Hi,
I am new to using the Apollo genome browser, and am having some trouble
trying to overlap BLAT result output with my sequence information.
We have genbank and gff file containing the genomic sequence of a contig
from a genome. I am able to use apollo to view this data along with all
the annotations.
Along with that, we have the result of a BLAT run of mRNA sequences
matched
against this genbank file (in .psl format). We are trying to overlay the
BLAT result over the currently view contig data, but are unable to do
so.
On trying to open the '.psl' file, we get this error logged in the
'stdout.log'
file
-----------
ERROR: Failed to parse blat data
-----------
We converted the .psl to gff format. But on trying to load this gff file
doesn't work either. The popped up dialog box freezes, and there is no
corresponding message logged in the stdout/stderr log files.
Any help in this regard is appreciated!
Thanks!
--Binu
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