Hi Isabelle, I suspect that Apollo expects the synonym term to be in a particular controlled vocabulary. What cv is the cvterm in, ie,
SELECT cv.name FROM cv JOIN cvterm USING (cv_id) WHERE cvterm.name='synonym'; Hopefully, Ed will be able to shed more light on this. Scott On Thu, Oct 2, 2008 at 3:29 PM, Isabelle Phan <[EMAIL PROTECTED]> wrote: > Hello > > I am running Apollo 1.9.5 on a chado database and having trouble editing > data with the Annotation editor: > > 1) add synonym to gene name seems to work, data is saved in tables > feature_synonym and synonym in but error logs returns: > lookup failed for cvterm_id for cvterm with name ='synonym' > database has no 'synonym' cvterm; > > I checked that an entry exists in table cvterm with name = 'synonym' > (cvterm_id=28874), so I don't quite understand that message. > > 2) delete synonym from gene name fails. The interface shows no error > upon saving, but the records are still there in feature_synonym and > synonym, and the error logs show the same messages as above after the > DELETE statement. > > > > Isabelle > _______________________________________________ > apollo mailing list > [email protected] > http://mail.fruitfly.org/mailman/listinfo/apollo > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. [EMAIL PROTECTED] GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research _______________________________________________ apollo mailing list [email protected] http://mail.fruitfly.org/mailman/listinfo/apollo
