RE: sparkR issues ?

2016-03-18 Thread Sun, Rui
Kozlov <ale...@gmail.com>; roni <roni.epi...@gmail.com> Cc: user@spark.apache.org Subject: RE: sparkR issues ? I have submitted https://issues.apache.org/jira/browse/SPARK-13905 and a PR for it. From: Alex Kozlov [mailto:ale...@gmail.com] Sent: Wednesday, March 16, 2016 12:52

RE: sparkR issues ?

2016-03-15 Thread Sun, Rui
I have submitted https://issues.apache.org/jira/browse/SPARK-13905 and a PR for it. From: Alex Kozlov [mailto:ale...@gmail.com] Sent: Wednesday, March 16, 2016 12:52 AM To: roni <roni.epi...@gmail.com> Cc: Sun, Rui <rui@intel.com>; user@spark.apache.org Subject: Re: sparkR issue

Re: sparkR issues ?

2016-03-15 Thread Alex Kozlov
ame() >> in SparkR to avoid such covering. >> >> >> >> *From:* Alex Kozlov [mailto:ale...@gmail.com] >> *Sent:* Tuesday, March 15, 2016 2:59 PM >> *To:* roni <roni.epi...@gmail.com> >> *Cc:* user@spark.apache.org >> *Subject:* Re: sparkR is

Re: sparkR issues ?

2016-03-15 Thread roni
e if we can change the implementation of as.data.frame() > in SparkR to avoid such covering. > > > > *From:* Alex Kozlov [mailto:ale...@gmail.com] > *Sent:* Tuesday, March 15, 2016 2:59 PM > *To:* roni <roni.epi...@gmail.com> > *Cc:* user@spark.apache.org > *Subject:* Re: sparkR i

Re: sparkR issues ?

2016-03-15 Thread roni
Alex, No I have not defined he "dataframe" its the spark default Dataframe. That line is just casting Factor as datarame to send to the function. Thanks -R On Mon, Mar 14, 2016 at 11:58 PM, Alex Kozlov wrote: > This seems to be a very unfortunate name collision. SparkR

RE: sparkR issues ?

2016-03-15 Thread Sun, Rui
epi...@gmail.com> Cc: user@spark.apache.org Subject: Re: sparkR issues ? This seems to be a very unfortunate name collision. SparkR defines it's own DataFrame class which shadows what seems to be your own definition. Is DataFrame something you define? Can you rename it? On Mon, Mar 14, 2016 at

Re: sparkR issues ?

2016-03-15 Thread Alex Kozlov
This seems to be a very unfortunate name collision. SparkR defines it's own DataFrame class which shadows what seems to be your own definition. Is DataFrame something you define? Can you rename it? On Mon, Mar 14, 2016 at 10:44 PM, roni wrote: > Hi, > I am working

sparkR issues ?

2016-03-14 Thread roni
Hi, I am working with bioinformatics and trying to convert some scripts to sparkR to fit into other spark jobs. I tries a simple example from a bioinf lib and as soon as I start sparkR environment it does not work. code as follows - countData <- matrix(1:100,ncol=4) condition <-