Re: Sofa-unaware AEs that create new views in an AAE

2014-04-22 Thread Peter Klügl
Am 22.04.2014 18:20, schrieb Peter Klügl: Am 22.04.2014 18:10, schrieb Eddie Epstein: The current design supports passing a specific view to an annotator: map the desired view to the default view and do not declare the annotator view aware by declaring input or output sofas. An alternate

Re: Sofa-unaware AEs that create new views in an AAE

2014-04-17 Thread Peter Klügl
several times in an AAE for different views. Peter Eddie On Thu, Apr 17, 2014 at 8:04 AM, Peter Klügl pklu...@uni-wuerzburg.dewrote: Hi, as I understand the implementation, an AE is sofa aware if it specifies input or output views in its capabilities. Let's say it only specifies

Re: Sofa-unaware AEs that create new views in an AAE

2014-04-17 Thread Peter Klügl
btw, here's the StackOverflow question that caused me to investigate the problem: http://stackoverflow.com/questions/23002788/uima-ruta-sofa-mapping-in-aggregate-pipeline Peter Am 17.04.2014 14:04, schrieb Peter Klügl: Hi, as I understand the implementation, an AE is sofa aware

Re: Sofa-unaware AEs that create new views in an AAE

2014-04-17 Thread Peter Klügl
Am 17.04.2014 15:39, schrieb Richard Eckart de Castilho: On 17.04.2014, at 15:31, Peter Klügl pklu...@uni-wuerzburg.de wrote: That would work, if the modifier AEs that create new views are not cascaded. Btw: I think it would be great if UIMA did offer a mechanism that would allow an AE

[ANNOUNCE] Apache UIMA Ruta 2.2.0 released

2014-04-15 Thread Peter Klügl
fixes For a full list of the changes, please refer to Jira: http://uima.apache.org/d/ruta-2.2.0/issuesFixed/jira-report.html More information about UIMA Ruta can be found here: http://uima.apache.org/ruta.html - Peter Klügl, for the Apache UIMA development team -BEGIN PGP SIGNATURE

Re: New feeature in uima-ruta.

2014-04-07 Thread Peter Klügl
Hi, contributions are of course welcome. You can start a discussion on the developer list: d...@uima.apache.org Contributions are normally performed using Jira: https://issues.apache.org/jira/browse/uima You need to create an account, and then to create a new issue providing information about

Re: UIMA Ruta installation problems

2014-02-20 Thread Peter Klügl
Am 20.02.2014 08:50, schrieb Debbie Zhang: Hi all, Due to some restriction at work, I have to install UIMA Ruta on Eclipse manually. Although I have put in all required jar files to the plugins and features folders, it seems the plugins are not installed properly. I only First of all,

Re: UIMA Ruta Workbench picks up an incorrect descriptor path

2014-02-18 Thread Peter Klügl
Hi, this is probably caused by the absolute paths in the descriptor. Try to clean the project twice (Menu-Project-Clean) in order to regenerate the descriptors. In the next release, UIMA Ruta 2.2.0, this should never happen again. Best, Peter Am 18.02.2014 09:15, schrieb Debbie Zhang: Hi

Re: Ruta - Text Ruler - NullPointerException with the example project

2014-02-13 Thread Peter Klügl
Hi, Am 12.02.2014 23:57, schrieb Nicolas Hernandez: Hi everyone, I'm testing the TextRuler framework to induce annotation rules. In particular I follow the example in the documentation [1] which should works on the example project present in the svn repository [2]. Unfortunately, when I

Re: uima jcas get annotation type from string

2014-02-13 Thread Peter Klügl
maybe something like cas.getTypeSystem().getType(my.package.AnnotationName) Best, Peter Am 13.02.2014 14:03, schrieb hannes schantl: Hi, Is there a way to get an annotation Type from the cas(or Jcas) from a string. For example, i am looking for something like that:

JCAS Annotations vs CAS Annotations - Performance

2014-01-15 Thread Peter Klügl
Hi, does anyone have some experience on the performance difference of CAS annotations and JCAS annotations in real world applications? I created a trivial testbench that indicates that CAS annotations are bit faster, but I not sure if that holds for real applications. Best, Peter

Re: next UIMA workshop?

2014-01-14 Thread Peter Klügl
user list to get some input from them. The proposal draft is here: https://github.com/jgrivolla/coling2014-nlp-framework-workshop/blob/master/proposal.md -- Jens On 19/12/13 13:29, Jens Grivolla wrote: On 19/12/13 13:08, Peter Klügl wrote: Am 19.12.2013 12:31, schrieb Jens Grivolla: Ok

Re: next UIMA workshop?

2013-12-19 Thread Peter Klügl
Am 19.12.2013 12:31, schrieb Jens Grivolla: Ok, it's time to seriously get started on this. I guess we can start with the GSCL workshop description, and maybe make it more inclusive for other frameworks (GATE, etc.) We need a couple of organizers (me, Renaud, ...?) and a potential PC

Re: UIMA Ruta 2.1.0 Issues

2013-12-17 Thread Peter Klügl
ALL matches on all annotations and also on the SPECIAL annotations until the end of the document. Then, there is no SPECIAL annotation left to match and the rule fails. May I use your examples in a junit test case? Best, Peter Am 17.12.2013 17:45, schrieb Peter Klügl: Thanks, I will take

Re: UIMA Ruta 2.1.0 Issues

2013-12-17 Thread Peter Klügl
Hi, the problem with the rules throwing an exception is now fixed in the current trunk. Thanks for reporting it. Best, Peter Am 13.12.2013 16:37, schrieb Joerg Poecher: Hello, I would like to report some issues that occurred while testing the Ruta Workbench. There seems to be

Re: UIMA Ruta 2.1.0 Issues

2013-12-17 Thread Peter Klügl
Am 17.12.2013 18:14, schrieb Alexandre Patry: On 2013-12-17 12:10, Peter Klügl wrote: Am 17.12.2013 18:00, schrieb Alexandre Patry: On 2013-12-17 11:56, Peter Klügl wrote: Hi, some of the rules behave as expected. It's maybe a bit counterintuitive, but I do not see a way to improve it. I

Re: Problem writing ruta extensions

2013-12-07 Thread Peter Klügl
Am 05.12.2013 16:44, schrieb Alexandre Patry: On 2013-12-04 12:33, Sebastian wrote: Hi, I'm highly interested in ruta, and its potential applications in industrial applications. Right know I'm trying to create a simple toy condition extension that is simply a case insensitive INLIST

Re: Problem writing ruta extensions

2013-12-05 Thread Peter Klügl
Hi, Am 04.12.2013 18:33, schrieb Sebastian: Hi, I'm highly interested in ruta, and its potential applications in industrial applications. Right know I'm trying to create a simple toy condition extension that is simply a case insensitive INLIST condition. It is completely based on the

Re: Problem writing ruta extensions

2013-12-05 Thread Peter Klügl
Sorry, I read over the mention that it is only a toy extension... so maybe ignore the advice with the actions ;-) Can you check whether there is a Type in the typesystem with the short name MonthsList? Best, Peter Am 05.12.2013 09:58, schrieb Peter Klügl: Hi, Am 04.12.2013 18:33, schrieb

Re: Problem writing ruta extensions

2013-12-05 Thread Peter Klügl
Am 05.12.2013 14:43, schrieb Sebastian: Peter Klügl pkluegl@... writes: Hi, Am 04.12.2013 18:33, schrieb Sebastian: Hi, I'm highly interested in ruta, and its potential applications in industrial applications. Right know I'm trying to create a simple toy condition extension

Re: Annotation Editor will not accept TypeSystem importing Cleartk Type System

2013-11-28 Thread Peter Klügl
On 27.11.2013 21:39, Matthias Grabmair wrote: Hi all, I am relatively new to UIMA and am involved in a project where an annotated corpus needs to be developed. My TypeSystem.xml imports org.cleartk.TypeSystem, which works fine for TypeSystem editing purposes. However, I cannot edit a

Re: next UIMA workshop?

2013-10-22 Thread Peter Klügl
I also think that it is a good idea if we can expect enough submissions. However, I will not be able to organize it and cannot promise to submit something. Peter On 21.10.2013 11:44, Jens Grivolla wrote: Hi, at GSCL 2013 we talked a bit about options for the next UIMA workshop. How about

UIMA Ruta tutorial slides

2013-10-10 Thread Peter Klügl
Hi, the slides of the GSCL tutorial part II about UIMA Ruta are now available online: http://uima.apache.org/downloads/gscl2013/2013-GSCL-Ruta.pdf Best, Peter

Re: In need of good tutorials

2013-09-26 Thread Peter Klügl
Hallo, ich würde das 1-2 Wochen online lassen, aber dann mindesten ein paar Ruta Projekte rausnehmen. Ich will das nicht so lange online lassen, vor allem nicht ohne notice and license usw. Wär das OK für dich? Gruß, Peter On 26.09.2013 07:17, Richard Eckart de Castilho wrote: We put the

Re: Example ruta Eclipse project?

2013-09-22 Thread Peter Klügl
Hi, Am 22.09.2013 15:43, schrieb Anton Hughes: Hi I am trying to learn Uima Ruta, and while the documentation is very good, it would be very helpful if I had an example eclipse project. Does anyone have a sample project they can share with me? The trunk and the source release of UIMA Ruta

Re: Ruta 2.0.1

2013-09-16 Thread Peter Klügl
Hi, the wildcard # has some bugs in ruta 2.0.1, which have been fixed in ruta-2.1.0. It's hard to determine what the problem is. I created a small test set in ruta-2.1.0 and tested the rule. No problems observed. You might want to switch to ruta-2.1.0. There is a release candidate with an update

Call for Participation: 3rd UIMA@GSCL Workshop - 2013

2013-09-10 Thread Peter Klügl
-to-date) http://childrenshospital.org/cfapps/research/data_admin/Site3240/mainpageS3240P0.html ### Organizers and Contact ### Peter Klügl, Universität Würzburg Richard Eckart de Castilho, TU Darmstadt Katrin Tomanek, Averbis GmbH Please address any inquiries regarding the workshop

Re: [ruta] How to efficiently delete an annotation only if it appears within the N first token of a document?

2013-08-28 Thread Peter Klügl
On 28.08.2013 16:52, Alexandre Patry wrote: Hi, I use RUTA and I want to delete an annotation if it is within the first 50 tokens of a document. I came up with the following rules : ANY{POSITION(Document, 1)- Header};// Annotate the first token in the document

Re: [ruta] How to efficiently delete an annotation only if it appears within the N first token of a document?

2013-08-28 Thread Peter Klügl
On 28.08.2013 18:17, Alexandre Patry wrote: On 2013-08-28 11:25, Peter Klügl wrote: On 28.08.2013 16:52, Alexandre Patry wrote: Hi, I use RUTA and I want to delete an annotation if it is within the first 50 tokens of a document. I came up with the following rules : ANY{POSITION

Re: [ruta] How to efficiently delete an annotation only if it appears within the N first token of a document?

2013-08-28 Thread Peter Klügl
Am 28.08.2013 20:33, schrieb Alexandre Patry: On 2013-08-28 12:19, Peter Klügl wrote: On 28.08.2013 18:17, Alexandre Patry wrote: I will be happy to test drive MARKFIRST when it will be in trunk. It's already in the trunk. If you want, then I can also think of something that avoid

Re: Ruta with Eclipse Kepler installation problem

2013-07-25 Thread Peter Klügl
Hi, I have not yet used Kepler myself. I will take a look. Best, Peter On 25.07.2013 10:23, armin.weg...@bka.bund.de wrote: Hi, Ruta Workbench 2.0.1 can not be installed on Eclipse Kepler because the dependecy to DLTK are not matched. Any ideas? Armin

Deadline Extension: 3rd UIMA@GSCL Workshop - 2013

2013-07-13 Thread Peter Klügl
in Darmstadt in conjunction with GSCL 2013 ### Organizers and Contact ### Peter Klügl, Universität Würzburg Richard Eckart de Castilho, TU Darmstadt Katrin Tomanek, Averbis GmbH Please address any inquiries regarding the workshop to: uima.gscl2...@gmail.com ### Program Committee

Final Call for Papers: 3rd UIMA@GSCL Workshop - 2013

2013-07-09 Thread Peter Klügl
/conferences/?conf=uimagscl2013 ### Important Dates ### July, 12:Submission deadline August, 16: Notification of acceptance August, 31: Camera-ready deadline Sept, 23:Workshop held in Darmstadt in conjunction with GSCL 2013 ### Organizers and Contact ### Peter Klügl, Universität

Re: Using external engines in RUTA scripts

2013-06-26 Thread Peter Klügl
Hi, On 26.06.2013 09:33, Fouad HAMDI wrote: Hi, I am trying to use the Tika Annotator within RUTA scripts. Here is my current script: PACKAGE test; ENGINE tika.MarkupAnnotator; TYPESYSTEM tika.MarkupAnnotationTypeSystem; DECLARE Link; Document{- EXEC(MarkupAnnotator,

Re: Reusing engine annotation

2013-06-25 Thread Peter Klügl
Hi, the important part is missing in the documentation. Sorry for that, I will fix the documentation. EXEC has another parameter, a list of types, which are internally reindexed in Ruta. This is necessary for therule inference and conditions like PARTOF, which would be extremely inefficient

Call for papers: 3rd UIMA@GSCL Workshop - 2013

2013-06-19 Thread Peter Klügl
### Important Dates ### July, 12:Submission deadline August, 16: Notification of acceptance August, 31: Camera-ready deadline Sept, 23:Workshop held in Darmstadt in conjunction with GSCL 2013 ### Organizers and Contact ### Peter Klügl, Universität Würzburg Richard Eckart de Castilho, TU

Re: Ruta 2.0.2 Textruler problems

2013-06-10 Thread Peter Klügl
The code is of course wrong since the conditions are not part of the rule. I committed a new version. Can you please check if there are rules with features in the list rulesToTest now? Aren't there any new rules in the prior code? // first only add conditions, e.g., for features

Re: Ruta 2.0.2 Textruler problems

2013-06-10 Thread Peter Klügl
Can you check if the following code in TextRulerAnnotation (constructor) is used: if (consideredFeatures != null) { for (String string : consideredFeatures) { Feature feature = afs.getType().getFeatureByBaseName(string); if (feature != null feature.getRange().isPrimitive())

Re: Ruta 2.0.2 Textruler problems

2013-06-10 Thread Peter Klügl
On 10.06.2013 13:34, Sondes Bannour wrote: Yes it is called in getTermsWithinBounds(int, int, TextRulerExample) and getTermsAfter(WhiskRuleItem, TextRulerExample) functions. and do they actually store features in the map? Best, Peter Best, Sondes

Re: Ruta 2.0.2 Textruler problems

2013-06-10 Thread Peter Klügl
On 10.06.2013 15:29, Sondes Bannour wrote: sorry i didn't finish writing when i pushed send. Actually my types are Lemma (with feature lemma), Term (with features lemma and postag) and POSTag (with feature postag) and i was learning rules with the feature lemma only. And for this:

Re: Ruta 2.0.2 Textruler problems

2013-06-06 Thread Peter Klügl
On 06.06.2013 14:42, Sondes Bannour wrote: I may not have the right version of Ruta but in the 2.0.1 version the TextRulerExampleDocument.resetAndFillTestCAS() function is the same as the one i have. Where can i find the modifications you added? They are in the trunk:

Re: Ruta 2.0.2 Textruler problems

2013-06-05 Thread Peter Klügl
On 05.06.2013 15:22, Sondes Bannour wrote: Hi peter, Sorry i was a little busy. I think i can't open a jira issue since i am still working on the TextMarker 1.0 version and not on Ruta (TextRuler on Ruta doesn't work well). However i sent you in this mail the original TextRuler project and

Re: Ruta 2.0.2 Textruler problems

2013-06-03 Thread Peter Klügl
Hi, can you create a patch of your changes and attach it to a (new) jira issue. If it is OK for you, then I would try to integrate your changes and investigate that problem. I have taken a look at the whisk implementation this weekend and the 0/0 problem only occurred for bad rule anchoring,

Re: Ruta 2.0.2 Textruler problems

2013-06-02 Thread Peter Klügl
the problem without an actual use case. Can you provide a simple example? What is your learning configuration? My first guess would be that Lemma is also a target type. Are there any exceptions (log file) or errors (error view)? Best, Peter Am 31.05.2013 18:36, schrieb Peter Klügl: Hi

Re: Ruta 2.0.2 Textruler problems

2013-05-31 Thread Peter Klügl
Hi, this should of course not happen at all and can have many different reasons, most likely in the initialization in TextRuler. I have to take a look at the implementation and do some testing (will take some time). Best, Peter On 30.05.2013 17:14, Sondes Bannour wrote: Hello, I have a

[ANNOUNCE] Apache UIMA Ruta 2.0.1 released

2013-05-29 Thread Peter Klügl
when writing rules. Both the rule language and the workbench integrate smoothly with Apache UIMA. More information about UIMA Ruta can be found here: http://uima.apache.org/ruta.html - Peter Klügl, for the Apache UIMA development team -BEGIN PGP SIGNATURE- Version: GnuPG v2.0.17 (MingW32

Re: AW: AW: Ruta - MARKFAST

2013-05-23 Thread Peter Klügl
://tmwiki.informatik.uni-wuerzburg.de/. A more detailed description would be appreciated. This wiki refers to the old version hosted at sourceforge and should not be referred to. Best, Peter Thanks, Armin -Ursprüngliche Nachricht- Von: Peter Klügl [mailto:pklu...@uni-wuerzburg.de

Re: Ruta - Optional First Token Problem

2013-05-23 Thread Peter Klügl
Hi, On 23.05.2013 13:30, Peter Klügl wrote: Hi, On 23.05.2013 13:09, armin.weg...@bka.bund.de wrote: Hi! In Ruta 2.0.2-SNAPSHOT, rules with an optional first element do not work. The optional part seems to be mandatory. Using DECLARE Test; a? b c{-MARK(Test, 1, 3)}; I just wanted

Re: Ruta 2.0.2 Textruler problems

2013-05-23 Thread Peter Klügl
Hi, On 23.05.2013 13:49, Sondes Bannour wrote: Hi, I tried the textruler view (whisk (token) ) under Ruta 2.0.2 and i got weard results like rules with p=0 and n=0 while i fixed the maximum error threshold to 0.1. Whisk (generic) doesn't even work for me (it seems like crashing on the first

Re: Ruta - Optional First Token Problem

2013-05-23 Thread Peter Klügl
dynamic anchoring in order to change the matching direction. Here, the rules do not start with the first element, but choose the optimal element by a simple heuristic. Best, Peter On 23.05.2013 13:30, Peter Klügl wrote: Hi, On 23.05.2013 13:09, armin.weg...@bka.bund.de wrote: Hi! In Ruta 2.0.2

Re: AW: Ruta 2.0.2-SNAPSHOT - Eclipse Plugin Installation

2013-05-22 Thread Peter Klügl
, replacing the plugins might help. Best, Peter On 22.05.2013 12:34, armin.weg...@bka.bund.de wrote: Hi Peter, the eclipse update site does not work. Eclipse does not recognize it as an udpate site. Cheers, Armin -Ursprüngliche Nachricht- Von: Peter Klügl [mailto:pklu...@uni

Re: AW: Ruta - MARKFAST

2013-05-22 Thread Peter Klügl
, Armin -Ursprüngliche Nachricht- Von: Peter Klügl [mailto:pklu...@uni-wuerzburg.de] Gesendet: Dienstag, 21. Mai 2013 19:58 An: user@uima.apache.org Betreff: Re: Ruta - MARKFAST Hi, On 21.05.2013 15:49, armin.weg...@bka.bund.de wrote: Hello! Is there any possibility to match

Re: Ruta 2.0.2-SNAPSHOT - Eclipse Plugin Installation

2013-05-21 Thread Peter Klügl
Hi, On 21.05.2013 09:18, armin.weg...@bka.bund.de wrote: Hi! I've checkout Ruta 2.0.2-SNAPSHOT with svn checkout https://svn.apache.org/repos/asf/uima/sandbox/ruta/trunk and build it succesfully with mvn clean install. Now, how to install the Eclipse plugins? Is there a local reposity

Re: Ruta - Token Order

2013-05-21 Thread Peter Klügl
Hi, On 21.05.2013 12:47, armin.weg...@bka.bund.de wrote: Hi, In Ruta 2.0.2-SNAPSHOT a token with begin offset 0 and end offset 2 comes before a token with begin offset 0 and end offset 0. The token order is not as I expected. Thus in my case, SourceDocumentAnnotation was the second token

Re: Changing the original text based on annotations

2013-05-21 Thread Peter Klügl
On 20.05.2013 23:01, GATE User wrote: Thanks Richard and Peter: What I want to be able to do is, when the xml is returned, a program should then be able to find the corrected message and use that for future operations. Will using views allow this? Is it simply easier to just make a new

Re: AW: Ruta - Token Order

2013-05-21 Thread Peter Klügl
Hi, On 21.05.2013 13:52, Peter Klügl wrote: Hi, On 21.05.2013 13:49, armin.weg...@bka.bund.de wrote: Hi Peter, I think that the rule doesn't matter. But I tried to find calender dates. To find out what was going wrong I reduced the original more complex rule to DECLARE Date; Document

Re: Ruta - MARKFAST

2013-05-21 Thread Peter Klügl
Hi, On 21.05.2013 15:49, armin.weg...@bka.bund.de wrote: Hello! Is there any possibility to match strings like nC. v. Chr. with MARKFAST? Yes. Did you observe any problems? I just tested it with: Wordlist: nC. v. Chr. Input document: nC. v. Chr. n C . v . Chr. Script: PACKAGE

Re: Changing the original text based on annotations

2013-05-20 Thread Peter Klügl
Hi, UIMA Ruta (originally released as UIMA TextMarker) provides functionality for modifications in the document (in a new view) and for transforming the offsets of the annotations when the document is changed. However, both are not yet linked. There is a short introduction in modification

Re: Ruta 2.0.2 - Grouping Problems

2013-05-17 Thread Peter Klügl
Hi, sorry for that. I will fix it ASAP. The last rule has only three rule elements, but that should not throw an exception. Best, Peter On 17.05.2013 12:34, armin.weg...@bka.bund.de wrote: Hello! Let A, B, C, D and F denote type names. Then, A B? C D{-MARK(F, 1, 4)} works. A (B)? C

Re: Ruta 2.0.2 - Grouping Problems

2013-05-17 Thread Peter Klügl
Hi, the problem should be fixed now. Best, Peter On 17.05.2013 12:53, Peter Klügl wrote: Hi, sorry for that. I will fix it ASAP. The last rule has only three rule elements, but that should not throw an exception. Best, Peter On 17.05.2013 12:34, armin.weg...@bka.bund.de wrote

Re: Extending TextMarker with new actions

2013-05-09 Thread Peter Klügl
Hi, feature assignments for simple regexp rules are now part of the trunk. RegExpRuleTest.ruta contains an example and the documentation describes the exact syntax. Best, Peter On 08.05.2013 17:56, William Karl Thompson wrote: Many thanks! -Original Message- From: Peter Klügl

Re: Textmarker/Ruta - negative look behind/ahead

2013-05-08 Thread Peter Klügl
Hi, no, there is no direct negative match support (actually, there has been one, but it was removed). What you can do is just use the positive matches with additional conditions, e.g., something like: Person ANY{-STARTSWITH(Org)}; // additional rule element Person{-NEAR(Org, 0, 4, true)}; //

Re: Ruta 2.0.1-SNAPSHOT - CVS directory exception

2013-05-07 Thread Peter Klügl
(RutaLauncher.java:149) at org.apache.uima.ruta.ide.launching.RutaLauncher.main(RutaLauncher.java:119) Cheers, Armin -Ursprüngliche Nachricht- Von: Peter Klügl [mailto:pklu...@uni-wuerzburg.de] Gesendet: Montag, 6. Mai 2013 10:56 An: user@uima.apache.org Betreff: Re: AW

Re: AW: Textmarker - Qualification of Types

2013-05-06 Thread Peter Klügl
just failed. Best, Peter On 06.05.2013 07:53, armin.weg...@bka.bund.de wrote: Hi Peter, That is fine. I'm using 2.0.0 core jar from maven central. Can you give me a snapshot update site, please? Thank you, Armin -Ursprüngliche Nachricht- Von: Peter Klügl [mailto:pklu...@uni

Re: AW: Textmarker - Qualification of Types

2013-05-06 Thread Peter Klügl
Hi, I should have mentioned that you can update your old textmarker projects to new UIMA Ruta project with a context action: right-click on an old project and select UIMA Ruta - Update Project Best, Peter On 06.05.2013 10:56, Peter Klügl wrote: Hi, a snapshot update site is here: http

Re: Textmarker - Qualification of Types

2013-05-03 Thread Peter Klügl
Hi, On 03.05.2013 13:52, armin.weg...@bka.bund.de wrote: Hi, I'm running Textmarker on a CAS XMI file with a lot of annotations from different annotators and different type systems. There are some type names used more than once, but with different name spaces. All types are defined in

Re: Textmarker - Qualification of Types

2013-05-03 Thread Peter Klügl
Hi, it's fixed now in the trunk. Which version do you use? Just let me know if you need a snapshot update site or help with the new projects. Best, Peter On 03.05.2013 14:28, Peter Klügl wrote: Hi, On 03.05.2013 13:52, armin.weg...@bka.bund.de wrote: Hi, I'm running Textmarker on a CAS

Re: Extending TextMarker with new actions

2013-05-02 Thread Peter Klügl
26, 2013 3:40 PM To: user@uima.apache.org Subject: RE: Extending TextMarker with new actions Hi Peter, Thanks very much, I will try this out! Best, Will -Original Message- From: Peter Klügl [mailto:pklu...@uni-wuerzburg.de] Sent: Friday, April 26, 2013 4:30 AM To: user

Re: Extending TextMarker with new actions

2013-05-02 Thread Peter Klügl
://docs.oracle.com/javase/1.5.0/docs/api/java/util/regex/Matcher.html#find() Anyway, thanks again for your help getting this all working. Cheers, Will From: Peter Klügl [pklu...@uni-wuerzburg.de] Sent: Monday, April 29, 2013 4:20 PM To: user@uima.apache.org

Re: Extending TextMarker with new actions

2013-05-02 Thread Peter Klügl
) Peter -Original Message- From: Peter Klügl [mailto:pklu...@uni-wuerzburg.de] Sent: Thursday, May 02, 2013 12:14 PM To: user@uima.apache.org Subject: Re: Extending TextMarker with new actions Hi, oh, I am afraid I recently added something like that for the 2.0.1 release, not yet included

Re: Textmarker: delete contained annotations

2013-05-01 Thread Peter Klügl
Hi, Am 01.05.2013 04:57, schrieb William Karl Thompson: Hi, I'm working with the cTAKES pipeline to annotate some clinical text. The cTAKES syntactic chunker generates overlapping and nested annotations with the same syntactic type. For example: [NP ascending [NP colon polyps]] What I

Re: Common type system for source code and CAS editor or Textmarker

2013-04-29 Thread Peter Klügl
Hi, Am 29.04.2013 17:16, schrieb armin.weg...@bka.bund.de: Hi! The CAS editor and Textmarker are some fine Eclipse plugins to view the results. But I haven't yet managed to build a type system which works in java code and in the editors? There's always something wrong with the paths, either

Re: Extending TextMarker with new actions

2013-04-29 Thread Peter Klügl
- From: Peter Klügl [mailto:pklu...@uni-wuerzburg.de] Sent: Friday, April 26, 2013 4:30 AM To: user@uima.apache.org Subject: Re: Extending TextMarker with new actions Hi, On 25.04.2013 19:16, William Karl Thompson wrote: Hi Peter, Many thanks! I was just about to try it out before reading

Re: Extending TextMarker with new actions

2013-04-26 Thread Peter Klügl
in the same sentence). The current cTAKES relation extractor is based on machine learning, and requires an annotated corpus for training, whereas sometimes it's just easier to create a set of rules. Cheers, Will -Original Message- From: Peter Klügl [mailto:pklu...@uni-wuerzburg.de] Sent

Re: Extending TextMarker with new actions

2013-04-25 Thread Peter Klügl
Hi, Am 25.04.2013 03:29, schrieb William Karl Thompson: Hello, (My apologies, I mistakenly sent this to the dev list initially) I'm very interested in using the TextMarker project, but the current set of action types doesn't quite do what I need. I found references to an extension

Re: Extending TextMarker with new actions

2013-04-25 Thread Peter Klügl
Hi, I checked the language extensions and unfortunately they do not work right now. There are some small bugs, but they will be fixed tomorrow. Best, Peter Am 25.04.2013 11:37, schrieb Peter Klügl: Hi, Am 25.04.2013 03:29, schrieb William Karl Thompson: Hello, (My apologies, I

[VOTE] New name for UIMA TextMarker

2013-04-18 Thread Peter Klügl
Hi, we are currently looking for a new name for the Apache UIMA TextMarker system (language and workbench) and invite the UIMA comunity to vote for a name. This is not a formal vote. The vote should be cast for one of the following options, but is not limited to those. Option 1: name:

Re: TextMarker rules and disjunctive match

2013-04-08 Thread Peter Klügl
Hi, Am 05.04.2013 09:23, schrieb Laurent Audibert: Hi all and thanks for the good job on TextMarker. I would like to write a rule using a disjunction on the type match rather than annotation within a given type. For example, I would like to factorise two rules like : Token{REGEXP(human)}

Multi-view CAS and sofa-unaware AE

2013-04-03 Thread Peter Klügl
Hi, sorry for this beginner question: It there a shortcut to apply a sofa-unaware AE on CAS view that is not the _InitialView? It seems quite cumbersome to programmatically generate an aggregate analysis engine description to wrap to sofa-unaware engine. Best, Peter

Re: Textmarker accessing different view

2013-03-26 Thread Peter Klügl
Hi Peter, there are two parts: the analysis engine and the Workbench. The TextMarker analysis engine is not sofa-aware. You should be able to use the sofa mapping [1] in an aggregate analysis engine for assigning any view to the _initialView of the TextMarker analysis engine. The TextMarker

[ANNOUNCE] Apache UIMA TextMarker 2.0.0 released

2013-03-07 Thread Peter Klügl
the TextMarker rule language and the TextMarker Workbench integrate smoothly with Apache UIMA. This is the first release. More information about UIMA TextMarker can be found here: http://uima.apache.org/textmarker.html - Peter Klügl, for the Apache UIMA development team signature.asc Description

Re: TextMarker types, JCasGenPomFriendly and Maven

2012-12-14 Thread Peter Klügl
Hi, thanks for the pointer. I will attend this problem. I already prepared information about building TextMarker, but I am still thinking about the best location to publish it. After uimaFIT has arrived at Apache UIMA, I will also take care that TextMarker will work together with uimaFIT more

Re: TextMARKER Block statement

2012-12-14 Thread Peter Klügl
Hi, No, you are completely right and that should work just fine. Normally, if something like this happens, then it is caused by the filtering setting. Have you checked if the head rule of the block (Sentence) tries to match on all sentences? Just debug the script in the Workbench, open the

Re: TextMarker language workthrough for text simplification example?

2012-11-19 Thread Peter Klügl
I can see only one attached file: TextSimplifier.xml Can you send me the input file, the rules and the type systems. Peter On 19.11.2012 13:45, Monaghan, Fergal wrote: I've attached here the descriptor (TextSimplifier.xml: configuration for TextMarkerEngine), the test input data

Re: TextMarker language workthrough for text simplification example?

2012-11-19 Thread Peter Klügl
{ - MATCHEDTEXT(anchorString)}; RCHead{ - REPLACE( + tailString + + anchorString)}; RCBodyEnd{ - REPLACE(.)}; Tail{ - DEL}; } Document{ - EXEC(Modifier)}; On 19.11.2012 18:10, Peter Klügl wrote: Hi Fergal, I played a bit around and attached the resulting TextMarker project. The first part

Re: f-score evaluation tool?

2012-11-09 Thread Peter Klügl
Roberto Franchini: On Tue, Nov 6, 2012 at 11:25 AM, Peter Klügl pklu...@uni-wuerzburg.de wrote: Without going in an in-depth comparison : Behemoth ( https://github.com/DigitalPebble/behemoth) can be used to deploy your UIMA or GATE pipelines over a Hadoop cluster so both tools are on an equal footing

Re: f-score evaluation tool?

2012-11-06 Thread Peter Klügl
Without going in an in-depth comparison : Behemoth ( https://github.com/DigitalPebble/behemoth) can be used to deploy your UIMA or GATE pipelines over a Hadoop cluster so both tools are on an equal footing from that point of view. UIMA-AS can be used for non-batch, low-latency processing, there

Re: CAS Editor Plugin

2012-08-08 Thread Peter Klügl
and AnnotationFS has been imported. Any ideas/suggestions would be appreciated? Thanks, Alan -- - Dipl.-Inf. Peter Klügl Universität WürzburgTel.: +49-(0)931-31-86741 Am Hubland Fax.: +49-(0)931-31-86732

Re: CAS Editor instructions

2012-04-21 Thread Peter Klügl
. :) -- - Dipl.-Inf. Peter Klügl Universität WürzburgTel.: +49-(0)931-31-86741 Am Hubland Fax.: +49-(0)931-31-86732 97074 Würzburg mail: pklu...@informatik.uni-wuerzburg.de http

Re: Tool for viewing views other than _InitialView

2011-12-29 Thread Peter Klügl
Hi, the CAS Editor already supports this, as far as I know. If you open a xmiCAS and right-click on the editor, then there is an option to select the view. That should work, but I haven't used it myself yet. Regards, Peter Am 29.12.2011 09:42, schrieb armin.weg...@bka.bund.de: Hello! Is

Re: create html annotation viewer from CAS

2011-11-28 Thread Peter Klügl
-- - Dipl.-Inf. Peter Klügl Universität WürzburgTel.: +49-(0)931-31-86741 Am Hubland Fax.: +49-(0)931-31-86732 97074 Würzburg mail: pklu...@informatik.uni-wuerzburg.de http://www.is.informatik.uni-wuerzburg.de

Re: CAS Editor questions

2011-01-25 Thread Peter Klügl
with an external definition, for example with a style map? Peter Am 25.01.2011 13:15, schrieb Peter Klügl: Hello, how can I open a xmiCAS that's not in a corpus folder? I'm using the version of the current update site. Is this functionality aldready included there or not until the next

Re: CAS Editor type system questions

2011-01-20 Thread Peter Klügl
Hello, I think (not sure though) that you can somehow open an XMI file with data that's not in the type system, and populate the CAS only with the known data without throwing an error. --Thilo Yes, that's what I'm normally doing. If you just create a new CAS with a given type system and

Type Priorities, Analysis Engines and one CAS

2010-11-17 Thread Peter Klügl
-- - Dipl.-Inf. Peter Klügl Universität WürzburgTel.: +49-(0)931-31-86741 Am Hubland Fax.: +49-(0)931-31-86732 97074 Würzburg mail: pklu...@informatik.uni-wuerzburg.de http://www.is.informatik.uni

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