Hello, I installed ant-1.4.1 from jakarta.apache.org and tried to use it to run biojava. i run java1.2.2 on a dec alpha OSF1. java-home, ant-home are defined properly.
>>ant javadocs works but >>ant package does not work. ________________________________________________________________________ >>ant package Buildfile: build.xml init: prepare: [mkdir] Created dir: HOME/JAVA/biojava-live/ant-build prepare-src: [mkdir] Created dir: HOME/JAVA/biojava-live/ant-build/src/main [mkdir] Created dir: HOME/JAVA/biojava-live/ant-build/classes/main [mkdir] Created dir: HOME/JAVA/biojava-live/ant-build/src/tests [mkdir] Created dir: HOME/JAVA/biojava-live/ant-build/classes/tests [mkdir] Created dir: HOME/JAVA/biojava-live/reports/tests [copy] Copying 783 files to HOME/JAVA/biojava-live/ant-build/src/main [copy] Copying 54 files to HOME/JAVA/biojava-live/ant-build/src/tests [copy] Copying 1 file to HOME/JAVA/biojava-live/ant-build/src/main [copy] Copying 7 files to HOME/JAVA/biojava-live/ant-build/classes/main compile: [javac] Modern compiler is not available - using classic compiler [javac] Compiling 717 source files to HOME/JAVA/biojava-live/ant-build/classes/main [javac] HOME/JAVA/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/CharacterTokenization.java:55: T he method org.biojava.bio.seq.io.TokenType getTokenType() declared in class org.biojava.bio.seq.io.CharacterT okenization cannot override the method of the same signature declared in interface org.biojava.bio.seq.io.Sym bolTokenization. They must have the same return type. [javac] public TokenType getTokenType() { [javac] ^ [javac] HOME/JAVA/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/WordTokenization.java:52: The me thod org.biojava.bio.seq.io.TokenType getTokenType() declared in class org.biojava.bio.seq.io.WordTokenizatio n cannot override the method of the same signature declared in interface org.biojava.bio.seq.io.SymbolTokeniz ation. They must have the same return type. [javac] public TokenType getTokenType() { [javac] ^ [javac] HOME/JAVA/biojava-live/ant-build/src/main/org/biojava/bio/seq/FramedFeature.java:52: The method o rg.biojava.bio.seq.Strand getStrand() declared in interface org.biojava.bio.seq.FramedFeature cannot override the method of the same signature declared in interface org.biojava.bio.seq.StrandedFeature. They must have the same return type. [javac] Strand getStrand(); .......... [javac] void writeCurrentHSP( HSPSummary oHSPSummary, BlastLikeAlignment oAlignment ) { [javac] ^ [javac] HOME/JAVA/biojava-live/ant-build/src/main/org/biojava/bio/gui/sequence/PairwiseFilteringRenderer. java:436: No method matching hasListeners() found in class org.biojava.bio.gui.sequence.PairwiseFilteringRend erer. [javac] if (hasListeners()) [javac] ^ [javac] Note: 2 files use or override a deprecated API. Recompile with "-deprecation" for details. [javac] 6 errors, 5 warnings BUILD FAILED HOME/JAVA/biojava-live/build.xml:140: Compile failed, messages should have been provided. Total time: 3 minutes 5 seconds _______________________________________________________________________ >> ant javadocs [javadoc] Constructing Javadoc information... [javadoc] javadoc: warning - Cannot find class org.biojava.bio.seq.Strand [javadoc] javadoc: warning - Cannot find class org.biojava.bio.seq.io.TokenType [javadoc] 1 error [javadoc] 2 warnings [javadoc] javadoc: java.lang.OutOfMemoryError: Please increase memory. [javadoc] For example, on the Sun Classic or HotSpot VMs, add the option -J-Xmx [javadoc] such as -J-Xmx32m. BUILD SUCCESSFUL -- To unsubscribe, e-mail: <mailto:[EMAIL PROTECTED]> For additional commands, e-mail: <mailto:[EMAIL PROTECTED]>