Heiko Nieke writes:
>
> Hi,
>
> as I am relatively new to Perl it would be great if anybody of you could
> help me to solve the following problem:
>
> Description of the problem:
>
> - I would like to read a sequence in Fasta Format (stored as text file
> on a local hard disk)
>
> e.g
> > Test1
> AGTGGTGCAGTGCGTCGTTTTTGCAGTCCC.....
>
> - Then I would like to search for a certain pattern within the sequence
> (e.g. AGTG).
>
> --> I know how to do that but now comes my question
>
> What modules do I need to graphically display all found patterns within
> the queried sequence?
>
> Example for the output on the screen:
> >Test1
> AGTGGTGCAGTGCGTCGTTTTTGCAGTCCC....
>
> Is there same code (examples) available?
There are quite a few modules on CPAN that help with bioinformatics,
see:
http://search.cpan.org/search?mode=module&query=bio
There is also a recent book, see:
http://www.amazon.com/exec/obidos/ASIN/0970029721/qid=1021389216/sr=8-3/ref=sr_8_3/002-4920686-6749615
HTH
--
Brian Raven
Yes, we have consensus that we need 64 bit support. :-)
-- Larry Wall in <[EMAIL PROTECTED]>
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