Hi everybody!
Here the problem: I'm using (still!) Apollo1.10.0 connected to a Chado
DB, and I'm having problems when trying to get additional information
for a feature via the web. My Apollo is linked to the GBrowse, as shown
in the xxx.tiers file
[Type]
tiername : Gene Integration
typename : Gaze
resulttype : Gaze:XXXX_wss_Gaze
color : 0,0,255
usescore : true
glyph : DrawableResultFeatureSet
column : SCORE
column : GENOMIC_RANGE
column : query_frame
sortbycolumn : GENOMIC_RANGE
weburl :
https://www.genoscope.cns.fr/secure-nda/XXXXX/cgi-bin/gbrowse/XXXX/?name=
1) launch apollo on my Linux (Java version: 1.6.0_04) -> OK
2) search for my gene model -> OK
But when selecting the gene model feature, it doesn't always get the
right link using the "Get info for this feature via web"
when working, it points out on the
https://www.genoscope.cns.fr/secure-nda/XXXXX/cgi-bin/gbrowse/XXXX/?name=GSCHCT00011788001
but sometimes just get
https://www.genoscope.cns.fr/secure-nda/XXXXX/cgi-bin/gbrowse/XXXX/?name=Gaze:164606-163765
so, the name (in the analysis table from Chado) and the start-end of the
genomic region (instead of the gene model ID).
Any ideas why this can happen?
Thanks a lot!!
Betina
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Betina Porcel
Analyse de séquences de génomes eucaryotes
(Coordination Plateforme d'Annotation Experte)
Genoscope - Institut de Génomique - CEA
2, rue Gaston Crémieux CP5706
91057 Evry CEDEX France
Tel: +33 (0)1 60 87 25 20
Fax: +33 (0)1 60 87 25 14
E-mail: [email protected]
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