Hi Ed, I tried that, as well as BLASTN: and BLASTN:na. How do you turn on logging on the command line so I can try to figure out what is happen? Also, can you suggest a way to modify the analysis table row to make it more likely to work?
Thanks, Scott On Wed, Jun 10, 2009 at 5:15 PM, Ed Lee<[email protected]> wrote: > Hey Scott, > > Try using "BLASTN" as the resulttype instead of "BLASTN:BLASTN". > > Cheers, > Ed > > On Tue, 9 Jun 2009, Scott Cain wrote: > >> Hi Ed, >> >> How does the tiers file field "resulttype" map to Chado? >> Specifically, I'm trying to use the conf below to extract blast >> results from chado where the analysis table row for these results look >> like this: >> >> analysis_id | name | program | programversion | sourcename >> -------------+--------+---------+----------------+------------ >> 44 | BLASTN | BLASTN | null | >> >> [Tier] >> tiername : BLASTN >> visible : true >> expanded : true >> >> [Type] >> tiername : BLASTN >> typename : BLASTN:BLASTN >> resulttype : BLASTN:BLASTN >> color : 204,0,51 >> usescore : false >> minscore : 0 >> maxscore : 100 >> glyph : DrawableResultFeatureSet >> column : SCORE >> column : expect >> column : query_frame >> column : GENOMIC_RANGE >> column : MATCH_RANGE >> column : GENOMIC_LENGTH >> column : MATCH_LENGTH >> sortbycolumn : GENOMIC_RANGE >> groupby : HOMOLOGY >> weburl : >> freshdate: 26-NOV-2007 >> >> Thanks, >> Scott >> >> >> -- >> ------------------------------------------------------------------------ >> Scott Cain, Ph. D. scott at scottcain >> dot net >> GMOD Coordinator (http://gmod.org/) 216-392-3087 >> Ontario Institute for Cancer Research >> >> > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research _______________________________________________ apollo mailing list [email protected] http://mail.fruitfly.org/mailman/listinfo/apollo
