Re: [sage-release] Re: Sage 10.2.beta3 released
It's from homebrew's gcc. I did `brew reinstall gcc` followed by `make distclean && ./configure && make meson_python && make` and it still fails at scipy, same error. I removed the cached download file for homebrew's gcc and tried again, same result. I have not yet tried Sage's gcc. On Thursday, September 21, 2023 at 11:18:15 PM UTC-7 Dima Pasechnik wrote: > Where is gfortran coming from here? > Do you build it with Sage, or use an external one? > > If the external one, e.g. from Homebrew, you most probably need to > update/reinstall. > Ditto in Sage > > > On Fri, 22 Sept 2023, 00:52 John H Palmieri, wrote: > >> A new problem, after upgrading to OS X 13.6 and the newest version of the >> command-line tools: scipy fails to build again, this time with the error: >> >> ../../meson.build:82:0: ERROR: Unable to detect linker for compiler >> `gfortran -Wl,--version >> -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -Wl,-rpath,/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -Wl,-rpath,/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib` >> stdout: >> stderr: collect2 version 13.2.0 >> /usr/bin/ld -syslibroot >> /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/ -dynamic -arch arm64 >> -platform_version macos 13.0.0 0.0 -o a.out >> -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -L/opt/homebrew/Cellar/gcc/13.2.0/bin/../lib/gcc/current/gcc/aarch64-apple-darwin22/13 >> >> -L/opt/homebrew/Cellar/gcc/13.2.0/bin/../lib/gcc/current/gcc >> -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib >> -L/opt/homebrew/opt/primesieve/lib -L/opt/homebrew/opt/bdw-gc/lib >> -L/opt/homebrew/opt/libpng/lib -L/opt/homebrew/opt/ntl/lib >> -L/opt/homebrew/opt/bzip2/lib -L/opt/homebrew/opt/readline/lib >> -L/opt/homebrew/lib >> -L/opt/homebrew/Cellar/gcc/13.2.0/bin/../lib/gcc/current/gcc/aarch64-apple-darwin22/13/../../.. >> >> --version -rpath >> /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -rpath >> /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -lemutls_w >> -lgcc -lSystem -lgcc -no_compact_unwind -rpath @loader_path -rpath >> /opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/13 >> >> -rpath /opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc -rpath >> /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -rpath >> /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -rpath >> /opt/homebrew/Cellar/primesieve/11.1/lib -rpath >> /opt/homebrew/Cellar/bdw-gc/8.2.4/lib -rpath >> /opt/homebrew/Cellar/libpng/1.6.40/lib -rpath >> /opt/homebrew/Cellar/ntl/11.5.1/lib -rpath >> /opt/homebrew/Cellar/bzip2/1.0.8/lib -rpath >> /opt/homebrew/Cellar/readline/8.2.1/lib -rpath /opt/homebrew/lib -rpath >> /opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current >> ld: unknown options: --version >> collect2: error: ld returned 1 exit status >> >> Suggestions? >> >> On Sunday, September 17, 2023 at 11:25:02 AM UTC-7 John H Palmieri wrote: >> >>> Similar problem for me on OS X. I don't understand something: the >>> dependencies for scipy include meson_python, but that package is not >>> installed before scipy attempts to build, and fails. Running "make >>> meson_python" and then "make scipy" succeeds, as does "make". >>> >>> >>> >>> On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: >>> Succeeded after sage -pip install meson-python. On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: > Incremental build failed > > [scipy-1.11.2] > [..] > [scipy-1.11.2] scipy-1.11.2 > [scipy-1.11.2] > [sagelib-10.2.beta3] Removing file or directory > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link > [sagelib-10.2.beta3] Removing pth entries from > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: > [sagelib-10.2.beta3] Removing entry: > /Users/kwankyu/GitHub/sage-dev/src > [sagelib-10.2.beta3] Successfully uninstalled > sagemath-standard-10.2b3 > [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard > [sagelib-10.2.beta3] Running command python setup.py develop > [scipy-1.11.2] Setting up build directory for scipy-1.11.2 > [scipy-1.11.2] Finished extraction > [scipy-1.11.2] Applying patches from ../patches... > [scipy-1.11.2] Applying ../patches/numpy-include.patch > [scipy-1.11.2] patching file scipy/spatial/setup.py >
Re: [sage-release] Re: Sage 10.2.beta3 released
Where is gfortran coming from here? Do you build it with Sage, or use an external one? If the external one, e.g. from Homebrew, you most probably need to update/reinstall. Ditto in Sage On Fri, 22 Sept 2023, 00:52 John H Palmieri, wrote: > A new problem, after upgrading to OS X 13.6 and the newest version of the > command-line tools: scipy fails to build again, this time with the error: > > ../../meson.build:82:0: ERROR: Unable to detect linker for compiler > `gfortran -Wl,--version > -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -Wl,-rpath,/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -Wl,-rpath,/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib` > stdout: > stderr: collect2 version 13.2.0 > /usr/bin/ld -syslibroot > /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/ -dynamic -arch arm64 > -platform_version macos 13.0.0 0.0 -o a.out > -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -L/opt/homebrew/Cellar/gcc/13.2.0/bin/../lib/gcc/current/gcc/aarch64-apple-darwin22/13 > -L/opt/homebrew/Cellar/gcc/13.2.0/bin/../lib/gcc/current/gcc > -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -L/Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib > -L/opt/homebrew/opt/primesieve/lib -L/opt/homebrew/opt/bdw-gc/lib > -L/opt/homebrew/opt/libpng/lib -L/opt/homebrew/opt/ntl/lib > -L/opt/homebrew/opt/bzip2/lib -L/opt/homebrew/opt/readline/lib > -L/opt/homebrew/lib > -L/opt/homebrew/Cellar/gcc/13.2.0/bin/../lib/gcc/current/gcc/aarch64-apple-darwin22/13/../../.. > --version -rpath > /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -rpath > /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -lemutls_w > -lgcc -lSystem -lgcc -no_compact_unwind -rpath @loader_path -rpath > /opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/13 > -rpath /opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc -rpath > /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -rpath > /Users/palmieri/Desktop/Sage/TESTING/sage-10.2.beta3/local/lib -rpath > /opt/homebrew/Cellar/primesieve/11.1/lib -rpath > /opt/homebrew/Cellar/bdw-gc/8.2.4/lib -rpath > /opt/homebrew/Cellar/libpng/1.6.40/lib -rpath > /opt/homebrew/Cellar/ntl/11.5.1/lib -rpath > /opt/homebrew/Cellar/bzip2/1.0.8/lib -rpath > /opt/homebrew/Cellar/readline/8.2.1/lib -rpath /opt/homebrew/lib -rpath > /opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current > ld: unknown options: --version > collect2: error: ld returned 1 exit status > > Suggestions? > > On Sunday, September 17, 2023 at 11:25:02 AM UTC-7 John H Palmieri wrote: > >> Similar problem for me on OS X. I don't understand something: the >> dependencies for scipy include meson_python, but that package is not >> installed before scipy attempts to build, and fails. Running "make >> meson_python" and then "make scipy" succeeds, as does "make". >> >> >> >> On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: >> >>> Succeeded after sage -pip install meson-python. >>> >>> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: >>> Incremental build failed [scipy-1.11.2] [..] [scipy-1.11.2] scipy-1.11.2 [scipy-1.11.2] [sagelib-10.2.beta3] Removing file or directory /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link [sagelib-10.2.beta3] Removing pth entries from /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: [sagelib-10.2.beta3] Removing entry: /Users/kwankyu/GitHub/sage-dev/src [sagelib-10.2.beta3] Successfully uninstalled sagemath-standard-10.2b3 [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard [sagelib-10.2.beta3] Running command python setup.py develop [scipy-1.11.2] Setting up build directory for scipy-1.11.2 [scipy-1.11.2] Finished extraction [scipy-1.11.2] Applying patches from ../patches... [scipy-1.11.2] Applying ../patches/numpy-include.patch [scipy-1.11.2] patching file scipy/spatial/setup.py [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). [scipy-1.11.2] Applying ../patches/tests_no_internet_dependency.patch [scipy-1.11.2] patching file scipy/datasets/meson.build [scipy-1.11.2] [scipy-1.11.2] Host system: [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version 22.6.0: Wed Jul 5 22:21:56 PDT 2023; root:xnu-8796.141.3~6/RELEASE_X86_64 x86_64 [scipy-1.11.2]
