[R-sig-phylo] Plotting bootstrap values from one tree onto the majority rule consensus tree

Hi all, Me again. I was wondering if anyone had a way to plot the bootstrap values from one tree onto another tree. I have a majority rule consensus tree and a bootstrap tree, both generated by PAUP, but not identical (but very close to identical). I would like to plot the bootstrap values

Re: [R-sig-phylo] Plotting bootstrap values from one tree onto the majority rule consensus tree

Hi Alastair, On Feb 24, 2011, at 12:40 PM, Alastair Potts wrote: Hi all, Me again. I was wondering if anyone had a way to plot the bootstrap values from one tree onto another tree. I have a majority rule consensus tree and a bootstrap tree, both generated by PAUP, but not identical (but

Re: [R-sig-phylo] Plotting bootstrap values from one tree onto the majority rule consensus tree

Hi Alastair, It's not an R-based solution, but I've written a small python program to handle this very task. It takes advantage (and requires the previous installation) of the DendroPy library written by Jeet Sukumaran and Mark Holder. It should be able to handle polytomies without a problem