[GitHub] spark pull request #23050: [SPARK-26079][sql] Ensure listener event delivery...

2018-11-16 Thread asfgit
Github user asfgit closed the pull request at:

https://github.com/apache/spark/pull/23050


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[GitHub] spark issue #23063: [SPARK-26033][PYTHON][TESTS] Break large ml/tests.py fil...

2018-11-16 Thread HyukjinKwon
Github user HyukjinKwon commented on the issue:

https://github.com/apache/spark/pull/23063
  
Will merge this one tomorrow if this is not merged till then.


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[GitHub] spark issue #23050: [SPARK-26079][sql] Ensure listener event delivery in Str...

2018-11-16 Thread HyukjinKwon
Github user HyukjinKwon commented on the issue:

https://github.com/apache/spark/pull/23050
  
Merged to master and branch-2.4.


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[GitHub] spark pull request #23048: transform DenseVector x DenseVector sqdist from i...

2018-11-16 Thread HyukjinKwon
Github user HyukjinKwon commented on a diff in the pull request:

https://github.com/apache/spark/pull/23048#discussion_r234399421
  
--- Diff: 
mllib-local/src/main/scala/org/apache/spark/ml/linalg/Vectors.scala ---
@@ -370,14 +370,19 @@ object Vectors {
   case (v1: DenseVector, v2: SparseVector) =>
 squaredDistance = sqdist(v2, v1)
 
-  case (DenseVector(vv1), DenseVector(vv2)) =>
-var kv = 0
+  case (DenseVector(vv1), DenseVector(vv2)) => {
 val sz = vv1.length
-while (kv < sz) {
-  val score = vv1(kv) - vv2(kv)
-  squaredDistance += score * score
-  kv += 1
+@annotation.tailrec
--- End diff --

FWIW, I did an experimental by myself before because someone proposed 
similar change (turning `while` to tail recursive one). There was no virtual 
difference. If this change is only tail recursion vs `while`, I doubt how much 
it can improve. I believe the benchmark steps should be clarified.


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[GitHub] spark issue #23049: [SPARK-26076][Build][Minor] Revise ambiguous error messa...

2018-11-16 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/23049
  
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[GitHub] spark issue #23049: [SPARK-26076][Build][Minor] Revise ambiguous error messa...

2018-11-16 Thread AmplabJenkins
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[GitHub] spark issue #23049: [SPARK-26076][Build][Minor] Revise ambiguous error messa...

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[GitHub] spark pull request #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics tabl...

2018-11-16 Thread shahidki31
Github user shahidki31 commented on a diff in the pull request:

https://github.com/apache/spark/pull/23038#discussion_r234399022
  
--- Diff: 
core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala ---
@@ -1275,6 +1275,49 @@ class AppStatusListenerSuite extends SparkFunSuite 
with BeforeAndAfter {
 assert(allJobs.head.numFailedStages == 1)
   }
 
+  test("SPARK-25451: total tasks in the executor summary should match 
total stage tasks") {
+val testConf = conf.clone()
+  .set("spark.ui.liveUpdate.period", s"${Int.MaxValue}s")
+
+val listener = new AppStatusListener(store, testConf, true)
+
+val stage = new StageInfo(1, 0, "stage", 4, Nil, Nil, "details")
+listener.onJobStart(SparkListenerJobStart(1, time, Seq(stage), null))
+listener.onStageSubmitted(SparkListenerStageSubmitted(stage, new 
Properties()))
+
+val tasks = createTasks(4, Array("1", "2"))
+tasks.foreach { task =>
+  listener.onTaskStart(SparkListenerTaskStart(stage.stageId, 
stage.attemptNumber, task))
+}
+
+tasks.filter(_.index < 2).foreach { task =>
+time += 1
+var execId = (task.index % 2 + 1).toString
+tasks(task.index).markFinished(TaskState.FAILED, time)
+listener.onTaskEnd(
+  SparkListenerTaskEnd(stage.stageId, stage.attemptId, "taskType",
+ExecutorLostFailure(execId, true, Some("Lost executor")), 
tasks(task.index), null))
+}
+
+stage.failureReason = Some("Failed")
+listener.onStageCompleted(SparkListenerStageCompleted(stage))
+time += 1
+listener.onJobEnd(SparkListenerJobEnd(1, time, JobFailed(new 
RuntimeException("Bad Executor"
+
+tasks.filter(_.index >= 2).foreach { task =>
+time += 1
+var execId = (task.index % 2 + 1).toString
+tasks(task.index).markFinished(TaskState.FAILED, time)
+listener.onTaskEnd(SparkListenerTaskEnd(stage.stageId, 
stage.attemptId, "taskType",
+  ExecutorLostFailure(execId, true, Some("Lost executor")), 
tasks(task.index), null))
+}
+
+val esummary = 
store.view(classOf[ExecutorStageSummaryWrapper]).asScala.map(_.info)
+esummary.foreach {
+  execSummary => assert(execSummary.failedTasks == 2)
--- End diff --

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[GitHub] spark pull request #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics tabl...

2018-11-16 Thread shahidki31
Github user shahidki31 commented on a diff in the pull request:

https://github.com/apache/spark/pull/23038#discussion_r234399018
  
--- Diff: 
core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala ---
@@ -1275,6 +1275,49 @@ class AppStatusListenerSuite extends SparkFunSuite 
with BeforeAndAfter {
 assert(allJobs.head.numFailedStages == 1)
   }
 
+  test("SPARK-25451: total tasks in the executor summary should match 
total stage tasks") {
+val testConf = conf.clone()
+  .set("spark.ui.liveUpdate.period", s"${Int.MaxValue}s")
+
+val listener = new AppStatusListener(store, testConf, true)
+
+val stage = new StageInfo(1, 0, "stage", 4, Nil, Nil, "details")
+listener.onJobStart(SparkListenerJobStart(1, time, Seq(stage), null))
+listener.onStageSubmitted(SparkListenerStageSubmitted(stage, new 
Properties()))
+
+val tasks = createTasks(4, Array("1", "2"))
+tasks.foreach { task =>
+  listener.onTaskStart(SparkListenerTaskStart(stage.stageId, 
stage.attemptNumber, task))
+}
+
+tasks.filter(_.index < 2).foreach { task =>
+time += 1
+var execId = (task.index % 2 + 1).toString
+tasks(task.index).markFinished(TaskState.FAILED, time)
+listener.onTaskEnd(
+  SparkListenerTaskEnd(stage.stageId, stage.attemptId, "taskType",
+ExecutorLostFailure(execId, true, Some("Lost executor")), 
tasks(task.index), null))
+}
+
+stage.failureReason = Some("Failed")
+listener.onStageCompleted(SparkListenerStageCompleted(stage))
+time += 1
+listener.onJobEnd(SparkListenerJobEnd(1, time, JobFailed(new 
RuntimeException("Bad Executor"
+
+tasks.filter(_.index >= 2).foreach { task =>
+time += 1
--- End diff --

Updated


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[GitHub] spark pull request #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics tabl...

2018-11-16 Thread shahidki31
Github user shahidki31 commented on a diff in the pull request:

https://github.com/apache/spark/pull/23038#discussion_r234399010
  
--- Diff: 
core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala ---
@@ -1275,6 +1275,49 @@ class AppStatusListenerSuite extends SparkFunSuite 
with BeforeAndAfter {
 assert(allJobs.head.numFailedStages == 1)
   }
 
+  test("SPARK-25451: total tasks in the executor summary should match 
total stage tasks") {
+val testConf = conf.clone()
+  .set("spark.ui.liveUpdate.period", s"${Int.MaxValue}s")
+
+val listener = new AppStatusListener(store, testConf, true)
+
+val stage = new StageInfo(1, 0, "stage", 4, Nil, Nil, "details")
+listener.onJobStart(SparkListenerJobStart(1, time, Seq(stage), null))
+listener.onStageSubmitted(SparkListenerStageSubmitted(stage, new 
Properties()))
+
+val tasks = createTasks(4, Array("1", "2"))
+tasks.foreach { task =>
+  listener.onTaskStart(SparkListenerTaskStart(stage.stageId, 
stage.attemptNumber, task))
+}
+
+tasks.filter(_.index < 2).foreach { task =>
+time += 1
--- End diff --

Updated the code


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[GitHub] spark issue #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics table doesn...

2018-11-16 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/23038
  
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[GitHub] spark pull request #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics tabl...

2018-11-16 Thread shahidki31
Github user shahidki31 commented on a diff in the pull request:

https://github.com/apache/spark/pull/23038#discussion_r234399006
  
--- Diff: 
core/src/test/scala/org/apache/spark/status/AppStatusListenerSuite.scala ---
@@ -1275,6 +1275,49 @@ class AppStatusListenerSuite extends SparkFunSuite 
with BeforeAndAfter {
 assert(allJobs.head.numFailedStages == 1)
   }
 
+  test("SPARK-25451: total tasks in the executor summary should match 
total stage tasks") {
+val testConf = conf.clone()
+  .set("spark.ui.liveUpdate.period", s"${Int.MaxValue}s")
--- End diff --

Done.


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[GitHub] spark issue #23055: [SPARK-26080][PYTHON] Disable 'spark.executor.pyspark.me...

2018-11-16 Thread AmplabJenkins
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https://github.com/apache/spark/pull/23055
  
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[GitHub] spark issue #23055: [SPARK-26080][PYTHON] Disable 'spark.executor.pyspark.me...

2018-11-16 Thread AmplabJenkins
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[GitHub] spark issue #23055: [SPARK-26080][PYTHON] Disable 'spark.executor.pyspark.me...

2018-11-16 Thread SparkQA
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[GitHub] spark issue #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous ...

2018-11-16 Thread AmplabJenkins
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https://github.com/apache/spark/pull/23065
  
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[GitHub] spark issue #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous ...

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[GitHub] spark issue #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous ...

2018-11-16 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/23065
  
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[`e2e375b`](https://github.com/apache/spark/commit/e2e375b592ccbbf2e468736fb2ee00b33787c58e).
 * This patch **fails Spark unit tests**.
 * This patch merges cleanly.
 * This patch adds no public classes.


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[GitHub] spark pull request #23055: [SPARK-26080][PYTHON] Disable 'spark.executor.pys...

2018-11-16 Thread HyukjinKwon
Github user HyukjinKwon commented on a diff in the pull request:

https://github.com/apache/spark/pull/23055#discussion_r234398745
  
--- Diff: 
core/src/main/scala/org/apache/spark/api/python/PythonRunner.scala ---
@@ -74,8 +74,13 @@ private[spark] abstract class BasePythonRunner[IN, OUT](
   private val reuseWorker = conf.getBoolean("spark.python.worker.reuse", 
true)
   // each python worker gets an equal part of the allocation. the worker 
pool will grow to the
   // number of concurrent tasks, which is determined by the number of 
cores in this executor.
-  private val memoryMb = conf.get(PYSPARK_EXECUTOR_MEMORY)
+  private val memoryMb = if (Utils.isWindows) {
--- End diff --

> My point is that if resource can't be loaded for any reason, the code 
shouldn't fail. As it is, if resource can't be loaded then that is handled, but 
if the memory limit is set then the worker will still try to use it. That's 
what I think is brittle. There should be a flag for whether to attempt to use 
the resource API, based on whether it was loaded.

Ah, so the point is that the condition for the existence `resource` might 
not be clear - so we should have the flag to make it not failed in case. Yup, 
makes sense. Let me add a flag.

> If the worker operates as I described, then why make any changes on the 
JVM side?

I am making some changes on the JVM side so that we can explicitly disable 
on a certain condition For instance, if we don't make a change in JVM side, and 
only make the changes in Python `worker`. Later, we can have some other changes 
in JVM side referring this configuration - which can be problematic.

If we keep the configuration somehow in JVM side, it basically means we 
could have another status for this configuration, rather then just being 
disabled or enabled which we should take care of.



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[GitHub] spark issue #23059: [SPARK-26091][SQL] Upgrade to 2.3.4 for Hive Metastore C...

2018-11-16 Thread HyukjinKwon
Github user HyukjinKwon commented on the issue:

https://github.com/apache/spark/pull/23059
  
Looks good. Adding @gatorsmile and @wangyum 


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[GitHub] spark issue #23063: [SPARK-26033][PYTHON][TESTS] Break large ml/tests.py fil...

2018-11-16 Thread HyukjinKwon
Github user HyukjinKwon commented on the issue:

https://github.com/apache/spark/pull/23063
  
Let me leave a cc for @holdenk, @MLnick, @jkbradley and @mengxr FYI.


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[GitHub] spark issue #23063: [SPARK-26033][PYTHON][TESTS] Break large ml/tests.py fil...

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 * This patch passes all tests.
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[GitHub] spark issue #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr' in the...

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[GitHub] spark issue #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr' in the...

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[GitHub] spark issue #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr' in the...

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[GitHub] spark issue #23049: [SPARK-26076][Build][Minor] Revise ambiguous error messa...

2018-11-16 Thread gengliangwang
Github user gengliangwang commented on the issue:

https://github.com/apache/spark/pull/23049
  
@vanzin I see your point. I will add a link to 
https://spark.apache.org/docs/latest/configuration.html. Thanks for the 
suggestion.
In my case, I didn't know where to find or edit `spark-env.sh` at that 
time. I tried run `find . -name spark-env.sh` and got nothing.
The script will only print `spark-env.sh` without its location only if 
SPARK_ENV_LOADED is not set.


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[GitHub] spark issue #23064: [MINOR][SQL] Fix typo in CTAS plan database string

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[GitHub] spark issue #23064: [MINOR][SQL] Fix typo in CTAS plan database string

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[GitHub] spark issue #23064: [MINOR][SQL] Fix typo in CTAS plan database string

2018-11-16 Thread SparkQA
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[GitHub] spark issue #23067: [SPARK-26097][Web UI] Add the new partitioning descripti...

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[GitHub] spark pull request #23067: [SPARK-26097][Web UI] Add the new partitioning de...

2018-11-16 Thread idanz
GitHub user idanz opened a pull request:

https://github.com/apache/spark/pull/23067

[SPARK-26097][Web UI] Add the new partitioning description to the exchange 
node name

## What changes were proposed in this pull request?

small change in the node name of the Exchange node to add in the string 
representation of the partitioning, this is just to have this information 
propagate to the DAG UI and help with join skew investigation for example.

## How was this patch tested?

tested manually to see the UI impact and regression to see nothing is broken
![image 
8](https://user-images.githubusercontent.com/320230/48657327-ee90e280-ea61-11e8-95ec-04bf51d0665e.png)


Please review http://spark.apache.org/contributing.html before opening a 
pull request.


You can merge this pull request into a Git repository by running:

$ git pull https://github.com/idanz/spark patch-3

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/spark/pull/23067.patch

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with (at least) the following in the commit message:

This closes #23067


commit 74898fda77f255a13981907aa5b9b6b78406aa1d
Author: Idan Zalzberg 
Date:   2018-11-17T05:05:03Z

Add the new partitioning description to the exchange node name




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[GitHub] spark issue #23053: [SPARK-25957][K8S] Add ability to skip building optional...

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[GitHub] spark issue #23053: [SPARK-25957][K8S] Add ability to skip building optional...

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[GitHub] spark issue #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr' in the...

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[GitHub] spark issue #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr' in the...

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[GitHub] spark issue #23066: [SPARK-26043][CORE] Make SparkHadoopUtil private to Spar...

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[GitHub] spark issue #23066: [SPARK-26043][CORE] Make SparkHadoopUtil private to Spar...

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[GitHub] spark pull request #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr'...

2018-11-16 Thread shahidki31
Github user shahidki31 commented on a diff in the pull request:

https://github.com/apache/spark/pull/23016#discussion_r234396276
  
--- Diff: mllib/src/main/scala/org/apache/spark/mllib/fpm/PrefixSpan.scala 
---
@@ -174,6 +174,10 @@ class PrefixSpan private (
 val freqSequences = results.map { case (seq: Array[Int], count: Long) 
=>
   new FreqSequence(toPublicRepr(seq), count)
 }
+// Cache the final RDD to the same storage level as input
+freqSequences.persist(data.getStorageLevel)
--- End diff --

@srowen  Yes. That is the correct approach. I updated the code. Thanks


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[GitHub] spark issue #23066: [SPARK-26043][CORE] Make SparkHadoopUtil private to Spar...

2018-11-16 Thread SparkQA
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[GitHub] spark issue #23066: [SPARK-26043][CORE] Make SparkHadoopUtil private to Spar...

2018-11-16 Thread srowen
Github user srowen commented on the issue:

https://github.com/apache/spark/pull/23066
  
CC @vanzin . I took the liberty of simplifying a few other bits of the file 
too.


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[GitHub] spark pull request #23066: [SPARK-26043][CORE] Make SparkHadoopUtil private ...

2018-11-16 Thread srowen
GitHub user srowen opened a pull request:

https://github.com/apache/spark/pull/23066

[SPARK-26043][CORE] Make SparkHadoopUtil private to Spark

## What changes were proposed in this pull request?

Make SparkHadoopUtil private to Spark

## How was this patch tested?

Existing tests.

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/srowen/spark SPARK-26043

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/spark/pull/23066.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #23066


commit 5a79b2e73a658b5fffd6b605b109b63cd1c887e2
Author: Sean Owen 
Date:   2018-11-17T04:22:52Z

Make SparkHadoopUtil private




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[GitHub] spark pull request #22995: [SPARK-25998] [CORE] Change TorrentBroadcast to h...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/22995#discussion_r234396107
  
--- Diff: 
core/src/main/scala/org/apache/spark/broadcast/TorrentBroadcast.scala ---
@@ -93,7 +96,14 @@ private[spark] class TorrentBroadcast[T: ClassTag](obj: 
T, id: Long)
   private var checksums: Array[Int] = _
 
   override protected def getValue() = {
-_value
+val memoized: T = if (_value == null) null.asInstanceOf[T] else 
_value.get
--- End diff --

I suppose there is a race condition here, in that several threads could end 
up simultaneously setting the reference. It won't be incorrect as the data 
ought to be the same. I am not sure of the access pattern for this object; 
maybe it's always single-threaded. But if lots are reading, you can imagine 
them all causing a call to `readBroadcastBlock()` simultaneously.

Introducing another object to lock on is safe and not too much extra 
legwork. Might be worth it.

Isn't WeakReference cleared on any GC? would SoftReference be better to 
hold out until memory is exhausted? to avoid re-reading. There's a tradeoff 
there.

Good idea, just surprisingly full of possible gotchas.

Nit: isn't `val memoized = if (_value == null) null else _value.get` 
sufficient?


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[GitHub] spark issue #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics table doesn...

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[GitHub] spark issue #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics table doesn...

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[GitHub] spark issue #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics table doesn...

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[GitHub] spark pull request #23016: [SPARK-26006][mllib] unpersist 'dataInternalRepr'...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23016#discussion_r234395721
  
--- Diff: mllib/src/main/scala/org/apache/spark/mllib/fpm/PrefixSpan.scala 
---
@@ -174,6 +174,10 @@ class PrefixSpan private (
 val freqSequences = results.map { case (seq: Array[Int], count: Long) 
=>
   new FreqSequence(toPublicRepr(seq), count)
 }
+// Cache the final RDD to the same storage level as input
+freqSequences.persist(data.getStorageLevel)
--- End diff --

The problem here is that it won't get persisted until something 
materializes it, and at that point its dependent RDD dataInternalRepr is 
already unpersisted.

I'd say that _if_ the input's storage level isn't NONE, then persist 
freqSequences at the same level and .count() it to materialize it. Then 
unpersist dataInternalRepr in all events.


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[GitHub] spark issue #23040: [SPARK-26068][Core]ChunkedByteBufferInputStream should h...

2018-11-16 Thread cloud-fan
Github user cloud-fan commented on the issue:

https://github.com/apache/spark/pull/23040
  
also cc @jiangxb1987 @zsxwing 


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[GitHub] spark issue #23040: [SPARK-26068][Core]ChunkedByteBufferInputStream should h...

2018-11-16 Thread cloud-fan
Github user cloud-fan commented on the issue:

https://github.com/apache/spark/pull/23040
  
LGTM except one comment


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[GitHub] spark pull request #23040: [SPARK-26068][Core]ChunkedByteBufferInputStream s...

2018-11-16 Thread cloud-fan
Github user cloud-fan commented on a diff in the pull request:

https://github.com/apache/spark/pull/23040#discussion_r234395227
  
--- Diff: 
core/src/main/scala/org/apache/spark/util/io/ChunkedByteBuffer.scala ---
@@ -222,7 +222,7 @@ private[spark] class ChunkedByteBufferInputStream(
 dispose: Boolean)
   extends InputStream {
 
-  private[this] var chunks = chunkedByteBuffer.getChunks().iterator
+  private[this] var chunks = 
chunkedByteBuffer.getChunks().filter(_.hasRemaining).iterator
--- End diff --

can you add a comment above, saying that we do this filter because `read` 
assumes `chunks` has no empty chunk?


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[GitHub] spark issue #23062: [SPARK-8288][SQL] ScalaReflection can use companion obje...

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[GitHub] spark issue #23017: [SPARK-26015][K8S] Set a default UID for Spark on K8S Im...

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[GitHub] spark issue #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics table doesn...

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[GitHub] spark issue #23043: [SPARK-26021][SQL] replace minus zero with zero in Unsaf...

2018-11-16 Thread cloud-fan
Github user cloud-fan commented on the issue:

https://github.com/apache/spark/pull/23043
  
`UnsafeRow.set` is not the only place to write float/double as binary data, 
can you check other places like UnsafeWriter?


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[GitHub] spark issue #23061: [SPARK-26095][build] Disable parallelization in make-dis...

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[GitHub] spark issue #23038: [SPARK-25451][CORE][WEBUI]Aggregated metrics table doesn...

2018-11-16 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/23038
  
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[`5b13b77`](https://github.com/apache/spark/commit/5b13b7725cc6dff0e6caed1229c05efcf89d9eff).
 * This patch passes all tests.
 * This patch merges cleanly.
 * This patch adds no public classes.


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[GitHub] spark issue #23030: [MINOR][YARN] Make memLimitExceededLogMessage more clean

2018-11-16 Thread SparkQA
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https://github.com/apache/spark/pull/23030
  
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 * This patch passes all tests.
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[GitHub] spark issue #23030: [MINOR][YARN] Make memLimitExceededLogMessage more clean

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[GitHub] spark issue #23030: [MINOR][YARN] Make memLimitExceededLogMessage more clean

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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393692
  
--- Diff: common/unsafe/pom.xml ---
@@ -89,6 +89,11 @@
   commons-lang3
   test
 
+
+  org.apache.commons
+  commons-text
--- End diff --

LevenshteinDistance moved here from commons lang


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393727
  
--- Diff: 
external/avro/src/test/scala/org/apache/spark/sql/avro/AvroSuite.scala ---
@@ -138,7 +138,7 @@ class AvroSuite extends QueryTest with SharedSQLContext 
with SQLTestUtils {
   test("test NULL avro type") {
 withTempPath { dir =>
   val fields =
-Seq(new Field("null", Schema.create(Type.NULL), "doc", 
null)).asJava
+Seq(new Field("null", Schema.create(Type.NULL), "doc", 
null.asInstanceOf[AnyVal])).asJava
--- End diff --

Should be an exact workalike invocation here, just works around a 
deprecation


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393870
  
--- Diff: 
sql/core/src/test/scala/org/apache/spark/sql/execution/streaming/ProcessingTimeExecutorSuite.scala
 ---
@@ -48,7 +45,7 @@ class ProcessingTimeExecutorSuite extends SparkFunSuite 
with TimeLimits {
   }
 
   test("trigger timing") {
-val triggerTimes = new ConcurrentHashSet[Int]
+val triggerTimes = ConcurrentHashMap.newKeySet[Int]()
--- End diff --

Yes, this is the recommended way to get a concurrent Set in the JDK


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393768
  
--- Diff: 
mllib/src/main/scala/org/apache/spark/ml/feature/LabeledPoint.scala ---
@@ -30,8 +28,12 @@ import org.apache.spark.ml.linalg.Vector
  * @param features List of features for this data point.
  */
 @Since("2.0.0")
-@BeanInfo
 case class LabeledPoint(@Since("2.0.0") label: Double, @Since("2.0.0") 
features: Vector) {
+
+  def getLabel: Double = label
--- End diff --

These are added to explicitly add what the companion BeanInfo class was 
implicitly adding


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393704
  
--- Diff: core/src/main/scala/org/apache/spark/scheduler/StageInfo.scala ---
@@ -30,7 +30,7 @@ import org.apache.spark.storage.RDDInfo
 @DeveloperApi
 class StageInfo(
 val stageId: Int,
-@deprecated("Use attemptNumber instead", "2.3.0") val attemptId: Int,
+private val attemptId: Int,
--- End diff --

Funny, MiMa didn't warn about this, but will go in release notes


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393743
  
--- Diff: 
external/kinesis-asl/src/main/java/org/apache/spark/examples/streaming/JavaKinesisWordCountASL.java
 ---
@@ -105,25 +105,22 @@ public static void main(String[] args) throws 
Exception {
 String endpointUrl = args[2];
 
 // Create a Kinesis client in order to determine the number of shards 
for the given stream
-AmazonKinesisClient kinesisClient =
-new AmazonKinesisClient(new DefaultAWSCredentialsProviderChain());
-kinesisClient.setEndpoint(endpointUrl);
-int numShards =
-
kinesisClient.describeStream(streamName).getStreamDescription().getShards().size();
-
+AmazonKinesis kinesisClient = AmazonKinesisClientBuilder.standard()
--- End diff --

Most of the Kinesis changes are of this form, to use the new client 
builder, with the same argument going in as far as I can tell. The rest are 
Java 8 cleanups.


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[GitHub] spark issue #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous ...

2018-11-16 Thread SparkQA
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https://github.com/apache/spark/pull/23065
  
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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393799
  
--- Diff: 
mllib/src/test/scala/org/apache/spark/ml/feature/QuantileDiscretizerSuite.scala 
---
@@ -276,10 +276,10 @@ class QuantileDiscretizerSuite extends MLTest with 
DefaultReadWriteTest {
   1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0)
 val data2 = Array.range(1, 40, 2).map(_.toDouble)
 val expected2 = Array (0.0, 0.0, 0.0, 1.0, 1.0, 1.0, 1.0, 2.0, 2.0, 
2.0,
-  2.0, 2.0, 3.0, 3.0, 3.0, 4.0, 4.0, 4.0, 4.0, 4.0)
+  2.0, 3.0, 3.0, 3.0, 3.0, 4.0, 4.0, 4.0, 4.0, 4.0)
--- End diff --

Interestingly, avoiding double Ranges actually fixed the code here. You can 
see the bucketing before didn't quite make sense. Now it's even. It's because 
of...

```
scala> (0.0 to 1.0 by 1.0 / 10).toList
:12: warning: method to in trait FractionalProxy is deprecated 
(since 2.12.6): use BigDecimal range instead
   (0.0 to 1.0 by 1.0 / 10).toList
^
res5: List[Double] = List(0.0, 0.1, 0.2, 0.30004, 0.4, 0.5, 
0.6, 0.7, 0.7999, 0.8999, 0.)

scala> (0 to 10).map(_.toDouble / 10).toList
res6: List[Double] = List(0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 
1.0)
```


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393720
  
--- Diff: 
external/kafka-0-10-sql/src/test/scala/org/apache/spark/sql/kafka010/KafkaContinuousTest.scala
 ---
@@ -56,7 +56,7 @@ trait KafkaContinuousTest extends KafkaSourceTest {
   }
 
   // Continuous processing tasks end asynchronously, so test that they 
actually end.
-  private val tasksEndedListener = new SparkListener() {
+  private class TasksEndedListener extends SparkListener {
--- End diff --

Complains about existential types if you access a method in an anonymous 
inner class


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393826
  
--- Diff: 
mllib/src/test/scala/org/apache/spark/ml/recommendation/ALSSuite.scala ---
@@ -601,7 +601,7 @@ class ALSSuite extends MLTest with DefaultReadWriteTest 
with Logging {
 val df = maybeDf.get._2
 
 val expected = estimator.fit(df)
-val actuals = dfs.filter(_ != baseType).map(t => (t, 
estimator.fit(t._2)))
+val actuals = dfs.map(t => (t, estimator.fit(t._2)))
--- End diff --

The filter here was nonsensical, comparing a value to type. Removed it as 
it's always true


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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
Github user srowen commented on a diff in the pull request:

https://github.com/apache/spark/pull/23065#discussion_r234393755
  
--- Diff: 
external/kinesis-asl/src/test/java/org/apache/spark/streaming/kinesis/JavaKinesisInputDStreamBuilderSuite.java
 ---
@@ -49,13 +51,14 @@ public void testJavaKinesisDStreamBuilder() {
   .checkpointInterval(checkpointInterval)
   .storageLevel(storageLevel)
   .build();
-assert(kinesisDStream.streamName() == streamName);
-assert(kinesisDStream.endpointUrl() == endpointUrl);
-assert(kinesisDStream.regionName() == region);
-assert(kinesisDStream.initialPosition().getPosition() == 
initialPosition.getPosition());
-assert(kinesisDStream.checkpointAppName() == appName);
-assert(kinesisDStream.checkpointInterval() == checkpointInterval);
-assert(kinesisDStream._storageLevel() == storageLevel);
+Assert.assertEquals(streamName, kinesisDStream.streamName());
--- End diff --

These assertions were wrong in two ways: == and assert


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[GitHub] spark issue #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous ...

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[GitHub] spark issue #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous ...

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[GitHub] spark pull request #23065: [SPARK-26090][CORE][SQL][ML] Resolve most miscell...

2018-11-16 Thread srowen
GitHub user srowen opened a pull request:

https://github.com/apache/spark/pull/23065

[SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous deprecation and 
build warnings for Spark 3

## What changes were proposed in this pull request?

The build has a lot of deprecation warnings. Some are new in Scala 2.12 and 
Java 11. We've fixed some, but I wanted to take a pass at fixing lots of easy 
miscellaneous ones here.

They're too numerous and small to list here; see the pull request. Some 
highlights:

- `@BeanInfo` is deprecated in 2.12, and BeanInfo classes are pretty 
ancient in Java. Instead, case classes can explicitly declare getters
- Lots of work in the Kinesis examples to update and avoid deprecation
- Eta expansion of zero-arg methods; foo() becomes () => foo() in many cases
- Floating-point Range is inexact and deprecated, like 0.0 to 100.0 by 1.0
- finalize() is finally deprecated (just needs to be suppressed)
- StageInfo.attempId was deprecated and easiest to remove here

I'm not now going to touch some chunks of deprecation warnings:

- Parquet deprecations
- Hive deprecations (particularly serde2 classes)
- Deprecations in generated code (mostly Thriftserver CLI)
- ProcessingTime deprecations (we may need to revive this class as internal)
- many MLlib deprecations because they concern methods that may be removed 
anyway
- a few Kinesis deprecations I couldn't figure out
- Mesos get/setRole, which I don't know well
- Kafka/ZK deprecations (e.g. poll())
- a few other ones that will probably resolve by deleting a deprecated 
method

## How was this patch tested?

Existing tests, including manual testing with the 2.11 build and Java 11.

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/srowen/spark SPARK-26090

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/spark/pull/23065.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #23065


commit e2e375b592ccbbf2e468736fb2ee00b33787c58e
Author: Sean Owen 
Date:   2018-11-17T02:50:57Z

Resolve most miscellaneous deprecations and some build warnings




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[GitHub] spark issue #23064: [MINOR][SQL] Fix typo in CTAS plan database string

2018-11-16 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/23064
  
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[GitHub] spark issue #23064: [MINOR][SQL] Fix typo in CTAS plan database string

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[GitHub] spark issue #23064: [MINOR][SQL] Fix typo in CTAS plan database string

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[GitHub] spark pull request #23064: [MINOR][SQL] Fix typo in CTAS plan database strin...

2018-11-16 Thread dongjoon-hyun
GitHub user dongjoon-hyun opened a pull request:

https://github.com/apache/spark/pull/23064

[MINOR][SQL] Fix typo in CTAS plan database string

## What changes were proposed in this pull request?

Since Spark 1.6.0, there was a redundant '}' character in CTAS string 
plan's database argument string; `default}`. This PR aims to fix it.

```scala
scala> sc.version
res1: String = 1.6.0

scala> sql("create table t as select 1").explain
== Physical Plan ==
ExecutedCommand CreateTableAsSelect [Database:default}, TableName: t, 
InsertIntoHiveTable]
+- Project [1 AS _c0#3]
   +- OneRowRelation$
```

## How was this patch tested?

Manual.

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/dongjoon-hyun/spark SPARK-FIX

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/spark/pull/23064.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #23064


commit ad971b668e05b93d54263ed87c9845d646085751
Author: Dongjoon Hyun 
Date:   2018-11-17T02:37:21Z

[MINOR][SQL] Fix typo in CTAS plan argString

```
scala> sql("create table t as select 1").explain
== Physical Plan ==
ExecutedCommand CreateTableAsSelect [Database:default}, TableName: t, 
InsertIntoHiveTable]
+- Project [1 AS _c0#3]
   +- OneRowRelation$

scala> sc.version
res1: String = 1.6.0
```




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[GitHub] spark issue #23030: [MINOR][YARN] Make memLimitExceededLogMessage more clean

2018-11-16 Thread SparkQA
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[GitHub] spark issue #23030: [MINOR][YARN] Make memLimitExceededLogMessage more clean

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[GitHub] spark issue #23061: [SPARK-26095][build] Disable parallelization in make-dis...

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[GitHub] spark issue #23061: [SPARK-26095][build] Disable parallelization in make-dis...

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[GitHub] spark issue #23061: [SPARK-26095][build] Disable parallelization in make-dis...

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 * This patch passes all tests.
 * This patch merges cleanly.
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