Hi,
Yes, I found "apache-airavata-0.2-incubating-SNAPSHOT-bin.tar.gz" in
"airavata-trunk/modules/distribution/target".
And FYI, after started jackrabbit-server and airavata-server, I periodically
see this exception in command line. So far, I haven't interacted with service
yet.
3602507 [Thread-4] ERROR
org.apache.airavata.wsmg.commons.storage.ConnectionPool - Cannot close a
connection while a transaction is still active.
java.sql.SQLException: Cannot close a connection while a transaction is still
active.
at
org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown
Source)
at org.apache.derby.impl.jdbc.EmbedConnection.newSQLException(Unknown
Source)
at
org.apache.derby.impl.jdbc.EmbedConnection.checkForTransactionInProgress(Unknown
Source)
at org.apache.derby.impl.jdbc.EmbedConnection.close(Unknown Source)
at
org.apache.airavata.wsmg.commons.storage.ConnectionPool.closeStaleConnections(ConnectionPool.java:244)
at
org.apache.airavata.wsmg.commons.storage.ConnectionPool.access$200(ConnectionPool.java:40)
at
org.apache.airavata.wsmg.commons.storage.ConnectionPool$CleanUpThread.run(ConnectionPool.java:335)
at java.lang.Thread.run(Thread.java:619)
Caused by: java.sql.SQLException: Cannot close a connection while a transaction
is still active.
at
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at
org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown
Source)
... 11 more
3630031 [Thread-14] INFO org.apache.airavata.wsmg.commons.storage.JdbcStorage -
Problem: 0 rows affected by insert/update/delete statement.
Thanks
Ye
On Feb 3, 2012, at 2:09 PM, Lahiru Gunathilake wrote:
> Hi Ye,
>
> Please find the binary pack get created after a successful build in
> airavata/trunk/modules/distribution/target and follow the article with the
> zip/tar.gz created.
>
> Lahiru
>
> On Fri, Feb 3, 2012 at 12:41 PM, Suresh Marru <[email protected]> wrote:
>
>> Hi Ye,
>>
>> Once your build is successful you will see a
>> apache-airavata-0.3-incubating-bin.zip (or tar.gz), once you untar it you
>> will now see the binary environment the tutorials points to. We will update
>> this in the document. The scripts within this binary should point to right
>> paths. Let us know is you are still having problems with them.
>>
>> Suresh
>>
>> On Feb 3, 2012, at 12:27 PM, Fan, Ye wrote:
>>
>>> Marlon,
>>>
>>> Yes, I've already seen those documents. The thing is there is no
>> downloadable release version now. So I didn't see those scripts earlier.
>> Anyway, I found them in
>> "airavata-trunk/modules/distribution/src/main/resources/bin" now and tried
>> to run it:
>>> "./airavata-server.sh: line 21: cd:
>> /home/gridchem/airavata-trunk/modules/distribution/src/main/resources/standalone-server/bin:
>> No such file or directory
>>> ./airavata-server.sh: line 22: ./axis2server.sh: No such file or
>> directory"
>>>
>>> It looks like "$AIRAVATA_HOME" is not set correctly since I saw "cd
>> $AIRAVATA_HOME/standalone-server/bin" in airavata-server.sh. So, what
>> should it be in self-build situation?
>>>
>>> Suresh,
>>>
>>> I did clean install.
>>>
>>> Saminda,
>>>
>>> Will give it a try later.
>>>
>>> Thanks
>>> Ye
>>>
>>>
>>> On Feb 3, 2012, at 10:54 AM, Marlon Pierce wrote:
>>>
>>>> -----BEGIN PGP SIGNED MESSAGE-----
>>>> Hash: SHA1
>>>>
>>>> Hi Ye, see
>> http://incubator.apache.org/airavata/documentation/system/airavata-in-5-minutes.htmland
>> http://incubator.apache.org/airavata/documentation/system/airavata-in-10-minutes.html
>>>>
>>>>
>>>> Marlon
>>>>
>>>>
>>>> On 2/3/12 11:51 AM, Fan, Ye wrote:
>>>>> The build without test passed.
>>>>>
>>>>> Can you please tell me what service I need to start to actually run a
>> workflow in XBaya?
>>>>>
>>>>> I have these folder in "modules".
>>>>>
>>>>> "commons distribution gfac-axis2 gfac-core test-suite
>> workflow-interpreter ws-messenger xbaya-gui"
>>>>>
>>>>> Thanks
>>>>> Ye
>>>>>
>>>>> On Feb 3, 2012, at 10:27 AM, Fan, Ye wrote:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I've update the code and tried to rebuild the code again. Still no
>> good. Will try to build without test.
>>>>>>
>>>>>> Error:
>>>>>>
>>>>>> .......
>>>>>> .......
>>>>>> Caused by: org.apache.jackrabbit.core.config.ConfigurationException:
>> Workspace directory already exists: default
>>>>>> at
>> org.apache.jackrabbit.core.config.RepositoryConfig.internalCreateWorkspaceConfig(RepositoryConfig.java:732)
>>>>>> at
>> org.apache.jackrabbit.core.config.RepositoryConfig.createWorkspaceConfig(RepositoryConfig.java:866)
>>>>>> at
>> org.apache.jackrabbit.core.config.RepositoryConfig.init(RepositoryConfig.java:594)
>>>>>> at
>> org.apache.jackrabbit.core.config.RepositoryConfig.create(RepositoryConfig.java:347)
>>>>>> at
>> org.apache.jackrabbit.core.config.RepositoryConfig.install(RepositoryConfig.java:157)
>>>>>> at
>> org.apache.jackrabbit.core.TransientRepository$3.getRepository(TransientRepository.java:250)
>>>>>> ... 36 more
>>>>>> java.lang.NullPointerException
>>>>>> Tests run: 2, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.218
>> sec <<< FAILURE!
>>>>>> .......
>>>>>> .......
>>>>>> .......
>>>>>> Tests run: 11, Failures: 3, Errors: 0, Skipped: 0
>>>>>>
>>>>>> [INFO]
>> ------------------------------------------------------------------------
>>>>>> [INFO] Reactor Summary:
>>>>>> [INFO]
>>>>>> [INFO] Airavata .......................................... SUCCESS
>> [7.628s]
>>>>>> [INFO] Airavata Commons .................................. SUCCESS
>> [0.116s]
>>>>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS
>> [31.148s]
>>>>>> [INFO] Airavata Common Utilities ......................... SUCCESS
>> [7.114s]
>>>>>> [INFO] Airavata Common Registry API ...................... SUCCESS
>> [6.834s]
>>>>>> [INFO] Airavata Registry API ............................. FAILURE
>> [21.393s]
>>>>>> [INFO] Airavata Workflow Execution Context ............... SKIPPED
>>>>>> [INFO] Airavata-WS-Messenger ............................. SKIPPED
>>>>>> [INFO] Messenger Commons ................................. SKIPPED
>>>>>> [INFO] Messenger Client .................................. SKIPPED
>>>>>> [INFO] Airavata Workflow Tracking ........................ SKIPPED
>>>>>> [INFO] GFac-Core ......................................... SKIPPED
>>>>>> [INFO] GFac-Axis2-Interface .............................. SKIPPED
>>>>>> [INFO] MessageBox ........................................ SKIPPED
>>>>>> [INFO] Message Broker .................................... SKIPPED
>>>>>> [INFO] distribution ...................................... SKIPPED
>>>>>> [INFO] Airavata XBaya .................................... SKIPPED
>>>>>> [INFO] Simple Math Service ............................... SKIPPED
>>>>>> [INFO] Complex Math Service .............................. SKIPPED
>>>>>> [INFO] Levenshtein Distance Service ...................... SKIPPED
>>>>>> [INFO] distribution ...................................... SKIPPED
>>>>>> [INFO] Test-Suite ........................................ SKIPPED
>>>>>> [INFO]
>> ------------------------------------------------------------------------
>>>>>> [INFO] BUILD FAILURE
>>>>>> [INFO]
>> ------------------------------------------------------------------------
>>>>>> [INFO] Total time: 1:16.010s
>>>>>> [INFO] Finished at: Fri Feb 03 16:10:08 EST 2012
>>>>>> [INFO] Final Memory: 35M/85M
>>>>>> [INFO]
>> ------------------------------------------------------------------------
>>>>>> [ERROR] Failed to execute goal
>> org.apache.maven.plugins:maven-surefire-plugin:2.10:test (default-test) on
>> project registry-api: There are test failures.
>>>>>> [ERROR]
>>>>>> [ERROR] Please refer to
>> /home/gridchem/airavata-trunk/modules/commons/registry-api/target/surefire-reports
>> for the individual test results.
>>>>>>
>>>>>> Thanks
>>>>>> Ye
>>>>>>
>>>>>>
>>>>>> On Feb 2, 2012, at 10:22 PM, Lahiru Gunathilake wrote:
>>>>>>
>>>>>>> Hi Ye,
>>>>>>>
>>>>>>> Just fixed the build error, please take svn up and build again, if
>> you
>>>>>>> have any further issues, please post in to the list..
>>>>>>>
>>>>>>> Regards
>>>>>>> Lahiru
>>>>>>>
>>>>>>> On Thu, Feb 2, 2012 at 5:41 PM, Heshan Suriyaarachchi <
>>>>>>> [email protected]> wrote:
>>>>>>>
>>>>>>>> Hi Ye,
>>>>>>>>
>>>>>>>> You can skip the test and build using the following command.
>>>>>>>> mvn clean install -Dmaven.test.skip=true
>>>>>>>>
>>>>>>>> I came across this test failure now. We will have a look at it. In
>> the
>>>>>>>> meantime, if you need to try out a stable version you can have a
>> look at
>>>>>>>> the branch[1].
>>>>>>>>
>>>>>>>> [1] -
>>>>>>>>
>>>>>>>>
>> https://svn.apache.org/repos/asf/incubator/airavata/branches/0.2-incubating-SNAPSHOT
>>>>>>>>
>>>>>>>> On Thu, Feb 2, 2012 at 5:10 PM, Heshan Suriyaarachchi <
>>>>>>>> [email protected]> wrote:
>>>>>>>>
>>>>>>>>> Hi Ye,
>>>>>>>>>
>>>>>>>>> Thanks for your interest in Airavata. Can you have a look at the
>> logs in
>>>>>>>>> directory /home/gridchem/airavata-trunk/
>>>>>>>>> modules/ws-messenger/messagebox/target/surefire-reports and see
>> what
>>>>>>>> tests
>>>>>>>>> are failing.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Thu, Feb 2, 2012 at 4:51 PM, Fan, Ye <[email protected]>
>> wrote:
>>>>>>>>>
>>>>>>>>>> Hi,
>>>>>>>>>>
>>>>>>>>>> I'm Ye Fan from NCSA at University of Illinois at
>> Urbana-Champaign. I'm
>>>>>>>>>> trying to get the Aivarata workflow suite running on
>>>>>>>>>> gw26.qurray.iu.teragrid.org.
>>>>>>>>>>
>>>>>>>>>> I've followed the instruction:
>>>>>>>>>> Check out the code from svn: "svn co
>>>>>>>>>> https://svn.apache.org/repos/asf/incubator/airavata/trunk/";.
>>>>>>>>>> Make sure the java version is: 1.6.0_19.
>>>>>>>>>> Make sure the maven version is: "Apache Maven 3.0.4 (r1232337;
>>>>>>>> 2012-01-17
>>>>>>>>>> 03:44:56-0500)".
>>>>>>>>>>
>>>>>>>>>> However, no matter I build with "mvn clean install" or "mvn clean
>>>>>>>> install
>>>>>>>>>> -DskipTests", I get errors:
>>>>>>>>>>
>>>>>>>>>> [INFO]
>>>>>>>>>>
>> ------------------------------------------------------------------------
>>>>>>>>>> [INFO] Reactor Summary:
>>>>>>>>>> [INFO]
>>>>>>>>>> [INFO] Airavata .......................................... SUCCESS
>>>>>>>>>> [7.523s]
>>>>>>>>>> [INFO] Airavata Commons .................................. SUCCESS
>>>>>>>>>> [0.102s]
>>>>>>>>>> [INFO] Airavata GFac Schema Utilities .................... SUCCESS
>>>>>>>>>> [30.255s]
>>>>>>>>>> [INFO] Airavata Common Utilities ......................... SUCCESS
>>>>>>>>>> [6.998s]
>>>>>>>>>> [INFO] Airavata Common Registry API ...................... SUCCESS
>>>>>>>>>> [6.801s]
>>>>>>>>>> [INFO] Airavata Registry API ............................. SUCCESS
>>>>>>>>>> [4:22.340s]
>>>>>>>>>> [INFO] Airavata Workflow Execution Context ............... SUCCESS
>>>>>>>>>> [14.873s]
>>>>>>>>>> [INFO] Airavata-WS-Messenger ............................. SUCCESS
>>>>>>>>>> [0.102s]
>>>>>>>>>> [INFO] Messenger Commons ................................. SUCCESS
>>>>>>>>>> [10.284s]
>>>>>>>>>> [INFO] Messenger Client .................................. SUCCESS
>>>>>>>>>> [10.984s]
>>>>>>>>>> [INFO] Airavata Workflow Tracking ........................ SUCCESS
>>>>>>>>>> [23.850s]
>>>>>>>>>> [INFO] GFac-Core ......................................... SUCCESS
>>>>>>>>>> [19.056s]
>>>>>>>>>> [INFO] GFac-Axis2-Interface .............................. SUCCESS
>>>>>>>>>> [24.018s]
>>>>>>>>>> [INFO] MessageBox ........................................ FAILURE
>>>>>>>>>> [1:14.598s]
>>>>>>>>>> [INFO] Message Broker .................................... SKIPPED
>>>>>>>>>> [INFO] distribution ...................................... SKIPPED
>>>>>>>>>> [INFO] Airavata XBaya .................................... SKIPPED
>>>>>>>>>> [INFO] Simple Math Service ............................... SKIPPED
>>>>>>>>>> [INFO] Complex Math Service .............................. SKIPPED
>>>>>>>>>> [INFO] Levenshtein Distance Service ...................... SKIPPED
>>>>>>>>>> [INFO] distribution ...................................... SKIPPED
>>>>>>>>>> [INFO] Test-Suite ........................................ SKIPPED
>>>>>>>>>> [INFO]
>>>>>>>>>>
>> ------------------------------------------------------------------------
>>>>>>>>>> [INFO] BUILD FAILURE
>>>>>>>>>> [INFO]
>>>>>>>>>>
>> ------------------------------------------------------------------------
>>>>>>>>>> [INFO] Total time: 8:13.569s
>>>>>>>>>> [INFO] Finished at: Thu Feb 02 21:43:55 EST 2012
>>>>>>>>>> [INFO] Final Memory: 44M/151M
>>>>>>>>>> [INFO]
>>>>>>>>>>
>> ------------------------------------------------------------------------
>>>>>>>>>> [ERROR] Failed to execute goal
>>>>>>>>>> org.apache.maven.plugins:maven-surefire-plugin:2.10:test
>> (default-test)
>>>>>>>> on
>>>>>>>>>> project messagebox: There are test failures.
>>>>>>>>>> [ERROR]
>>>>>>>>>> [ERROR] Please refer to
>>>>>>>>>>
>>>>>>>>
>> /home/gridchem/airavata-trunk/modules/ws-messenger/messagebox/target/surefire-reports
>>>>>>>>>> for the individual test results.
>>>>>>>>>>
>>>>>>>>>> Please help.
>>>>>>>>>>
>>>>>>>>>> Thanks
>>>>>>>>>> Ye
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Regards,
>>>>>>>>> Heshan Suriyaarachchi
>>>>>>>>>
>>>>>>>>> http://heshans.blogspot.com/
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Regards,
>>>>>>>> Heshan Suriyaarachchi
>>>>>>>>
>>>>>>>> http://heshans.blogspot.com/
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> System Analyst Programmer
>>>>>>> PTI Lab
>>>>>>> Indiana University
>>>>>>
>>>>>
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>>>
>>
>>
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>
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
