On Aug 18, 2009, at 5:30 PM, Fei Shi wrote: > Hi, Dear perl experts: > > I am a new hand of perl. I use perl because I am trying to > use a package called "miRDeep". I install the activeperl 5.10 for > windows. Then I used the MS DOS to try perl. > > But there is an error coming out when I tried to run this > command their demo: "perl auto_blast.pl 454_aligned.fa precursors. > fa-b > signatures". > > The error message is as follows: > Copying subject file 'cp' is not recognized as an internal or > external command, operable program or batch file. > formatting subject file [NULL_Caption] ERROR: Could not open > blast_dir_temp/file_subject > > Blasting query file against subject file > [NULL_Caption] WARNING: readdb: wrong version of formatdb was used > to make database blast_dir_temp/file_subject. > [NULL_Caption] WARNING: bartel_100023_x1: readdb: wrong version of > formatdb was used to make database blast_dir_temp/file_subject. > Parsing blast output: > 'cat' is not recognized as an internal or external command, > operable program or batch file. > 'cat' is not recognized as an internal or external command, > operable program or batch file. > 'cat' is not recognized as an internal or external command, > operable program or batch file. > 'rm' is not recognized as an internal or external command, > operable program or batch file. > 'rm' is not recognized as an internal or external command, > operable program or batch file. > > But I think the perl code "auto_blast.pl" is tested maturely by the > author of the package so I am suspicious that there may be something > wrong with my system? > The MS DOS is 5.1.2600 by windows XP. I wonder if the above error > message due to this or other reasons? I really appreciate if someone > can point me out of this and give me a clue of the problem.
This is not a pure Perl program, but a mixed Perl-and-Unix program. -- John W Kennedy Having switched to a Mac in disgust at Microsoft's combination of incompetence and criminality. _______________________________________________ ActivePerl mailing list [email protected] To unsubscribe: http://listserv.ActiveState.com/mailman/mysubs
