Hi Gray, The Apollo annotation editor is used in the GMOD community to do manual annotation like you are doing. Apollo has great user documentation, but does have a non-trivial learning curve. See http://gmod.org/wiki/Apollo for more on Apollo.
I'm forwarding your query on to the Apollo mailing list. There will be folks on that list who can address how well Apollo addresses your specific situation. Thanks, Dave C. Was this helpful? Let us know at http://gmod.org/wiki/Help_Desk_Feedback Learn more about GMOD at: SMBE: http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27 Arthropod Genomics: http://www.k-state.edu/agc/symp2009/seminar.html AGA Next Gen Seq in Non-Models: http://www.regonline.com/Nextgeneration On Wed, May 27, 2009 at 11:03 AM, Gray Camp <[email protected]> wrote: > Hello. I'm a grad student in genetics at UNC-Chapel Hill. I am working > on a project to understand the transcriptional regulation of a certain > gene. I'd like to annotate the coding and non-coding regions of the > gene and map potential regulatory elements/information directly to the > sequence. Many of the potential regulatory elements/transcription > factor binding sites will be overlapping. I would also like to include > information about the regulatory sequence into the annotation. I > happened across your site while searching for an annotator that fits > my needs. Do you have a recommendation for which software would be > most useful for me? Right now I am working on a single gene. Artemis > is the closest thing I have found so far but it had some features I > didn't like and wanted to try something else. Thanks for you help. > > Gray Camp > _______________________________________________ apollo mailing list [email protected] http://mail.fruitfly.org/mailman/listinfo/apollo
