I have a java project that publishes a few different configurations. When I 
have an android project depend on one of these, it seems to pull in all the 
transient compile dependencies

I think this is a bug.

For example, if I have a java project that I publish a jar with all 
upstream dependencies under a new configuration called jarWithDependencies

    compile project(path:":my:java:library", 
configuration:"jarWithDependencies")

Would end up with a dex exception because it finds the dependency in the 
jarWithDependencies & also pulls in that dependency...

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