Anyone know how to get my program to run on bare metal?

Or at the very least tell Linux that my program is the most important thing in 
the world and service it above all other things.

I am trying to create a timing signal with the Pi.  It is doing it but the 
jitter is pretty bad.  

I have researched trying to use an interrupt but there is a pretty low limit on 
how many times per second you can fire a hardware interrupt.
Too low for my application.  

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