[R-sig-phylo] taxonomic tables and trees

2011-12-13 Thread David Buckley
Hi all, I remember seeing an R script/application to transform a taxon table (say an excell table containing taxonomic information for a group organized as orders, families, genera, etc. in columns) onto a 'phylogenetic/taxonomic' tree (groups defined by the nested taxonomic ranks), but I can't

Re: [R-sig-phylo] taxonomic tables and trees

2011-12-13 Thread Emmanuel Paradis
Hi David, It's in ape: ?as.phylo.formula Cheers, Emmanuel -Original Message- From: David Buckley dbuck...@mncn.csic.es Sender: r-sig-phylo-boun...@r-project.org Date: Tue, 13 Dec 2011 12:56:18 To: r-sig-phylo@r-project.org Subject: [R-sig-phylo] taxonomic tables and trees Hi all, I

Re: [R-sig-phylo] taxonomic tables and trees

2011-12-13 Thread Marcus Cianciaruso
Hi David, I think you can have a look at taxa2dist() in the package vegan. Best, Marcus On Tue, Dec 13, 2011 at 9:56 AM, David Buckley dbuck...@mncn.csic.eswrote: Hi all, I remember seeing an R script/application to transform a taxon table (say an excell table containing taxonomic