undigest myself ... Mikael On 2023-10-31 11:05 am, Mikael Jagan wrote: I am guessing that they mean EdSurvey: https://cran.r-project.org/web/checks/check_results_EdSurvey.html Probably Matrix 1.6-1.1 is not installed on

Re: [R-pkg-devel] R-package-devel Digest, Vol 102, Issue 27

2023-10-31 Thread Mikael Jagan
I am guessing that they mean EdSurvey: https://cran.r-project.org/web/checks/check_results_EdSurvey.html Probably Matrix 1.6-1.1 is not installed on r-oldrel-macos-arm64, even though it can be, because it was not released until R 4.3-z. AFAIK, methods for 'qr' have not been touched since

Re: [R-pkg-devel] Failing to write config file in linux

2023-10-31 Thread Keshav, Krishna
Hello, Thanks for suggesting tools::R_user_dir(). I was able to implement and resubmit. This issue prompted me to read the policies thoroughly here - https://r-pkgs.org/release.html . Best Regards, Krishna Keshav From: Simon Urbanek Date: Monday, October 23, 2023 at 3:07 PM To: Keshav,

Re: [R-pkg-devel] DLL requires the use of native symbols

2023-10-31 Thread Ivan Krylov
Dear Simon, Could you please look into this? The machines running r-release-macos-* checks seem to have MassSpecWavelet < 1.66 installed instead of the current version, 1.68. I think that MassSpecWavelet >= 1.66 would be version-appropriate for R-4.3 (Bioconductor >= 3.17). On Tue, 31 Oct 2023

[R-pkg-devel] DLL requires the use of native symbols

2023-10-31 Thread Aixiang Jiang
Hello everyone, I recently submitted my NMRphasing R package. While most of the check results are fine, I encountered two issues on macOS. The major error is: 'DLL requires the use of native symbols' I'm wondering how I can resolve this issue. Any help or suggestions would be greatly